mRNA_H-elongata_contig168542.4270.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig168542.4270.1
Unique NamemRNA_H-elongata_contig168542.4270.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig168542.4270.1 vs. uniprot
Match: D8LTR2_ECTSI (Vesicle transport protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTR2_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 1.800e-27
Identity = 49/69 (71.01%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:    7 KGPTKHLRSMVGRDRLPFSLAYVGSMAGTLYACLVLRSYLMVVAFSAVQLVALAWYFVSFVPGGSKGMK 213
            KGP  HL+SM+ RDRLPF++AYVGSM  TLYACL+L+SY+MVV  S +QL+ALAWYF+SFVPGGS+GM+
Sbjct:  141 KGPVAHLKSMLARDRLPFTVAYVGSMGATLYACLILQSYMMVVTCSVIQLLALAWYFLSFVPGGSQGMR 209
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BLAST of mRNA_H-elongata_contig168542.4270.1 vs. uniprot
Match: A0A7S0EXI8_9EUKA (Vesicle transport protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EXI8_9EUKA)

HSP 1 Score: 83.6 bits (205), Expect = 3.450e-18
Identity = 39/69 (56.52%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:    7 KGPTKHLRSMVGRDRLPFSLAYVGSMAGTLYACLVLRSYLMVVAFSAVQLVALAWYFVSFVPGGSKGMK 213
            +GPT+ L+ M+   RLPF+  Y+GSM  TLYA LV +SYL+V+ FSAVQ+ ALAWY +S+VPGG+  +K
Sbjct:  122 RGPTEQLKHMLSIQRLPFTATYIGSMVLTLYAALVAQSYLLVILFSAVQVSALAWYVLSYVPGGAPALK 190
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BLAST of mRNA_H-elongata_contig168542.4270.1 vs. uniprot
Match: UPI00201B20E9 (protein transport protein SFT2 isoform X2 n=1 Tax=Ricinus communis TaxID=3988 RepID=UPI00201B20E9)

HSP 1 Score: 82.0 bits (201), Expect = 5.790e-18
Identity = 36/69 (52.17%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    7 KGPTKHLRSMVGRDRLPFSLAYVGSMAGTLYACLVLRSYLMVVAFSAVQLVALAWYFVSFVPGGSKGMK 213
            KGP      M  ++RLPF+L ++GSMAGT+Y  +VL SY++ V FS +Q++ALA+Y +S+ PGGS GMK
Sbjct:   89 KGPKNQFAHMTSKERLPFTLGFIGSMAGTIYVSMVLHSYILSVLFSVIQVLALAYYVISYFPGGSAGMK 157
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BLAST of mRNA_H-elongata_contig168542.4270.1 vs. uniprot
Match: A0A5D3AF26_GOSMU (Vesicle transport protein n=1 Tax=Gossypium mustelinum TaxID=34275 RepID=A0A5D3AF26_GOSMU)

HSP 1 Score: 80.9 bits (198), Expect = 1.360e-17
Identity = 37/69 (53.62%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    7 KGPTKHLRSMVGRDRLPFSLAYVGSMAGTLYACLVLRSYLMVVAFSAVQLVALAWYFVSFVPGGSKGMK 213
            +GP   L  M  ++RLPF+L ++GSMAGT+Y  +VL SY++ V FS VQ++ALA+Y VS+ PGGS G+K
Sbjct:   81 RGPKNQLAHMSSKERLPFALGFIGSMAGTMYVSMVLHSYILSVLFSVVQVLALAYYAVSYFPGGSAGLK 149
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BLAST of mRNA_H-elongata_contig168542.4270.1 vs. uniprot
Match: B9T1Q6_RICCO (Vesicle transport protein n=6 Tax=Euphorbiaceae TaxID=3977 RepID=B9T1Q6_RICCO)

HSP 1 Score: 81.6 bits (200), Expect = 2.600e-17
Identity = 36/69 (52.17%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    7 KGPTKHLRSMVGRDRLPFSLAYVGSMAGTLYACLVLRSYLMVVAFSAVQLVALAWYFVSFVPGGSKGMK 213
            KGP      M  ++RLPF+L ++GSMAGT+Y  +VL SY++ V FS +Q++ALA+Y +S+ PGGS GMK
Sbjct:  147 KGPKNQFAHMTSKERLPFTLGFIGSMAGTIYVSMVLHSYILSVLFSVIQVLALAYYAISYFPGGSAGMK 215
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BLAST of mRNA_H-elongata_contig168542.4270.1 vs. uniprot
Match: U5D0N9_AMBTC (Vesicle transport protein n=5 Tax=Magnoliopsida TaxID=3398 RepID=U5D0N9_AMBTC)

HSP 1 Score: 81.6 bits (200), Expect = 2.740e-17
Identity = 37/69 (53.62%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    7 KGPTKHLRSMVGRDRLPFSLAYVGSMAGTLYACLVLRSYLMVVAFSAVQLVALAWYFVSFVPGGSKGMK 213
            KGP   L  M  R+RLPF+L ++GSMAGT+Y  +VL SY++ V FSA+Q++AL +Y +S+ PGGS G+K
Sbjct:  150 KGPRNQLAHMSSRERLPFTLGFIGSMAGTIYVSMVLHSYILSVLFSALQVLALGYYAISYFPGGSAGLK 218
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BLAST of mRNA_H-elongata_contig168542.4270.1 vs. uniprot
Match: UPI0010A41CD2 (LOW QUALITY PROTEIN: protein transport protein SFT2-like n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A41CD2)

HSP 1 Score: 79.7 bits (195), Expect = 3.680e-17
Identity = 35/69 (50.72%), Postives = 50/69 (72.46%), Query Frame = 1 
Query:    7 KGPTKHLRSMVGRDRLPFSLAYVGSMAGTLYACLVLRSYLMVVAFSAVQLVALAWYFVSFVPGGSKGMK 213
            KGP   L  M  ++RLPF+L ++GSM GT+Y  +VL SY++ V FS +Q++AL +Y +S+ PGGS GMK
Sbjct:   79 KGPXNQLAHMASKERLPFTLGFIGSMIGTIYVSMVLHSYILSVLFSVIQVLALGYYAISYFPGGSAGMK 147
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BLAST of mRNA_H-elongata_contig168542.4270.1 vs. uniprot
Match: V4WGV7_CITCL (Vesicle transport protein n=3 Tax=Citrus TaxID=2706 RepID=V4WGV7_CITCL)

HSP 1 Score: 81.3 bits (199), Expect = 3.710e-17
Identity = 36/69 (52.17%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    7 KGPTKHLRSMVGRDRLPFSLAYVGSMAGTLYACLVLRSYLMVVAFSAVQLVALAWYFVSFVPGGSKGMK 213
            +GP   L  M  ++RLPF+L ++GSMAGT+Y  +VL SY++ V FS +Q++ALA+Y +S+ PGGS GMK
Sbjct:  148 RGPKNQLAHMSSKERLPFTLGFIGSMAGTIYVSMVLHSYILSVLFSVIQVLALAYYAISYFPGGSAGMK 216
[Close]
BLAST of mRNA_H-elongata_contig168542.4270.1 vs. uniprot
Match: A0A5P1ETG4_ASPOF (Vesicle transport protein n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1ETG4_ASPOF)

HSP 1 Score: 81.3 bits (199), Expect = 4.460e-17
Identity = 35/69 (50.72%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    7 KGPTKHLRSMVGRDRLPFSLAYVGSMAGTLYACLVLRSYLMVVAFSAVQLVALAWYFVSFVPGGSKGMK 213
            +GP   L  M  ++RLPF+L ++GSM GT+Y  +VL SY++ VAFS +Q++AL++Y +S+ PGGS GMK
Sbjct:  139 RGPKNQLAHMASKERLPFTLGFIGSMVGTIYVSIVLHSYILSVAFSVIQVMALSYYAISYFPGGSTGMK 207
[Close]
BLAST of mRNA_H-elongata_contig168542.4270.1 vs. uniprot
Match: A0A833VQP7_9POAL (Vesicle transport protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VQP7_9POAL)

HSP 1 Score: 80.9 bits (198), Expect = 4.780e-17
Identity = 37/69 (53.62%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    7 KGPTKHLRSMVGRDRLPFSLAYVGSMAGTLYACLVLRSYLMVVAFSAVQLVALAWYFVSFVPGGSKGMK 213
            KGP   L  M  ++RLPF+L +VG MAGT+Y  +VL SYL+ V FSA+Q++AL +Y +S+ PGGS G+K
Sbjct:  143 KGPANQLAHMTSKERLPFTLGFVGCMAGTIYVSMVLHSYLLSVLFSALQVLALGYYTISYFPGGSTGLK 211
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig168542.4270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTR2_ECTSI1.800e-2771.01Vesicle transport protein n=2 Tax=Ectocarpus TaxID... [more]
A0A7S0EXI8_9EUKA3.450e-1856.52Vesicle transport protein n=1 Tax=Phaeocystis anta... [more]
UPI00201B20E95.790e-1852.17protein transport protein SFT2 isoform X2 n=1 Tax=... [more]
A0A5D3AF26_GOSMU1.360e-1753.62Vesicle transport protein n=1 Tax=Gossypium mustel... [more]
B9T1Q6_RICCO2.600e-1752.17Vesicle transport protein n=6 Tax=Euphorbiaceae Ta... [more]
U5D0N9_AMBTC2.740e-1753.62Vesicle transport protein n=5 Tax=Magnoliopsida Ta... [more]
UPI0010A41CD23.680e-1750.72LOW QUALITY PROTEIN: protein transport protein SFT... [more]
V4WGV7_CITCL3.710e-1752.17Vesicle transport protein n=3 Tax=Citrus TaxID=270... [more]
A0A5P1ETG4_ASPOF4.460e-1750.72Vesicle transport protein n=2 Tax=Asparagus offici... [more]
A0A833VQP7_9POAL4.780e-1753.62Vesicle transport protein n=1 Tax=Carex littledale... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig168542contigH-elongata_contig168542:1079..1294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue6.1e-21
Seed eggNOG ortholog2880.D8LTR2
Preferred nameSFT2
KEGG rclassRC00438,RC00439,RC00603,RC00604
KEGG koko:K01623
KEGG ReactionR01068,R01070,R01829,R02568
KEGG Pathwayko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00001,M00003,M00165,M00167
GOsGO:0000138,GO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016192,GO:0016197,GO:0016482,GO:0031090,GO:0031224,GO:0031984,GO:0031985,GO:0033036,GO:0034613,GO:0042147,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0098588,GO:0098791
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsCOG5102@1,KOG2887@2759
EC4.1.2.13
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko04131,ko04147
Hectar predicted targeting categorysignal anchor
Exons1
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929984.7742712-CDS-H-elongata_contig168542:1078..12941622929984.7742712-CDS-H-elongata_contig168542:1078..1294Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168542 1079..1294 +
1691679235.0090795-CDS-H-elongata_contig168542:1078..12941691679235.0090795-CDS-H-elongata_contig168542:1078..1294Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168542 1079..1294 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig168542.4270.1prot_H-elongata_contig168542.4270.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig168542 1079..1294 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig168542.4270.1

>prot_H-elongata_contig168542.4270.1 ID=prot_H-elongata_contig168542.4270.1|Name=mRNA_H-elongata_contig168542.4270.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
LSKGPTKHLRSMVGRDRLPFSLAYVGSMAGTLYACLVLRSYLMVVAFSAV
QLVALAWYFVSFVPGGSKGMK*
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mRNA from alignment at H-elongata_contig168542:1079..1294+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig168542.4270.1 ID=mRNA_H-elongata_contig168542.4270.1|Name=mRNA_H-elongata_contig168542.4270.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig168542:1079..1294+ (Himanthalia elongata Himel1 dioecious)
CTCTCAAAGGGCCCTACGAAACACCTCCGCTCGATGGTGGGACGAGATCG
TCTTCCCTTTTCGCTGGCGTACGTGGGATCGATGGCGGGAACCCTTTACG
CGTGCCTGGTGCTGAGGTCCTACTTGATGGTGGTGGCATTCTCGGCGGTG
CAGCTGGTCGCGCTCGCATGGTATTTCGTTAGCTTCGTGCCCGGCGGGAG
CAAGGGGATGAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig168542:1079..1294+

>mRNA_H-elongata_contig168542.4270.1 ID=mRNA_H-elongata_contig168542.4270.1|Name=mRNA_H-elongata_contig168542.4270.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig168542:1079..1294+ (Himanthalia elongata Himel1 dioecious)
CTCTCAAAGGGCCCTACGAAACACCTCCGCTCGATGGTGGGACGAGATCG
TCTTCCCTTTTCGCTGGCGTACGTGGGATCGATGGCGGGAACCCTTTACG
CGTGCCTGGTGCTGAGGTCCTACTTGATGGTGGTGGCATTCTCGGCGGTG
CAGCTGGTCGCGCTCGCATGGTATTTCGTTAGCTTCGTGCCCGGCGGGAG
CAAGGGGATGAAGTGACTCTCAAAGGGCCCTACGAAACACCTCCGCTCGA
TGGTGGGACGAGATCGTCTTCCCTTTTCGCTGGCGTACGTGGGATCGATG
GCGGGAACCCTTTACGCGTGCCTGGTGCTGAGGTCCTACTTGATGGTGGT
GGCATTCTCGGCGGTGCAGCTGGTCGCGCTCGCATGGTATTTCGTTAGCT
TCGTGCCCGGCGGGAGCAAGGGGATGAAGTGA
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