mRNA_H-elongata_contig16799.4242.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16799.4242.1
Unique NamemRNA_H-elongata_contig16799.4242.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16799.4242.1 vs. uniprot
Match: D8LTH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTH3_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 2.610e-41
Identity = 108/254 (42.52%), Postives = 145/254 (57.09%), Query Frame = 3 
Query:  528 VMFNTAWVTTSTAPIAAAGVLGQPLGRAMVATASSHALFAVSKFTLAYGAMNAGSDVTRVPVASTSGRSKLRAPSPKPWTVRSRTLLPLRRARPPGPGLLPT--GEAAGAETDSRMTIQIRRSAKTVPRIWLMVVTALGGPGVGTVAALATHRLGLITIPAVWSSVSRGSALGTLISASLCHGGVGTCLAARWAVFQGIFGVFIAFLLSLEVLLAVSIFN---TVAGARRR---SLENDAGEGTARGGSDTPKI 1265
            +++ TAW+TTS  P+AAAGV+GQPL RA+VAT ++HA FA  KF+LA  AM+    V   P      R     P+P P T R+       R +   P L P   G  A         IQ+RRSA++VP++WLM +TA GGP +G V +    + GL+ +PA  SS+SRGS +  L++ +LC+GG GT + ARWAVFQGI G   A LLS   L+ V + N    VA +RR    SL    G   A+GG   P +
Sbjct:    2 ILYGTAWMTTSLGPVAAAGVIGQPLSRALVATCAAHASFAAIKFSLAILAMSNFPPVYAPPPR----RHPNNKPTP-PTTPRNXXXXKAPRRKLEFPSLSPRRRGPPAPVSAVPGTRIQVRRSARSVPKLWLMALTAAGGPAMGAVGSAVAWKAGLVAMPAALSSLSRGSVISALLAGTLCYGGAGTEVVARWAVFQGIMGAPFAALLSPSALMLVYLCNYYWRVAKSRRSGPGSLPPGVG-ANAKGGGGAPSV 249
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16799.4242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTH3_ECTSI2.610e-4142.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16799contigH-elongata_contig16799:2840..4492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_005620.1
Exons1
Model size1653
Cds size1143
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16799.4242.1prot_H-elongata_contig16799.4242.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16799 3016..4158 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929981.9015114-UTR-H-elongata_contig16799:2839..30151622929981.9015114-UTR-H-elongata_contig16799:2839..3015Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16799 2840..3015 +
1691679233.8436513-UTR-H-elongata_contig16799:2839..30151691679233.8436513-UTR-H-elongata_contig16799:2839..3015Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16799 2840..3015 +
1622929981.9431932-UTR-H-elongata_contig16799:4158..44921622929981.9431932-UTR-H-elongata_contig16799:4158..4492Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16799 4159..4492 +
1691679233.8597276-UTR-H-elongata_contig16799:4158..44921691679233.8597276-UTR-H-elongata_contig16799:4158..4492Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16799 4159..4492 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929981.9195638-CDS-H-elongata_contig16799:3015..41581622929981.9195638-CDS-H-elongata_contig16799:3015..4158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16799 3016..4158 +
1691679233.8508334-CDS-H-elongata_contig16799:3015..41581691679233.8508334-CDS-H-elongata_contig16799:3015..4158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16799 3016..4158 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16799.4242.1

>prot_H-elongata_contig16799.4242.1 ID=prot_H-elongata_contig16799.4242.1|Name=mRNA_H-elongata_contig16799.4242.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=381bp
MPTSSRRGTPSALGATRNMFRPWRLSALISWRPAVGLRHSVIVAGLLKCL
ILCVWFFATAAAGATMVSRGAQTGGGLSGSVGLNVNVFDKAFYSFAETLE
ILLSDEKVTPFPLKKYFVMFNTAWVTTSTAPIAAAGVLGQPLGRAMVATA
SSHALFAVSKFTLAYGAMNAGSDVTRVPVASTSGRSKLRAPSPKPWTVRS
RTLLPLRRARPPGPGLLPTGEAAGAETDSRMTIQIRRSAKTVPRIWLMVV
TALGGPGVGTVAALATHRLGLITIPAVWSSVSRGSALGTLISASLCHGGV
GTCLAARWAVFQGIFGVFIAFLLSLEVLLAVSIFNTVAGARRRSLENDAG
EGTARGGSDTPKIRDGGEEREKDKNNENKS*
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mRNA from alignment at H-elongata_contig16799:2840..4492+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16799.4242.1 ID=mRNA_H-elongata_contig16799.4242.1|Name=mRNA_H-elongata_contig16799.4242.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1653bp|location=Sequence derived from alignment at H-elongata_contig16799:2840..4492+ (Himanthalia elongata Himel1 dioecious)
AAAAAAACATAGATTTTCTTTTTAAAGAAACTGCGTCACGCCGGAAATTC
AAAATTGCCTTTCCAGTGTGTGGGTTATGAATTTCAAGTTCCACGGCTAA
AGTGCGAACATTGGACACAAAAAGTGTCCACAGCTTGCGGCAAACTTGCC
GTTGCCCTACCCCTTGCCCACCGGTGATGCCGACGTCATCCAGGCGTGGA
ACACCCTCCGCCTTGGGAGCAACGCGAAACATGTTTCGCCCTTGGCGACT
CTCTGCGCTCATCTCGTGGCGGCCAGCGGTTGGCCTCAGGCATTCAGTGA
TCGTGGCGGGATTGTTGAAGTGTTTGATACTTTGTGTGTGGTTTTTTGCA
ACCGCGGCTGCAGGGGCGACAATGGTGAGCCGGGGAGCACAAACAGGAGG
AGGACTGAGTGGTTCTGTCGGCTTGAACGTAAACGTGTTTGATAAGGCAT
TCTATAGTTTTGCCGAGACCCTGGAAATCCTGCTAAGCGACGAAAAGGTC
ACCCCTTTTCCTCTCAAGAAGTACTTCGTCATGTTCAACACCGCCTGGGT
GACCACGAGCACGGCGCCGATCGCGGCGGCGGGTGTGCTCGGTCAACCCC
TAGGGCGAGCCATGGTCGCTACGGCCTCGTCTCATGCCTTGTTCGCCGTG
TCCAAGTTTACTCTGGCCTACGGAGCAATGAACGCGGGCAGCGATGTCAC
TCGGGTACCGGTGGCTTCCACCTCCGGACGATCGAAGCTGCGAGCTCCTT
CTCCAAAGCCGTGGACCGTTCGGTCTCGAACGCTGCTCCCTCTCAGGCGC
GCACGACCCCCCGGTCCCGGGTTGCTGCCCACGGGGGAAGCGGCCGGGGC
AGAAACAGACAGTCGCATGACGATACAGATTCGCCGGTCTGCGAAGACCG
TCCCACGCATATGGTTGATGGTAGTCACGGCGCTTGGAGGACCGGGGGTG
GGGACAGTAGCGGCTTTAGCGACGCATCGTCTTGGGCTGATTACAATTCC
GGCGGTGTGGTCGTCGGTTTCAAGAGGTTCTGCTCTGGGGACGTTGATAT
CTGCCTCGCTCTGCCACGGAGGCGTGGGGACATGTTTGGCAGCGCGGTGG
GCGGTCTTCCAGGGAATATTTGGTGTTTTTATCGCGTTTTTACTCAGCCT
CGAGGTTCTCTTAGCGGTCAGCATATTCAACACCGTGGCGGGAGCTAGAC
GACGTAGCTTGGAGAACGACGCCGGAGAAGGGACGGCGCGCGGCGGGTCG
GACACGCCCAAGATACGAGATGGGGGAGAAGAACGAGAAAAGGACAAAAA
TAACGAAAATAAGTCATAGCGAATCGCGAATTTCATGAGGTGCACTAAAA
CGCGAATTGAGTTATAGTCATGATATTTCGATATTTCCTCGCTAGCAAAC
GCCAAACATTAGTATCGAAGGATAGCTGTGCATCGTGAGATGTTTGCCCT
GTGCGCCGCAGATACATGTGATGACATGCATACATAATCGAACTCGCCTT
GACAAGCATGATCATACAACGCAATGCTTCATATTTTATCTGTCTAAGAG
AATAAGCGATTCTGACTAAACGTACCCAAATATGATAGGGAACGCATAAT
ATCCATCCACATCACACATCAATGGTGAAAATCGCACATGCAACGCTTTA
TTT
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Coding sequence (CDS) from alignment at H-elongata_contig16799:2840..4492+

>mRNA_H-elongata_contig16799.4242.1 ID=mRNA_H-elongata_contig16799.4242.1|Name=mRNA_H-elongata_contig16799.4242.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2286bp|location=Sequence derived from alignment at H-elongata_contig16799:2840..4492+ (Himanthalia elongata Himel1 dioecious)
ATGCCGACGTCATCCAGGCGTGGAACACCCTCCGCCTTGGGAGCAACGCG
AAACATGTTTCGCCCTTGGCGACTCTCTGCGCTCATCTCGTGGCGGCCAG
CGGTTGGCCTCAGGCATTCAGTGATCGTGGCGGGATTGTTGAAGTGTTTG
ATACTTTGTGTGTGGTTTTTTGCAACCGCGGCTGCAGGGGCGACAATGGT
GAGCCGGGGAGCACAAACAGGAGGAGGACTGAGTGGTTCTGTCGGCTTGA
ACGTAAACGTGTTTGATAAGGCATTCTATAGTTTTGCCGAGACCCTGGAA
ATCCTGCTAAGCGACGAAAAGGTCACCCCTTTTCCTCTCAAGAAGTACTT
CGTCATGTTCAACACCGCCTGGGTGACCACGAGCACGGCGCCGATCGCGG
CGGCGGGTGTGCTCGGTCAACCCCTAGGGCGAGCCATGGTCGCTACGGCC
TCGTCTCATGCCTTGTTCGCCGTGTCCAAGTTTACTCTGGCCTACGGAGC
AATGAACGCGGGCAGCGATGTCACTCGGGTACCGGTGGCTTCCACCTCCG
GACGATCGAAGCTGCGAGCTCCTTCTCCAAAGCCGTGGACCGTTCGGTCT
CGAACGCTGCTCCCTCTCAGGCGCGCACGACCCCCCGGTCCCGGGTTGCT
GCCCACGGGGGAAGCGGCCGGGGCAGAAACAGACAGTCGCATGACGATAC
AGATTCGCCGGTCTGCGAAGACCGTCCCACGCATATGGTTGATGGTAGTC
ACGGCGCTTGGAGGACCGGGGGTGGGGACAGTAGCGGCTTTAGCGACGCA
TCGTCTTGGGCTGATTACAATTCCGGCGGTGTGGTCGTCGGTTTCAAGAG
GTTCTGCTCTGGGGACGTTGATATCTGCCTCGCTCTGCCACGGAGGCGTG
GGGACATGTTTGGCAGCGCGGTGGGCGGTCTTCCAGGGAATATTTGGTGT
TTTTATCGCGTTTTTACTCAGCCTCGAGGTTCTCTTAGCGGTCAGCATAT
TCAACACCGTGGCGGGAGCTAGACGACGTAGCTTGGAGAACGACGCCGGA
GAAGGGACGGCGCGCGGCGGGTCGGACACGCCCAAGATACGAGATGGGGG
AGAAGAACGAGAAAAGGACAAAAATAACGAAAATAAGTCATAGATGCCGA
CGTCATCCAGGCGTGGAACACCCTCCGCCTTGGGAGCAACGCGAAACATG
TTTCGCCCTTGGCGACTCTCTGCGCTCATCTCGTGGCGGCCAGCGGTTGG
CCTCAGGCATTCAGTGATCGTGGCGGGATTGTTGAAGTGTTTGATACTTT
GTGTGTGGTTTTTTGCAACCGCGGCTGCAGGGGCGACAATGGTGAGCCGG
GGAGCACAAACAGGAGGAGGACTGAGTGGTTCTGTCGGCTTGAACGTAAA
CGTGTTTGATAAGGCATTCTATAGTTTTGCCGAGACCCTGGAAATCCTGC
TAAGCGACGAAAAGGTCACCCCTTTTCCTCTCAAGAAGTACTTCGTCATG
TTCAACACCGCCTGGGTGACCACGAGCACGGCGCCGATCGCGGCGGCGGG
TGTGCTCGGTCAACCCCTAGGGCGAGCCATGGTCGCTACGGCCTCGTCTC
ATGCCTTGTTCGCCGTGTCCAAGTTTACTCTGGCCTACGGAGCAATGAAC
GCGGGCAGCGATGTCACTCGGGTACCGGTGGCTTCCACCTCCGGACGATC
GAAGCTGCGAGCTCCTTCTCCAAAGCCGTGGACCGTTCGGTCTCGAACGC
TGCTCCCTCTCAGGCGCGCACGACCCCCCGGTCCCGGGTTGCTGCCCACG
GGGGAAGCGGCCGGGGCAGAAACAGACAGTCGCATGACGATACAGATTCG
CCGGTCTGCGAAGACCGTCCCACGCATATGGTTGATGGTAGTCACGGCGC
TTGGAGGACCGGGGGTGGGGACAGTAGCGGCTTTAGCGACGCATCGTCTT
GGGCTGATTACAATTCCGGCGGTGTGGTCGTCGGTTTCAAGAGGTTCTGC
TCTGGGGACGTTGATATCTGCCTCGCTCTGCCACGGAGGCGTGGGGACAT
GTTTGGCAGCGCGGTGGGCGGTCTTCCAGGGAATATTTGGTGTTTTTATC
GCGTTTTTACTCAGCCTCGAGGTTCTCTTAGCGGTCAGCATATTCAACAC
CGTGGCGGGAGCTAGACGACGTAGCTTGGAGAACGACGCCGGAGAAGGGA
CGGCGCGCGGCGGGTCGGACACGCCCAAGATACGAGATGGGGGAGAAGAA
CGAGAAAAGGACAAAAATAACGAAAATAAGTCATAG
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