prot_H-elongata_contig168542.4270.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig168542.4270.1
Unique Nameprot_H-elongata_contig168542.4270.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length72
Homology
BLAST of mRNA_H-elongata_contig168542.4270.1 vs. uniprot
Match: D8LTR2_ECTSI (Vesicle transport protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTR2_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 1.800e-27
Identity = 49/69 (71.01%), Postives = 61/69 (88.41%), Query Frame = 0
Query:    3 KGPTKHLRSMVGRDRLPFSLAYVGSMAGTLYACLVLRSYLMVVAFSAVQLVALAWYFVSFVPGGSKGMK 71
            KGP  HL+SM+ RDRLPF++AYVGSM  TLYACL+L+SY+MVV  S +QL+ALAWYF+SFVPGGS+GM+
Sbjct:  141 KGPVAHLKSMLARDRLPFTVAYVGSMGATLYACLILQSYMMVVTCSVIQLLALAWYFLSFVPGGSQGMR 209          
BLAST of mRNA_H-elongata_contig168542.4270.1 vs. uniprot
Match: A0A7S0EXI8_9EUKA (Vesicle transport protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EXI8_9EUKA)

HSP 1 Score: 83.6 bits (205), Expect = 3.450e-18
Identity = 39/69 (56.52%), Postives = 53/69 (76.81%), Query Frame = 0
Query:    3 KGPTKHLRSMVGRDRLPFSLAYVGSMAGTLYACLVLRSYLMVVAFSAVQLVALAWYFVSFVPGGSKGMK 71
            +GPT+ L+ M+   RLPF+  Y+GSM  TLYA LV +SYL+V+ FSAVQ+ ALAWY +S+VPGG+  +K
Sbjct:  122 RGPTEQLKHMLSIQRLPFTATYIGSMVLTLYAALVAQSYLLVILFSAVQVSALAWYVLSYVPGGAPALK 190          
BLAST of mRNA_H-elongata_contig168542.4270.1 vs. uniprot
Match: UPI00201B20E9 (protein transport protein SFT2 isoform X2 n=1 Tax=Ricinus communis TaxID=3988 RepID=UPI00201B20E9)

HSP 1 Score: 82.0 bits (201), Expect = 5.790e-18
Identity = 36/69 (52.17%), Postives = 51/69 (73.91%), Query Frame = 0
Query:    3 KGPTKHLRSMVGRDRLPFSLAYVGSMAGTLYACLVLRSYLMVVAFSAVQLVALAWYFVSFVPGGSKGMK 71
            KGP      M  ++RLPF+L ++GSMAGT+Y  +VL SY++ V FS +Q++ALA+Y +S+ PGGS GMK
Sbjct:   89 KGPKNQFAHMTSKERLPFTLGFIGSMAGTIYVSMVLHSYILSVLFSVIQVLALAYYVISYFPGGSAGMK 157          
BLAST of mRNA_H-elongata_contig168542.4270.1 vs. uniprot
Match: A0A5D3AF26_GOSMU (Vesicle transport protein n=1 Tax=Gossypium mustelinum TaxID=34275 RepID=A0A5D3AF26_GOSMU)

HSP 1 Score: 80.9 bits (198), Expect = 1.360e-17
Identity = 37/69 (53.62%), Postives = 52/69 (75.36%), Query Frame = 0
Query:    3 KGPTKHLRSMVGRDRLPFSLAYVGSMAGTLYACLVLRSYLMVVAFSAVQLVALAWYFVSFVPGGSKGMK 71
            +GP   L  M  ++RLPF+L ++GSMAGT+Y  +VL SY++ V FS VQ++ALA+Y VS+ PGGS G+K
Sbjct:   81 RGPKNQLAHMSSKERLPFALGFIGSMAGTMYVSMVLHSYILSVLFSVVQVLALAYYAVSYFPGGSAGLK 149          
BLAST of mRNA_H-elongata_contig168542.4270.1 vs. uniprot
Match: B9T1Q6_RICCO (Vesicle transport protein n=6 Tax=Euphorbiaceae TaxID=3977 RepID=B9T1Q6_RICCO)

HSP 1 Score: 81.6 bits (200), Expect = 2.600e-17
Identity = 36/69 (52.17%), Postives = 51/69 (73.91%), Query Frame = 0
Query:    3 KGPTKHLRSMVGRDRLPFSLAYVGSMAGTLYACLVLRSYLMVVAFSAVQLVALAWYFVSFVPGGSKGMK 71
            KGP      M  ++RLPF+L ++GSMAGT+Y  +VL SY++ V FS +Q++ALA+Y +S+ PGGS GMK
Sbjct:  147 KGPKNQFAHMTSKERLPFTLGFIGSMAGTIYVSMVLHSYILSVLFSVIQVLALAYYAISYFPGGSAGMK 215          
BLAST of mRNA_H-elongata_contig168542.4270.1 vs. uniprot
Match: U5D0N9_AMBTC (Vesicle transport protein n=5 Tax=Magnoliopsida TaxID=3398 RepID=U5D0N9_AMBTC)

HSP 1 Score: 81.6 bits (200), Expect = 2.740e-17
Identity = 37/69 (53.62%), Postives = 52/69 (75.36%), Query Frame = 0
Query:    3 KGPTKHLRSMVGRDRLPFSLAYVGSMAGTLYACLVLRSYLMVVAFSAVQLVALAWYFVSFVPGGSKGMK 71
            KGP   L  M  R+RLPF+L ++GSMAGT+Y  +VL SY++ V FSA+Q++AL +Y +S+ PGGS G+K
Sbjct:  150 KGPRNQLAHMSSRERLPFTLGFIGSMAGTIYVSMVLHSYILSVLFSALQVLALGYYAISYFPGGSAGLK 218          
BLAST of mRNA_H-elongata_contig168542.4270.1 vs. uniprot
Match: UPI0010A41CD2 (LOW QUALITY PROTEIN: protein transport protein SFT2-like n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A41CD2)

HSP 1 Score: 79.7 bits (195), Expect = 3.680e-17
Identity = 35/69 (50.72%), Postives = 50/69 (72.46%), Query Frame = 0
Query:    3 KGPTKHLRSMVGRDRLPFSLAYVGSMAGTLYACLVLRSYLMVVAFSAVQLVALAWYFVSFVPGGSKGMK 71
            KGP   L  M  ++RLPF+L ++GSM GT+Y  +VL SY++ V FS +Q++AL +Y +S+ PGGS GMK
Sbjct:   79 KGPXNQLAHMASKERLPFTLGFIGSMIGTIYVSMVLHSYILSVLFSVIQVLALGYYAISYFPGGSAGMK 147          
BLAST of mRNA_H-elongata_contig168542.4270.1 vs. uniprot
Match: V4WGV7_CITCL (Vesicle transport protein n=3 Tax=Citrus TaxID=2706 RepID=V4WGV7_CITCL)

HSP 1 Score: 81.3 bits (199), Expect = 3.710e-17
Identity = 36/69 (52.17%), Postives = 52/69 (75.36%), Query Frame = 0
Query:    3 KGPTKHLRSMVGRDRLPFSLAYVGSMAGTLYACLVLRSYLMVVAFSAVQLVALAWYFVSFVPGGSKGMK 71
            +GP   L  M  ++RLPF+L ++GSMAGT+Y  +VL SY++ V FS +Q++ALA+Y +S+ PGGS GMK
Sbjct:  148 RGPKNQLAHMSSKERLPFTLGFIGSMAGTIYVSMVLHSYILSVLFSVIQVLALAYYAISYFPGGSAGMK 216          
BLAST of mRNA_H-elongata_contig168542.4270.1 vs. uniprot
Match: A0A5P1ETG4_ASPOF (Vesicle transport protein n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1ETG4_ASPOF)

HSP 1 Score: 81.3 bits (199), Expect = 4.460e-17
Identity = 35/69 (50.72%), Postives = 52/69 (75.36%), Query Frame = 0
Query:    3 KGPTKHLRSMVGRDRLPFSLAYVGSMAGTLYACLVLRSYLMVVAFSAVQLVALAWYFVSFVPGGSKGMK 71
            +GP   L  M  ++RLPF+L ++GSM GT+Y  +VL SY++ VAFS +Q++AL++Y +S+ PGGS GMK
Sbjct:  139 RGPKNQLAHMASKERLPFTLGFIGSMVGTIYVSIVLHSYILSVAFSVIQVMALSYYAISYFPGGSTGMK 207          
BLAST of mRNA_H-elongata_contig168542.4270.1 vs. uniprot
Match: A0A833VQP7_9POAL (Vesicle transport protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VQP7_9POAL)

HSP 1 Score: 80.9 bits (198), Expect = 4.780e-17
Identity = 37/69 (53.62%), Postives = 51/69 (73.91%), Query Frame = 0
Query:    3 KGPTKHLRSMVGRDRLPFSLAYVGSMAGTLYACLVLRSYLMVVAFSAVQLVALAWYFVSFVPGGSKGMK 71
            KGP   L  M  ++RLPF+L +VG MAGT+Y  +VL SYL+ V FSA+Q++AL +Y +S+ PGGS G+K
Sbjct:  143 KGPANQLAHMTSKERLPFTLGFVGCMAGTIYVSMVLHSYLLSVLFSALQVLALGYYTISYFPGGSTGLK 211          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig168542.4270.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTR2_ECTSI1.800e-2771.01Vesicle transport protein n=2 Tax=Ectocarpus TaxID... [more]
A0A7S0EXI8_9EUKA3.450e-1856.52Vesicle transport protein n=1 Tax=Phaeocystis anta... [more]
UPI00201B20E95.790e-1852.17protein transport protein SFT2 isoform X2 n=1 Tax=... [more]
A0A5D3AF26_GOSMU1.360e-1753.62Vesicle transport protein n=1 Tax=Gossypium mustel... [more]
B9T1Q6_RICCO2.600e-1752.17Vesicle transport protein n=6 Tax=Euphorbiaceae Ta... [more]
U5D0N9_AMBTC2.740e-1753.62Vesicle transport protein n=5 Tax=Magnoliopsida Ta... [more]
UPI0010A41CD23.680e-1750.72LOW QUALITY PROTEIN: protein transport protein SFT... [more]
V4WGV7_CITCL3.710e-1752.17Vesicle transport protein n=3 Tax=Citrus TaxID=270... [more]
A0A5P1ETG4_ASPOF4.460e-1750.72Vesicle transport protein n=2 Tax=Asparagus offici... [more]
A0A833VQP7_9POAL4.780e-1753.62Vesicle transport protein n=1 Tax=Carex littledale... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007305Vesicle transport protein, Got1/SFT2-likePFAMPF04178Got1coord: 3..71
e-value: 5.0E-21
score: 75.2
NoneNo IPR availablePANTHERPTHR23137:SF31coord: 3..71
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 40..44
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 45..63
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 21..39
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..20
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 64..71
NoneNo IPR availableTMHMMTMhelixcoord: 44..66
NoneNo IPR availableTMHMMTMhelixcoord: 20..37
IPR011691Vesicle transport protein SFT2PANTHERPTHR23137UNCHARACTERIZEDcoord: 3..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig168542contigH-elongata_contig168542:1079..1294 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig168542.4270.1mRNA_H-elongata_contig168542.4270.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig168542 1079..1294 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig168542.4270.1 ID=prot_H-elongata_contig168542.4270.1|Name=mRNA_H-elongata_contig168542.4270.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
LSKGPTKHLRSMVGRDRLPFSLAYVGSMAGTLYACLVLRSYLMVVAFSAV
QLVALAWYFVSFVPGGSKGMK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007305Vesicle_transpt_Got1/SFT2
IPR011691Vesicle_transpt_SFT2