prot_H-elongata_contig169546.4313.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig169546.4313.1
Unique Nameprot_H-elongata_contig169546.4313.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length104
Homology
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BLAST of mRNA_H-elongata_contig169546.4313.1 vs. uniprot
Match: D8LEE2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEE2_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 6.370e-15
Identity = 41/68 (60.29%), Postives = 48/68 (70.59%), Query Frame = 0 
Query:   48 ISGCSGG-----------GESRRALRLLREMEVDPRSEARPEPLTYSLVLKACGRDGQWETALELLAE 104
            I+GCS G           GE  RALRLL EM  DPR EA+PE L+Y+LVLKACGR+G+WETAL+LL E
Sbjct:  323 ITGCSCGPXXXXXXXXXXGEVERALRLLEEMAADPRPEAQPEALSYTLVLKACGREGRWETALQLLTE 390
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BLAST of mRNA_H-elongata_contig169546.4313.1 vs. uniprot
Match: A0A0G4F8K7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F8K7_VITBC)

HSP 1 Score: 57.0 bits (136), Expect = 3.130e-7
Identity = 32/96 (33.33%), Postives = 53/96 (55.21%), Query Frame = 0 
Query:    7 VTFTSGISAASRSGRVASAEEILHRMHLEGVLPNTASYNAAISGCSGGGESRRALRLLREME--VDPRSEARPEPLTYSLVLKACGRDGQWETALE 100
            V+F S ++A +++G  A A +    M   GV PN  +Y+  I   +  G   +A ++L++ME   +  S   P  +TYS ++KACGR GQ   A++
Sbjct:  153 VSFCSVMNAHAKTGDFAKANDTFALMVSRGVSPNERAYSILIDAYAQWGHVDKAFQVLQDMESRAEDGSSCMPNAVTYSSLIKACGRGGQVNLAIQ 248
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BLAST of mRNA_H-elongata_contig169546.4313.1 vs. uniprot
Match: A0A812VLS7_SYMPI (Hypothetical protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812VLS7_SYMPI)

HSP 1 Score: 50.4 bits (119), Expect = 6.040e-5
Identity = 22/68 (32.35%), Postives = 42/68 (61.76%), Query Frame = 0 
Query:   37 VLPNTASYNAAISGCSGGGESRRALRLLREMEVDPRSEARPEPLTYSLVLKACGRDGQWETALELLAE 104
            V+PN A++NAA++ CS  G +   +   +   +D  S   P+ LTY++++ AC ++G W+  L+ L++
Sbjct:  321 VIPNAATFNAALTSCSSHGLATALMAWNQLKTLDQPSF--PDVLTYNIMINACSKEGAWQLGLQFLSD 386
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig169546.4313.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LEE2_ECTSI6.370e-1560.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0G4F8K7_VITBC3.130e-733.33Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A812VLS7_SYMPI6.040e-532.35Hypothetical protein n=1 Tax=Symbiodinium pilosum ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 43..68
e-value: 2.8E-4
score: 18.8
coord: 7..41
e-value: 6.2E-5
score: 20.9
coord: 81..103
e-value: 5.1E-4
score: 18.0
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 7..51
e-value: 2.2E-5
score: 24.4
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 81..103
e-value: 0.0017
score: 18.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 78..104
score: 8.692
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 40..70
score: 8.528
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 5..39
score: 8.791
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 5..104
e-value: 6.7E-23
score: 83.7
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 7..102

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig169546contigH-elongata_contig169546:27..338 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig169546.4313.1mRNA_H-elongata_contig169546.4313.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig169546 27..338 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig169546.4313.1 ID=prot_H-elongata_contig169546.4313.1|Name=mRNA_H-elongata_contig169546.4313.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
MLIIIKVTFTSGISAASRSGRVASAEEILHRMHLEGVLPNTASYNAAISG
CSGGGESRRALRLLREMEVDPRSEARPEPLTYSLVLKACGRDGQWETALE
LLAE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf