prot_H-elongata_contig16799.4242.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig16799.4242.1
Unique Name	prot_H-elongata_contig16799.4242.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	381

Homology

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BLAST of mRNA_H-elongata_contig16799.4242.1 vs. uniprot
Match: D8LTH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTH3_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 9.140e-43
Identity = 108/254 (42.52%), Postives = 145/254 (57.09%), Query Frame = 0

Query:  118 VMFNTAWVTTSTAPIAAAGVLGQPLGRAMVATASSHALFAVSKFTLAYGAMNAGSDVTRVPVASTSGRSKLRAPSPKPWTVRSRTLLPLRRARPPGPGLLPT--GEAAGAETDSRMTIQIRRSAKTVPRIWLMVVTALGGPGVGTVAALATHRLGLITIPAVWSSVSRGSALGTLISASLCHGGVGTCLAARWAVFQGIFGVFIAFLLSLEVLLAVSIFN---TVAGARRR---SLENDAGEGTARGGSDTPKI 363
            +++ TAW+TTS  P+AAAGV+GQPL RA+VAT ++HA FA  KF+LA  AM+    V   P      R     P+P P T R+       R +   P L P   G  A         IQ+RRSA++VP++WLM +TA GGP +G V +    + GL+ +PA  SS+SRGS +  L++ +LC+GG GT + ARWAVFQGI G   A LLS   L+ V + N    VA +RR    SL    G   A+GG   P +
Sbjct:    2 ILYGTAWMTTSLGPVAAAGVIGQPLSRALVATCAAHASFAAIKFSLAILAMSNFPPVYAPPPR----RHPNNKPTP-PTTPRNXXXXKAPRRKLEFPSLSPRRRGPPAPVSAVPGTRIQVRRSARSVPKLWLMALTAAGGPAMGAVGSAVAWKAGLVAMPAALSSLSRGSVISALLAGTLCYGGAGTEVVARWAVFQGIMGAPFAALLSPSALMLVYLCNYYWRVAKSRRSGPGSLPPGVG-ANAKGGGGAPSV 249

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig16799.4242.1 vs. uniprot

BLAST of mRNA_H-elongata_contig16799.4242.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LTH3_ECTSI	9.140e-43	42.52	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 266..284
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 41..62
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 335..380
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 245..265
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 63..244
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 285..306
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..40
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 313..334
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 307..312
None	No IPR available	TMHMM	TMhelix		coord: 41..63
None	No IPR available	TMHMM	TMhelix		coord: 117..139
None	No IPR available	TMHMM	TMhelix		coord: 245..267
None	No IPR available	TMHMM	TMhelix		coord: 311..333

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig16799	contig	H-elongata_contig16799:3016..4158 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig16799.4242.1	mRNA_H-elongata_contig16799.4242.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig16799 2840..4492 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig16799.4242.1 ID=prot_H-elongata_contig16799.4242.1|Name=mRNA_H-elongata_contig16799.4242.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=381bp
MPTSSRRGTPSALGATRNMFRPWRLSALISWRPAVGLRHSVIVAGLLKCL
ILCVWFFATAAAGATMVSRGAQTGGGLSGSVGLNVNVFDKAFYSFAETLE
ILLSDEKVTPFPLKKYFVMFNTAWVTTSTAPIAAAGVLGQPLGRAMVATA
SSHALFAVSKFTLAYGAMNAGSDVTRVPVASTSGRSKLRAPSPKPWTVRS
RTLLPLRRARPPGPGLLPTGEAAGAETDSRMTIQIRRSAKTVPRIWLMVV
TALGGPGVGTVAALATHRLGLITIPAVWSSVSRGSALGTLISASLCHGGV
GTCLAARWAVFQGIFGVFIAFLLSLEVLLAVSIFNTVAGARRRSLENDAG
EGTARGGSDTPKIRDGGEEREKDKNNENKS*