mRNA_H-elongata_contig168943.4288.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig168943.4288.1
Unique NamemRNA_H-elongata_contig168943.4288.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig168943.4288.1 vs. uniprot
Match: A0A6H5JD01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD01_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.110e-19
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 DKFLPYFDFIGDFNHVQEHSEELLRRAGLWDEFGASGWGPDGKNAFFQR 147
            DKFLPYFDF+GDF HVQEHSEE L+RAGLW EFGASGWG  G+ AFFQR
Sbjct:  950 DKFLPYFDFVGDFKHVQEHSEEFLKRAGLWKEFGASGWGRWGQAAFFQR 998
[Close]
BLAST of mRNA_H-elongata_contig168943.4288.1 vs. uniprot
Match: D8LIV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIV5_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 7.170e-19
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    1 DKFLPYFDFIGDFNHVQEHSEELLRRAGLWDEFGASGWGPDGKNAFFQ 144
            DKFLPYFDF+GDF HVQEHSEE L+RAGLW++FGASGWG  G+ AFFQ
Sbjct:  873 DKFLPYFDFVGDFKHVQEHSEEFLKRAGLWEKFGASGWGRWGQAAFFQ 920
[Close]
BLAST of mRNA_H-elongata_contig168943.4288.1 vs. uniprot
Match: A0A835YWJ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWJ0_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 7.660e-9
Identity = 22/41 (53.66%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 DKFLPYFDFIGDFNHVQEHSEELLRRAGLWDEFGASGWGPD 123
            DKFLPY +FI ++  VQ H  E+L + G+W+++GASGWG D
Sbjct:  769 DKFLPYMNFIAEYTQVQHHVREMLEKVGMWEQYGASGWGRD 809
[Close]
BLAST of mRNA_H-elongata_contig168943.4288.1 vs. uniprot
Match: A0A7S2WKE2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKE2_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 6.860e-5
Identity = 19/41 (46.34%), Postives = 24/41 (58.54%), Query Frame = 1 
Query:   19 FDFIGDFNHVQEHSEELLRRAGLWDEFGASGWGPDGKNAFF 141
            + F G+F  + EH    L +AGLW EFG SGWGP    + F
Sbjct:  102 YSFFGNFERLPEHGRAFLTQAGLWKEFGESGWGPGENVSMF 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig168943.4288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JD01_9PHAE1.110e-1981.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIV5_ECTSI7.170e-1979.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YWJ0_9STRA7.660e-953.66Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2WKE2_9STRA6.860e-546.34Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig168943contigH-elongata_contig168943:1042..1257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue1.3e-15
Seed eggNOG ortholog2880.D8LIV5
EggNOG free text desc.Sulfotransferase family
EggNOG OGs2E1X5@1,2S96K@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929986.8556836-CDS-H-elongata_contig168943:1041..12571622929986.8556836-CDS-H-elongata_contig168943:1041..1257Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168943 1042..1257 -
1691679235.623279-CDS-H-elongata_contig168943:1041..12571691679235.623279-CDS-H-elongata_contig168943:1041..1257Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168943 1042..1257 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig168943.4288.1prot_H-elongata_contig168943.4288.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig168943 1042..1257 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig168943.4288.1

>prot_H-elongata_contig168943.4288.1 ID=prot_H-elongata_contig168943.4288.1|Name=mRNA_H-elongata_contig168943.4288.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
DKFLPYFDFIGDFNHVQEHSEELLRRAGLWDEFGASGWGPDGKNAFFQRW
GVCVGGGRGCRRGSCKTMKGFV
back to top

mRNA from alignment at H-elongata_contig168943:1042..1257-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig168943.4288.1 ID=mRNA_H-elongata_contig168943.4288.1|Name=mRNA_H-elongata_contig168943.4288.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig168943:1042..1257- (Himanthalia elongata Himel1 dioecious)
GACAAGTTCCTTCCGTACTTTGACTTCATTGGGGACTTCAATCACGTGCA
GGAGCACTCCGAGGAGCTCCTGAGGCGCGCTGGGTTGTGGGACGAGTTCG
GTGCCTCCGGCTGGGGACCCGACGGGAAAAACGCCTTCTTCCAAAGGTGG
GGTGTGTGTGTGGGGGGGGGGAGGGGGTGTCGCCGGGGAAGCTGCAAGAC
GATGAAGGGATTCGTC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig168943:1042..1257-

>mRNA_H-elongata_contig168943.4288.1 ID=mRNA_H-elongata_contig168943.4288.1|Name=mRNA_H-elongata_contig168943.4288.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig168943:1042..1257- (Himanthalia elongata Himel1 dioecious)
GACAAGTTCCTTCCGTACTTTGACTTCATTGGGGACTTCAATCACGTGCA
GGAGCACTCCGAGGAGCTCCTGAGGCGCGCTGGGTTGTGGGACGAGTTCG
GTGCCTCCGGCTGGGGACCCGACGGGAAAAACGCCTTCTTCCAAAGGTGG
GGTGTGTGTGTGGGGGGGGGGAGGGGGTGTCGCCGGGGAAGCTGCAAGAC
GATGAAGGGATTCGTCGACAAGTTCCTTCCGTACTTTGACTTCATTGGGG
ACTTCAATCACGTGCAGGAGCACTCCGAGGAGCTCCTGAGGCGCGCTGGG
TTGTGGGACGAGTTCGGTGCCTCCGGCTGGGGACCCGACGGGAAAAACGC
CTTCTTCCAAAGGTGGGGTGTGTGTGTGGGGGGGGGGAGGGGGTGTCGCC
GGGGAAGCTGCAAGACGATGAAGGGATTCGTC
back to top