mRNA_H-elongata_contig16783.4232.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig16783.4232.1 vs. uniprot
Match: D7FVN3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVN3_ECTSI) HSP 1 Score: 450 bits (1157), Expect = 2.170e-149 Identity = 280/501 (55.89%), Postives = 329/501 (65.67%), Query Frame = 1
Query: 1 QGVAGHRLDPTNAFDRALLAGARLTEAMRSAVERELGFTVSAGIASNKALAKLASSRNKPNKQTLVSAGASSEMLDSVPVRDLRGLGGKLGESVASWSGAETASELKRFTQAELVTNFGPKTGQWLWRICRGMDDEAVTPNLRPKSLSVCKSFVLVHDRETVLMWMKLLTKELADRIVVDRKTWSRRATKLTVQIISLRAAISTIQTSSTAVKGDSSKSTSLTRSRTVDIPGGGEPPTAESLVSEAMSVFEKTENALPCSRLALTAHDFVGLVSGRGSIASFMRSPSPKPTSRPTRDNLISKPACARSAVSDEGKSAGLLPQASKDVGNRVECDGNGANGGDALSPEGAGS------------------RGGDGGGSEIS-SKNYTG-----------RLNPSP-EPGDERCPNCGDAIASKKFLEHLDFHFAQGLQERYTREVDVAADIAARASGSGAAKRRSAEGDERGPTRRPKAKQPVRRGSNGGTTARIDSFFKPA 1410
QG AGHR+DPTNAFDRALLAGARLT AMR AVE+ELGFTVSAGIASNK LAKLASS NKPNKQT+V AGASS+MLD+VP+R +RGLGGKLGE+V SWS AE AS+LKRF+Q +LV NFG KTG+WLWR CRGMDDE V PNL+PKSLSVCKSF V D E+VL WM+LL EL+ RI VDR+ WSRRATKLT+Q+ISL+ Q A G+ +TS TRSRTVDIPGGGE PT SLVSEAM+VF KT+NALPCSRLALTAH+F GL+SGRGSIASF+R+ P ++ ++ S G+ P A + + D +G GG PEG R G S + S+N+ R PSP PG ERCP CG +A + EHLDFH+A+GLQERYTRE DVA D+AAR S +R + E G +R AK +R + G RIDSFFKP
Sbjct: 164 QGTAGHRVDPTNAFDRALLAGARLTAAMRLAVEQELGFTVSAGIASNKVLAKLASSINKPNKQTVVPAGASSDMLDTVPLRSVRGLGGKLGETVVSWSKAEKASDLKRFSQQDLVGNFGTKTGEWLWRACRGMDDEPVAPNLKPKSLSVCKSFTPVRDEESVLNWMRLLCTELSQRIAVDREAWSRRATKLTLQMISLKPGSRANQRD--AGGGNGKSNTSTTRSRTVDIPGGGESPTTASLVSEAMAVFAKTDNALPCSRLALTAHEFCGLISGRGSIASFLRA-------LPXXXXXXXXXXXXXTSPLEKWGSKGVKPDAKQ----ALAVDPSGQAGGGRSLPEGDDEDVPGTETAEASIGPRDVPRVGSKDDSRVDRSRNFQPSSHLAGAACDERTAPSPLRPGYERCPKCGKVLAPEDLQEHLDFHYAEGLQERYTREGDVARDMAARMSDREGLPKRKIQ--EAGGGKR--AKSQTKRPAAG---LRIDSFFKPT 644
BLAST of mRNA_H-elongata_contig16783.4232.1 vs. uniprot
Match: A0A0G4ETT1_VITBC (UmuC domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ETT1_VITBC) HSP 1 Score: 171 bits (434), Expect = 2.320e-43 Identity = 109/276 (39.49%), Postives = 156/276 (56.52%), Query Frame = 1
Query: 43 DRALLAGARLTEAMRSAVERELGFTVSAGIASNKALAKLASSRNKPNKQTLVSAGASSEMLDSVPVRDLRGLGGKLGESVAS-WSGAETASELKRFTQAELVTNFGPKTGQWLWRICRGMDDEAVTPNLRPKSLSVCKSFVLVHDRETVLMWMKLLTKELADRIVVDRKTWSRRATKLTVQIISLRAAISTIQTSSTAVKGDSSKSTSLTRSRTVDIPGGGEPP---TAESLVSEAMSVFEKT--ENALPCSRLALTAHDFVGLVSGRGSIASFMR 852
+ +L+ GA L +R AV E FTVSAGI+ NK L+K AS+++KPN+QTLV + +M+ +P+RD+RGLGGKLGE+V+ + A TA +L+ + EL F TG WLWR+CRGMDDE V+PNL+PKSL KSF V E + W+ +L +E+ DR+ D + RRA L Q L A RSR+ +P G +P + + LV+ +++ K + LPCSR+ + A DF + S SI S+ +
Sbjct: 198 EASLVVGAVLIARLRKAVLDETQFTVSAGISHNKMLSKQASAKHKPNRQTLVPTSSIDDMMGHLPLRDVRGLGGKLGEAVSRVFPDATTAKDLQAHSLEELKRTFNDGTGTWLWRVCRGMDDEQVSPNLKPKSLLAFKSFRPVRKMEDLERWLGVLAEEVCDRMQADTEAHRRRAKTLMAQHRGLSGAA---------------------RSRSGPMPRGKDPHGLLSKDELVAAGLALLRKLPEDELLPCSRIGMGAQDFEDIDSQTASITSYFK 452
BLAST of mRNA_H-elongata_contig16783.4232.1 vs. uniprot
Match: A0A835YYX1_9STRA (UmuC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYX1_9STRA) HSP 1 Score: 169 bits (429), Expect = 9.580e-42 Identity = 114/266 (42.86%), Postives = 160/266 (60.15%), Query Frame = 1
Query: 4 GVAGHRLDPTNAFDRALLAGARLTEAMRSAVERELGFTVSAGIASNKALAKLASSRNKPNKQTLVSAGASSEMLDSVPVRDLRGLGGKLGESVASWSGAETASELKRFTQAELVTNFGPKTGQWLWRICRGMDDEAVTPNLRPKSLSVCKSFVL-VHDRETVLMWMKLLTKELADRIVVDRKTWSRRATKLTVQIISLRAAISTIQTSSTAVKGDSSKSTSLT-RSRTVDIPGGGEP---PTAESLVSEAMSVFEK-TENALPCSR 783
GV G +D +NA D LL GAR+T +R+AV ELG+TVSAGIA K AKLAS+R+KP+KQTLV A A++ +L VP+R++RGLGGKLG VA+ + A+ ++L+R+++A+L + FG K G WL I +G+DDE V N+ PKSL+ KS + V W+ +L EL +R D RR T L VQ + V G ++ T +T RS + + GG P+AE LV+ A+S+F K + LPC+R
Sbjct: 592 GVDGRGVDASNAHDALLLEGARITAHVRAAVRAELGYTVSAGIAHCKMFAKLASARHKPDKQTLVPASATAHLLAGVPLREVRGLGGKLGADVAARTHAQNLADLQRYSEAQLRSLFGDKGG-WLASIAQGIDDEPVVANIAPKSLNCFKSLPEPARSADAVRAWLHVLGGELLERAAADAAAHRRRPTTLVVQ----HRGVLRADHRDNWVAGRTADLTGMTARSARLPVGSGGGALSLPSAEQLVAAALSLFHKCADQPLPCTR 852
BLAST of mRNA_H-elongata_contig16783.4232.1 vs. uniprot
Match: A0A7S2SV00_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV00_9STRA) HSP 1 Score: 162 bits (411), Expect = 5.610e-40 Identity = 163/538 (30.30%), Postives = 244/538 (45.35%), Query Frame = 1
Query: 1 QGVAGHRLDPTNAF-DRALLAGARLTEAMRSAVERELGFTVSAGIASNKALAKLASSRNKPNKQTLVSAGASSEMLDSVPVRDLRGLGGKLGESVASW---------SGAETASELKRFTQAELVTNFGPKTGQWLWRICRGMDDEAVTPNLRPKSLSVCKSFVLVHDRETVLMWMKLLTKELADRIVVDRKTWSRRATKLTVQIIS-------------LRAAISTIQTSSTAVKGD---------SSKSTSLTRSRTVD------------IPGGGEPPTAES--------------LVSEAMSVFEKTEN-----ALPCSRLALTAHDFVGLVSGRGSIASFMRSPSPKPTSRPTRDNLISKPACARSAVSDEGKSAGLLPQASKDVGNRVECDGNGANGGDALSPEGAGSRGGDGGGSEISSKNYTGRLNPSPEPGDERCPNCGDAIASKKFLEHLDFHFAQGLQERY-TREVDVAADIAARASGSGAAKRRSAEGDERGPTRRPKAKQPVRRG--SNG----GTTARIDSFFK 1404
Q V G LDPT+ D LL GA + +R + E FTVSAGIA K AK+AS+++KPNKQT+V ++ E++ ++ + D+RGLGGKLGE V+++ G A L+ + L+ FG KTG+WL RICRG+D + V+PNLRPKS++ KSF + +L W+ +L EL DRI D + RR LT+Q S + + ++ +++ S A+ SSK + + ++VD G EP +E L S A V K EN LPCSR+AL DF ++ F+++ +P R K + SA S +G + G P G DA+ G+ ++ G G+ + + C CG +IA EH+DFHFA +Q+++ ++E ++D R + GP R+ KA + G S+G G +RIDSFF+
Sbjct: 166 QVVGGCPLDPTDTHGDALLLMGATFADELRRKIREETTFTVSAGIAHGKMFAKIASAKHKPNKQTIVPFASTEELMRTIELSDIRGLGGKLGEEVSTFLRSQDTPKTDGTFRAIALQAVPERLLIRQFGEKTGRWLHRICRGLDTDPVSPNLRPKSINCFKSFSTITAMAPLLRWLDVLCGELTDRIAADHALFKRRPRVLTLQHRSTLRPDHLKNWKAGVTSELTGMRSRSAALPPSLVSLILACYSSKQSKKRKRQSVDGAATPLVDSIQVHSGDAEPLGSEGETTPLTSSPAFPAELQSLARLVMSKLENDSGVPTLPCSRIALGVSDFCSESKASRVLSDFLKA-------QPCR-----KTSAESSAESSDGHT-GPRP------------------GHDAVGDSGSPAQAAAGDGNLVRTT----------------CERCGASIALDAIQEHMDFHFAADVQQQWRSQEAKQSSDKQQR---------------KPGPVRK-KATTKTKTGAASSGLASHGPFSRIDSFFQ 640
BLAST of mRNA_H-elongata_contig16783.4232.1 vs. uniprot
Match: A0A8J4GB80_9CHLO (UmuC domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GB80_9CHLO) HSP 1 Score: 155 bits (391), Expect = 9.480e-37 Identity = 103/270 (38.15%), Postives = 140/270 (51.85%), Query Frame = 1
Query: 7 VAGHRLDPTNAFDRALLAGARLTEAMRSAVERELGFTVSAGIASNKALAKLASSRNKPNKQTLVSAGASSEMLDSVPVRDLRGLGGKLGESVASWSGAETASELKRFTQAELVTNFGPKTGQWLWRICRGMDDEAVTPNLRPKSLSVCKSFVLVHDRETVLMWMKLLTKELADRIVVDRKTWSRRATKLTVQIISLRAAISTIQTSSTAVKGDSSKSTSLTRSRTVDIP---GGGEPPTAESLVSEAMSVFEKTENALPCSRLALTAHDF 807
V G LD + DR LLAGA + MR AV EL FT SAG+A+NK LAK+ S+RNKP+KQT+V +++ +P+ LRGLGGKLG S+ GA A + ++ + +L G +TG W+ ++ RG E VTP +PKSL CKSF D + W+ +L +ELA R D T RRA L + + R R+V P G E P+ L AM + + +ALPCSRLA+ A +F
Sbjct: 284 VLGGPLDLRSDTDRRLLAGAIIALRMRRAVRSELDFTCSAGVATNKLLAKVGSARNKPDKQTVVLPRGVPDLMQDMPLSKLRGLGGKLGASLEQHFGATNAGQAQQLSLEQLQRVLGERTGLWVSQVVRGQCSEPVTPKDKPKSLLSCKSFESTRDLGDLGRWLSILAEELAQRCREDEATHRRRARTLVLHYRGIGP-----------------------RERSVRCPMPQHGREGPSPAVLAKAAMEMLRRQSDALPCSRLAIAATEF 530
BLAST of mRNA_H-elongata_contig16783.4232.1 vs. uniprot
Match: A0A8J4B683_9CHLO (UmuC domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4B683_9CHLO) HSP 1 Score: 153 bits (386), Expect = 3.800e-36 Identity = 102/270 (37.78%), Postives = 138/270 (51.11%), Query Frame = 1
Query: 7 VAGHRLDPTNAFDRALLAGARLTEAMRSAVERELGFTVSAGIASNKALAKLASSRNKPNKQTLVSAGASSEMLDSVPVRDLRGLGGKLGESVASWSGAETASELKRFTQAELVTNFGPKTGQWLWRICRGMDDEAVTPNLRPKSLSVCKSFVLVHDRETVLMWMKLLTKELADRIVVDRKTWSRRATKLTVQIISLRAAISTIQTSSTAVKGDSSKSTSLTRSRTVDIP---GGGEPPTAESLVSEAMSVFEKTENALPCSRLALTAHDF 807
V G LD N DR LLAGA + MR A+ EL FT SAG+A+NK LAK+ S+RNKP+KQT+V +++ +P+ LRGLGGKLG S+ GA A ++++ +L G +TG W+ ++ RG E VTP +PKSL CKSF D + W+ +L +ELA R D RRA L + + R R+V P G E P L AM + + +ALPCSRLA+ A +F
Sbjct: 147 VVGGPLDLLNDTDRRLLAGAIIALRMRRAIRSELDFTCSAGVATNKLLAKVGSARNKPDKQTMVLPRGVPDLMQDMPLSKLRGLGGKLGASLEQHFGATNAGQVQQLPLEQLQRVLGERTGLWVSQVVRGQCSEPVTPKDKPKSLLSCKSFEPTRDLGDLGRWLAILAEELAQRSREDEAAHRRRARTLVLHYRGIGP-----------------------RERSVRCPMPQHGREGPQPAVLAKAAMEMLRRQPDALPCSRLAIAATEF 393
BLAST of mRNA_H-elongata_contig16783.4232.1 vs. uniprot
Match: A0A8C4NJT5_DICLA (Polymerase (DNA directed), eta n=5 Tax=Moronidae TaxID=42148 RepID=A0A8C4NJT5_DICLA) HSP 1 Score: 150 bits (380), Expect = 1.490e-35 Identity = 84/198 (42.42%), Postives = 119/198 (60.10%), Query Frame = 1
Query: 1 QGVAGHRLDPTNAFDRALLAGARLTEAMRSAVERELGFTVSAGIASNKALAKLASSRNKPNKQTLVSAGASSEMLDSVPVRDLRGLGGKLGESVASWSGAETASELKRFTQAELVTNFGPKTGQWLWRICRGMDDEAVTPNLRPKSLSVCKSF---VLVHDRETVLMWMKLLTKELADRIVVDRKTWSRRATKLTVQI 585
+ + G L ++ + L GA + E MR+AVE+ GF SAGI+ NK LAKLA NKPN+QT++ + +E+ S+P+ +R LGGKLG S+ G E +L RF+QA+L NFG KTGQWL+ +CRG+D EAV P PKS+ K+F + +E V W+ L EL +R+ D++ R A LTV +
Sbjct: 180 ESLPGPPLGEQSSAELQLTVGALIVEEMRAAVEKHTGFRCSAGISHNKVLAKLACGLNKPNRQTILPLDSVTELFSSLPISKIRNLGGKLGASITETLGIENMGDLTRFSQAQLEQNFGEKTGQWLYDLCRGIDFEAVKPRQLPKSIGCSKNFPGKTSLATKEQVQYWLHQLALELEERLTKDKEVNGRVAKLLTVGV 377
BLAST of mRNA_H-elongata_contig16783.4232.1 vs. uniprot
Match: A0A671E7H5_RHIFE (DNA polymerase eta n=4 Tax=Microchiroptera TaxID=30560 RepID=A0A671E7H5_RHIFE) HSP 1 Score: 150 bits (379), Expect = 1.910e-35 Identity = 83/192 (43.23%), Postives = 119/192 (61.98%), Query Frame = 1
Query: 19 RLDPTNAFDRALLAGARLTEAMRSAVERELGFTVSAGIASNKALAKLASSRNKPNKQTLVSAGASSEMLDSVPVRDLRGLGGKLGESVASWSGAETASELKRFTQAELVTNFGPKTGQWLWRICRGMDDEAVTPNLRPKSLSVCKSF---VLVHDRETVLMWMKLLTKELADRIVVDRKTWSRRATKLTVQI 585
++D T + D L GA + E MR+A+ER+ GF SAGI+ NK LAKLA NKPN+QTLVS G+ ++ +P+ +R LGGKLG SV G E EL +FT+++L ++FG K+G WL+ +CRG++ + V P PK++ K+F + RE V W+ L +EL +R+ DR R AT+L V I
Sbjct: 179 QIDNTTSPDLQLTVGAVIVEEMRAAIERQTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSHMPIGKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKSGSWLYAMCRGIEHDPVKPRQIPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLAVSI 370
BLAST of mRNA_H-elongata_contig16783.4232.1 vs. uniprot
Match: A0A0U9HQB4_KLENI (Putative Y-family DNA polymerase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HQB4_KLENI) HSP 1 Score: 149 bits (376), Expect = 8.800e-35 Identity = 83/180 (46.11%), Postives = 112/180 (62.22%), Query Frame = 1
Query: 22 LDPTNAFDRALLAGARLTEAMRSAVERELGFTVSAGIASNKALAKLASSRNKPNKQTLVSAGASSEMLDSVPVRDLRGLGGKLGESVASWSGAETASELKRFTQAELVTNFGPKTGQWLWRICRGMDDEAVTPNLRPKSLSVCKSFVLVHDRETVLMWMKLLTKELADRIVVDRKTWSRR 561
LDP+N +DR LLAGA + MR AV ELG+T SAGIA NK LAKLAS+ NKP KQT+V+ A ++ P+R +R LGGK+G+ + G ETA ++++ +A L+ G K G W++R RG+ DE V KS+ KS+ L + E V W++LL+ ELA RI D K RR
Sbjct: 173 LDPSNEYDRRLLAGATIVAQMREAVFHELGYTCSAGIAPNKLLAKLASAMNKPYKQTVVTPRAIPGLMKDFPMRKIRNLGGKMGKELCDTLGCETAGDVQKIPEAVLIEKLGDKMGPWVFRAVRGIHDEPVQTRQISKSMLAAKSYSLTNSIEDVRHWLRLLSMELAARIEYDVKLNKRR 352
BLAST of mRNA_H-elongata_contig16783.4232.1 vs. uniprot
Match: A0A8B7RCA4_HIPAR (DNA polymerase eta isoform X2 n=2 Tax=Microchiroptera TaxID=30560 RepID=A0A8B7RCA4_HIPAR) HSP 1 Score: 146 bits (368), Expect = 2.190e-34 Identity = 80/184 (43.48%), Postives = 115/184 (62.50%), Query Frame = 1
Query: 43 DRALLAGARLTEAMRSAVERELGFTVSAGIASNKALAKLASSRNKPNKQTLVSAGASSEMLDSVPVRDLRGLGGKLGESVASWSGAETASELKRFTQAELVTNFGPKTGQWLWRICRGMDDEAVTPNLRPKSLSVCKSF---VLVHDRETVLMWMKLLTKELADRIVVDRKTWSRRATKLTVQI 585
D L GA + E MR+A+ER+ GF SAGI+ NK LAKLA NKPN+QTLVS G+ ++ +P+ +R LGGKLG SV G E EL +FT+++L ++FG K+G WL+ +CRG++ + V P PK++ K+F + + V W+ L +EL +R++ DR R AT+LTV I
Sbjct: 63 DLQLTVGAVIVEEMRAAIERQTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSHMPIGKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKSGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATPDQVQWWLWQLAQELEERLIKDRNDNDRVATQLTVSI 246 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16783.4232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16783.4232.1 >prot_H-elongata_contig16783.4232.1 ID=prot_H-elongata_contig16783.4232.1|Name=mRNA_H-elongata_contig16783.4232.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=444bp MRSAVERELGFTVSAGIASNKALAKLASSRNKPNKQTLVSAGASSEMLDSback to top mRNA from alignment at H-elongata_contig16783:3841..7267- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16783.4232.1 ID=mRNA_H-elongata_contig16783.4232.1|Name=mRNA_H-elongata_contig16783.4232.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3427bp|location=Sequence derived from alignment at H-elongata_contig16783:3841..7267- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16783:3841..7267- >mRNA_H-elongata_contig16783.4232.1 ID=mRNA_H-elongata_contig16783.4232.1|Name=mRNA_H-elongata_contig16783.4232.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2664bp|location=Sequence derived from alignment at H-elongata_contig16783:3841..7267- (Himanthalia elongata Himel1 dioecious)back to top |