mRNA_H-elongata_contig16783.4232.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16783.4232.1
Unique NamemRNA_H-elongata_contig16783.4232.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig16783.4232.1 vs. uniprot
Match: D7FVN3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVN3_ECTSI)

HSP 1 Score: 450 bits (1157), Expect = 2.170e-149
Identity = 280/501 (55.89%), Postives = 329/501 (65.67%), Query Frame = 1
Query:    1 QGVAGHRLDPTNAFDRALLAGARLTEAMRSAVERELGFTVSAGIASNKALAKLASSRNKPNKQTLVSAGASSEMLDSVPVRDLRGLGGKLGESVASWSGAETASELKRFTQAELVTNFGPKTGQWLWRICRGMDDEAVTPNLRPKSLSVCKSFVLVHDRETVLMWMKLLTKELADRIVVDRKTWSRRATKLTVQIISLRAAISTIQTSSTAVKGDSSKSTSLTRSRTVDIPGGGEPPTAESLVSEAMSVFEKTENALPCSRLALTAHDFVGLVSGRGSIASFMRSPSPKPTSRPTRDNLISKPACARSAVSDEGKSAGLLPQASKDVGNRVECDGNGANGGDALSPEGAGS------------------RGGDGGGSEIS-SKNYTG-----------RLNPSP-EPGDERCPNCGDAIASKKFLEHLDFHFAQGLQERYTREVDVAADIAARASGSGAAKRRSAEGDERGPTRRPKAKQPVRRGSNGGTTARIDSFFKPA 1410
            QG AGHR+DPTNAFDRALLAGARLT AMR AVE+ELGFTVSAGIASNK LAKLASS NKPNKQT+V AGASS+MLD+VP+R +RGLGGKLGE+V SWS AE AS+LKRF+Q +LV NFG KTG+WLWR CRGMDDE V PNL+PKSLSVCKSF  V D E+VL WM+LL  EL+ RI VDR+ WSRRATKLT+Q+ISL+      Q    A  G+   +TS TRSRTVDIPGGGE PT  SLVSEAM+VF KT+NALPCSRLALTAH+F GL+SGRGSIASF+R+        P             ++  ++  S G+ P A +     +  D +G  GG    PEG                     R G    S +  S+N+             R  PSP  PG ERCP CG  +A +   EHLDFH+A+GLQERYTRE DVA D+AAR S      +R  +  E G  +R  AK   +R + G    RIDSFFKP 
Sbjct:  164 QGTAGHRVDPTNAFDRALLAGARLTAAMRLAVEQELGFTVSAGIASNKVLAKLASSINKPNKQTVVPAGASSDMLDTVPLRSVRGLGGKLGETVVSWSKAEKASDLKRFSQQDLVGNFGTKTGEWLWRACRGMDDEPVAPNLKPKSLSVCKSFTPVRDEESVLNWMRLLCTELSQRIAVDREAWSRRATKLTLQMISLKPGSRANQRD--AGGGNGKSNTSTTRSRTVDIPGGGESPTTASLVSEAMAVFAKTDNALPCSRLALTAHEFCGLISGRGSIASFLRA-------LPXXXXXXXXXXXXXTSPLEKWGSKGVKPDAKQ----ALAVDPSGQAGGGRSLPEGDDEDVPGTETAEASIGPRDVPRVGSKDDSRVDRSRNFQPSSHLAGAACDERTAPSPLRPGYERCPKCGKVLAPEDLQEHLDFHYAEGLQERYTREGDVARDMAARMSDREGLPKRKIQ--EAGGGKR--AKSQTKRPAAG---LRIDSFFKPT 644          
BLAST of mRNA_H-elongata_contig16783.4232.1 vs. uniprot
Match: A0A0G4ETT1_VITBC (UmuC domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ETT1_VITBC)

HSP 1 Score: 171 bits (434), Expect = 2.320e-43
Identity = 109/276 (39.49%), Postives = 156/276 (56.52%), Query Frame = 1
Query:   43 DRALLAGARLTEAMRSAVERELGFTVSAGIASNKALAKLASSRNKPNKQTLVSAGASSEMLDSVPVRDLRGLGGKLGESVAS-WSGAETASELKRFTQAELVTNFGPKTGQWLWRICRGMDDEAVTPNLRPKSLSVCKSFVLVHDRETVLMWMKLLTKELADRIVVDRKTWSRRATKLTVQIISLRAAISTIQTSSTAVKGDSSKSTSLTRSRTVDIPGGGEPP---TAESLVSEAMSVFEKT--ENALPCSRLALTAHDFVGLVSGRGSIASFMR 852
            + +L+ GA L   +R AV  E  FTVSAGI+ NK L+K AS+++KPN+QTLV   +  +M+  +P+RD+RGLGGKLGE+V+  +  A TA +L+  +  EL   F   TG WLWR+CRGMDDE V+PNL+PKSL   KSF  V   E +  W+ +L +E+ DR+  D +   RRA  L  Q   L  A                      RSR+  +P G +P    + + LV+  +++  K   +  LPCSR+ + A DF  + S   SI S+ +
Sbjct:  198 EASLVVGAVLIARLRKAVLDETQFTVSAGISHNKMLSKQASAKHKPNRQTLVPTSSIDDMMGHLPLRDVRGLGGKLGEAVSRVFPDATTAKDLQAHSLEELKRTFNDGTGTWLWRVCRGMDDEQVSPNLKPKSLLAFKSFRPVRKMEDLERWLGVLAEEVCDRMQADTEAHRRRAKTLMAQHRGLSGAA---------------------RSRSGPMPRGKDPHGLLSKDELVAAGLALLRKLPEDELLPCSRIGMGAQDFEDIDSQTASITSYFK 452          
BLAST of mRNA_H-elongata_contig16783.4232.1 vs. uniprot
Match: A0A835YYX1_9STRA (UmuC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYX1_9STRA)

HSP 1 Score: 169 bits (429), Expect = 9.580e-42
Identity = 114/266 (42.86%), Postives = 160/266 (60.15%), Query Frame = 1
Query:    4 GVAGHRLDPTNAFDRALLAGARLTEAMRSAVERELGFTVSAGIASNKALAKLASSRNKPNKQTLVSAGASSEMLDSVPVRDLRGLGGKLGESVASWSGAETASELKRFTQAELVTNFGPKTGQWLWRICRGMDDEAVTPNLRPKSLSVCKSFVL-VHDRETVLMWMKLLTKELADRIVVDRKTWSRRATKLTVQIISLRAAISTIQTSSTAVKGDSSKSTSLT-RSRTVDIPGGGEP---PTAESLVSEAMSVFEK-TENALPCSR 783
            GV G  +D +NA D  LL GAR+T  +R+AV  ELG+TVSAGIA  K  AKLAS+R+KP+KQTLV A A++ +L  VP+R++RGLGGKLG  VA+ + A+  ++L+R+++A+L + FG K G WL  I +G+DDE V  N+ PKSL+  KS        + V  W+ +L  EL +R   D     RR T L VQ       +         V G ++  T +T RS  + +  GG     P+AE LV+ A+S+F K  +  LPC+R
Sbjct:  592 GVDGRGVDASNAHDALLLEGARITAHVRAAVRAELGYTVSAGIAHCKMFAKLASARHKPDKQTLVPASATAHLLAGVPLREVRGLGGKLGADVAARTHAQNLADLQRYSEAQLRSLFGDKGG-WLASIAQGIDDEPVVANIAPKSLNCFKSLPEPARSADAVRAWLHVLGGELLERAAADAAAHRRRPTTLVVQ----HRGVLRADHRDNWVAGRTADLTGMTARSARLPVGSGGGALSLPSAEQLVAAALSLFHKCADQPLPCTR 852          
BLAST of mRNA_H-elongata_contig16783.4232.1 vs. uniprot
Match: A0A7S2SV00_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV00_9STRA)

HSP 1 Score: 162 bits (411), Expect = 5.610e-40
Identity = 163/538 (30.30%), Postives = 244/538 (45.35%), Query Frame = 1
Query:    1 QGVAGHRLDPTNAF-DRALLAGARLTEAMRSAVERELGFTVSAGIASNKALAKLASSRNKPNKQTLVSAGASSEMLDSVPVRDLRGLGGKLGESVASW---------SGAETASELKRFTQAELVTNFGPKTGQWLWRICRGMDDEAVTPNLRPKSLSVCKSFVLVHDRETVLMWMKLLTKELADRIVVDRKTWSRRATKLTVQIIS-------------LRAAISTIQTSSTAVKGD---------SSKSTSLTRSRTVD------------IPGGGEPPTAES--------------LVSEAMSVFEKTEN-----ALPCSRLALTAHDFVGLVSGRGSIASFMRSPSPKPTSRPTRDNLISKPACARSAVSDEGKSAGLLPQASKDVGNRVECDGNGANGGDALSPEGAGSRGGDGGGSEISSKNYTGRLNPSPEPGDERCPNCGDAIASKKFLEHLDFHFAQGLQERY-TREVDVAADIAARASGSGAAKRRSAEGDERGPTRRPKAKQPVRRG--SNG----GTTARIDSFFK 1404
            Q V G  LDPT+   D  LL GA   + +R  +  E  FTVSAGIA  K  AK+AS+++KPNKQT+V   ++ E++ ++ + D+RGLGGKLGE V+++          G   A  L+   +  L+  FG KTG+WL RICRG+D + V+PNLRPKS++  KSF  +     +L W+ +L  EL DRI  D   + RR   LT+Q  S             + + ++ +++ S A+            SSK +   + ++VD              G  EP  +E               L S A  V  K EN      LPCSR+AL   DF         ++ F+++       +P R     K +   SA S +G + G  P                  G DA+   G+ ++   G G+ + +                 C  CG +IA     EH+DFHFA  +Q+++ ++E   ++D   R               + GP R+ KA    + G  S+G    G  +RIDSFF+
Sbjct:  166 QVVGGCPLDPTDTHGDALLLMGATFADELRRKIREETTFTVSAGIAHGKMFAKIASAKHKPNKQTIVPFASTEELMRTIELSDIRGLGGKLGEEVSTFLRSQDTPKTDGTFRAIALQAVPERLLIRQFGEKTGRWLHRICRGLDTDPVSPNLRPKSINCFKSFSTITAMAPLLRWLDVLCGELTDRIAADHALFKRRPRVLTLQHRSTLRPDHLKNWKAGVTSELTGMRSRSAALPPSLVSLILACYSSKQSKKRKRQSVDGAATPLVDSIQVHSGDAEPLGSEGETTPLTSSPAFPAELQSLARLVMSKLENDSGVPTLPCSRIALGVSDFCSESKASRVLSDFLKA-------QPCR-----KTSAESSAESSDGHT-GPRP------------------GHDAVGDSGSPAQAAAGDGNLVRTT----------------CERCGASIALDAIQEHMDFHFAADVQQQWRSQEAKQSSDKQQR---------------KPGPVRK-KATTKTKTGAASSGLASHGPFSRIDSFFQ 640          
BLAST of mRNA_H-elongata_contig16783.4232.1 vs. uniprot
Match: A0A8J4GB80_9CHLO (UmuC domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GB80_9CHLO)

HSP 1 Score: 155 bits (391), Expect = 9.480e-37
Identity = 103/270 (38.15%), Postives = 140/270 (51.85%), Query Frame = 1
Query:    7 VAGHRLDPTNAFDRALLAGARLTEAMRSAVERELGFTVSAGIASNKALAKLASSRNKPNKQTLVSAGASSEMLDSVPVRDLRGLGGKLGESVASWSGAETASELKRFTQAELVTNFGPKTGQWLWRICRGMDDEAVTPNLRPKSLSVCKSFVLVHDRETVLMWMKLLTKELADRIVVDRKTWSRRATKLTVQIISLRAAISTIQTSSTAVKGDSSKSTSLTRSRTVDIP---GGGEPPTAESLVSEAMSVFEKTENALPCSRLALTAHDF 807
            V G  LD  +  DR LLAGA +   MR AV  EL FT SAG+A+NK LAK+ S+RNKP+KQT+V      +++  +P+  LRGLGGKLG S+    GA  A + ++ +  +L    G +TG W+ ++ RG   E VTP  +PKSL  CKSF    D   +  W+ +L +ELA R   D  T  RRA  L +    +                         R R+V  P    G E P+   L   AM +  +  +ALPCSRLA+ A +F
Sbjct:  284 VLGGPLDLRSDTDRRLLAGAIIALRMRRAVRSELDFTCSAGVATNKLLAKVGSARNKPDKQTVVLPRGVPDLMQDMPLSKLRGLGGKLGASLEQHFGATNAGQAQQLSLEQLQRVLGERTGLWVSQVVRGQCSEPVTPKDKPKSLLSCKSFESTRDLGDLGRWLSILAEELAQRCREDEATHRRRARTLVLHYRGIGP-----------------------RERSVRCPMPQHGREGPSPAVLAKAAMEMLRRQSDALPCSRLAIAATEF 530          
BLAST of mRNA_H-elongata_contig16783.4232.1 vs. uniprot
Match: A0A8J4B683_9CHLO (UmuC domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4B683_9CHLO)

HSP 1 Score: 153 bits (386), Expect = 3.800e-36
Identity = 102/270 (37.78%), Postives = 138/270 (51.11%), Query Frame = 1
Query:    7 VAGHRLDPTNAFDRALLAGARLTEAMRSAVERELGFTVSAGIASNKALAKLASSRNKPNKQTLVSAGASSEMLDSVPVRDLRGLGGKLGESVASWSGAETASELKRFTQAELVTNFGPKTGQWLWRICRGMDDEAVTPNLRPKSLSVCKSFVLVHDRETVLMWMKLLTKELADRIVVDRKTWSRRATKLTVQIISLRAAISTIQTSSTAVKGDSSKSTSLTRSRTVDIP---GGGEPPTAESLVSEAMSVFEKTENALPCSRLALTAHDF 807
            V G  LD  N  DR LLAGA +   MR A+  EL FT SAG+A+NK LAK+ S+RNKP+KQT+V      +++  +P+  LRGLGGKLG S+    GA  A ++++    +L    G +TG W+ ++ RG   E VTP  +PKSL  CKSF    D   +  W+ +L +ELA R   D     RRA  L +    +                         R R+V  P    G E P    L   AM +  +  +ALPCSRLA+ A +F
Sbjct:  147 VVGGPLDLLNDTDRRLLAGAIIALRMRRAIRSELDFTCSAGVATNKLLAKVGSARNKPDKQTMVLPRGVPDLMQDMPLSKLRGLGGKLGASLEQHFGATNAGQVQQLPLEQLQRVLGERTGLWVSQVVRGQCSEPVTPKDKPKSLLSCKSFEPTRDLGDLGRWLAILAEELAQRSREDEAAHRRRARTLVLHYRGIGP-----------------------RERSVRCPMPQHGREGPQPAVLAKAAMEMLRRQPDALPCSRLAIAATEF 393          
BLAST of mRNA_H-elongata_contig16783.4232.1 vs. uniprot
Match: A0A8C4NJT5_DICLA (Polymerase (DNA directed), eta n=5 Tax=Moronidae TaxID=42148 RepID=A0A8C4NJT5_DICLA)

HSP 1 Score: 150 bits (380), Expect = 1.490e-35
Identity = 84/198 (42.42%), Postives = 119/198 (60.10%), Query Frame = 1
Query:    1 QGVAGHRLDPTNAFDRALLAGARLTEAMRSAVERELGFTVSAGIASNKALAKLASSRNKPNKQTLVSAGASSEMLDSVPVRDLRGLGGKLGESVASWSGAETASELKRFTQAELVTNFGPKTGQWLWRICRGMDDEAVTPNLRPKSLSVCKSF---VLVHDRETVLMWMKLLTKELADRIVVDRKTWSRRATKLTVQI 585
            + + G  L   ++ +  L  GA + E MR+AVE+  GF  SAGI+ NK LAKLA   NKPN+QT++   + +E+  S+P+  +R LGGKLG S+    G E   +L RF+QA+L  NFG KTGQWL+ +CRG+D EAV P   PKS+   K+F     +  +E V  W+  L  EL +R+  D++   R A  LTV +
Sbjct:  180 ESLPGPPLGEQSSAELQLTVGALIVEEMRAAVEKHTGFRCSAGISHNKVLAKLACGLNKPNRQTILPLDSVTELFSSLPISKIRNLGGKLGASITETLGIENMGDLTRFSQAQLEQNFGEKTGQWLYDLCRGIDFEAVKPRQLPKSIGCSKNFPGKTSLATKEQVQYWLHQLALELEERLTKDKEVNGRVAKLLTVGV 377          
BLAST of mRNA_H-elongata_contig16783.4232.1 vs. uniprot
Match: A0A671E7H5_RHIFE (DNA polymerase eta n=4 Tax=Microchiroptera TaxID=30560 RepID=A0A671E7H5_RHIFE)

HSP 1 Score: 150 bits (379), Expect = 1.910e-35
Identity = 83/192 (43.23%), Postives = 119/192 (61.98%), Query Frame = 1
Query:   19 RLDPTNAFDRALLAGARLTEAMRSAVERELGFTVSAGIASNKALAKLASSRNKPNKQTLVSAGASSEMLDSVPVRDLRGLGGKLGESVASWSGAETASELKRFTQAELVTNFGPKTGQWLWRICRGMDDEAVTPNLRPKSLSVCKSF---VLVHDRETVLMWMKLLTKELADRIVVDRKTWSRRATKLTVQI 585
            ++D T + D  L  GA + E MR+A+ER+ GF  SAGI+ NK LAKLA   NKPN+QTLVS G+  ++   +P+  +R LGGKLG SV    G E   EL +FT+++L ++FG K+G WL+ +CRG++ + V P   PK++   K+F     +  RE V  W+  L +EL +R+  DR    R AT+L V I
Sbjct:  179 QIDNTTSPDLQLTVGAVIVEEMRAAIERQTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSHMPIGKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKSGSWLYAMCRGIEHDPVKPRQIPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLAVSI 370          
BLAST of mRNA_H-elongata_contig16783.4232.1 vs. uniprot
Match: A0A0U9HQB4_KLENI (Putative Y-family DNA polymerase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HQB4_KLENI)

HSP 1 Score: 149 bits (376), Expect = 8.800e-35
Identity = 83/180 (46.11%), Postives = 112/180 (62.22%), Query Frame = 1
Query:   22 LDPTNAFDRALLAGARLTEAMRSAVERELGFTVSAGIASNKALAKLASSRNKPNKQTLVSAGASSEMLDSVPVRDLRGLGGKLGESVASWSGAETASELKRFTQAELVTNFGPKTGQWLWRICRGMDDEAVTPNLRPKSLSVCKSFVLVHDRETVLMWMKLLTKELADRIVVDRKTWSRR 561
            LDP+N +DR LLAGA +   MR AV  ELG+T SAGIA NK LAKLAS+ NKP KQT+V+  A   ++   P+R +R LGGK+G+ +    G ETA ++++  +A L+   G K G W++R  RG+ DE V      KS+   KS+ L +  E V  W++LL+ ELA RI  D K   RR
Sbjct:  173 LDPSNEYDRRLLAGATIVAQMREAVFHELGYTCSAGIAPNKLLAKLASAMNKPYKQTVVTPRAIPGLMKDFPMRKIRNLGGKMGKELCDTLGCETAGDVQKIPEAVLIEKLGDKMGPWVFRAVRGIHDEPVQTRQISKSMLAAKSYSLTNSIEDVRHWLRLLSMELAARIEYDVKLNKRR 352          
BLAST of mRNA_H-elongata_contig16783.4232.1 vs. uniprot
Match: A0A8B7RCA4_HIPAR (DNA polymerase eta isoform X2 n=2 Tax=Microchiroptera TaxID=30560 RepID=A0A8B7RCA4_HIPAR)

HSP 1 Score: 146 bits (368), Expect = 2.190e-34
Identity = 80/184 (43.48%), Postives = 115/184 (62.50%), Query Frame = 1
Query:   43 DRALLAGARLTEAMRSAVERELGFTVSAGIASNKALAKLASSRNKPNKQTLVSAGASSEMLDSVPVRDLRGLGGKLGESVASWSGAETASELKRFTQAELVTNFGPKTGQWLWRICRGMDDEAVTPNLRPKSLSVCKSF---VLVHDRETVLMWMKLLTKELADRIVVDRKTWSRRATKLTVQI 585
            D  L  GA + E MR+A+ER+ GF  SAGI+ NK LAKLA   NKPN+QTLVS G+  ++   +P+  +R LGGKLG SV    G E   EL +FT+++L ++FG K+G WL+ +CRG++ + V P   PK++   K+F     +   + V  W+  L +EL +R++ DR    R AT+LTV I
Sbjct:   63 DLQLTVGAVIVEEMRAAIERQTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSHMPIGKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKSGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATPDQVQWWLWQLAQELEERLIKDRNDNDRVATQLTVSI 246          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16783.4232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVN3_ECTSI2.170e-14955.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0G4ETT1_VITBC2.320e-4339.49UmuC domain-containing protein n=2 Tax=Vitrella br... [more]
A0A835YYX1_9STRA9.580e-4242.86UmuC domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2SV00_9STRA5.610e-4030.30Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J4GB80_9CHLO9.480e-3738.15UmuC domain-containing protein n=1 Tax=Volvox reti... [more]
A0A8J4B683_9CHLO3.800e-3637.78UmuC domain-containing protein n=1 Tax=Volvox afri... [more]
A0A8C4NJT5_DICLA1.490e-3542.42Polymerase (DNA directed), eta n=5 Tax=Moronidae T... [more]
A0A671E7H5_RHIFE1.910e-3543.23DNA polymerase eta n=4 Tax=Microchiroptera TaxID=3... [more]
A0A0U9HQB4_KLENI8.800e-3546.11Putative Y-family DNA polymerase n=1 Tax=Klebsormi... [more]
A0A8B7RCA4_HIPAR2.190e-3443.48DNA polymerase eta isoform X2 n=2 Tax=Microchiropt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16783contigH-elongata_contig16783:3841..7267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score410.6
Seed ortholog evalue9.3e-112
Seed eggNOG ortholog2880.D7FVN3
Preferred nameeso1
KEGG koko:K03509,ko:K03510
KEGG Pathwayko01524,ko03460,map01524,map03460
GOsGO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000731,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0008080,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0022402,GO:0031974,GO:0031981,GO:0033554,GO:0034061,GO:0034085,GO:0034086,GO:0034087,GO:0034088,GO:0034641,GO:0034645,GO:0034654,GO:0035861,GO:0042276,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0048285,GO:0050896,GO:0051276,GO:0051716,GO:0052858,GO:0070013,GO:0070601,GO:0070987,GO:0071704,GO:0071840,GO:0071897,GO:0071960,GO:0071962,GO:0090304,GO:0090734,GO:0098813,GO:0140014,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1903047
EggNOG free text desc.DNA synthesis involved in DNA repair
EggNOG OGsCOG0389@1,KOG2095@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDNA polymerase, Y-family, little finger domain
Ec32 orthologEc-01_006080.1
Exons6
Model size1468
Cds size1332
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16783.4232.1prot_H-elongata_contig16783.4232.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16783 3896..7186 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929980.814848-UTR-H-elongata_contig16783:3840..38951622929980.814848-UTR-H-elongata_contig16783:3840..3895Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16783 3841..3895 -
1691679233.3030996-UTR-H-elongata_contig16783:3840..38951691679233.3030996-UTR-H-elongata_contig16783:3840..3895Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16783 3841..3895 -
1622929980.921571-UTR-H-elongata_contig16783:7186..72671622929980.921571-UTR-H-elongata_contig16783:7186..7267Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16783 7187..7267 -
1691679233.3817549-UTR-H-elongata_contig16783:7186..72671691679233.3817549-UTR-H-elongata_contig16783:7186..7267Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16783 7187..7267 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929980.8346984-CDS-H-elongata_contig16783:3895..46141622929980.8346984-CDS-H-elongata_contig16783:3895..4614Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16783 3896..4614 -
1691679233.3151736-CDS-H-elongata_contig16783:3895..46141691679233.3151736-CDS-H-elongata_contig16783:3895..4614Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16783 3896..4614 -
1622929980.8487525-CDS-H-elongata_contig16783:5196..52821622929980.8487525-CDS-H-elongata_contig16783:5196..5282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16783 5197..5282 -
1691679233.325091-CDS-H-elongata_contig16783:5196..52821691679233.325091-CDS-H-elongata_contig16783:5196..5282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16783 5197..5282 -
1622929980.8641863-CDS-H-elongata_contig16783:5496..56431622929980.8641863-CDS-H-elongata_contig16783:5496..5643Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16783 5497..5643 -
1691679233.3344524-CDS-H-elongata_contig16783:5496..56431691679233.3344524-CDS-H-elongata_contig16783:5496..5643Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16783 5497..5643 -
1622929980.8788588-CDS-H-elongata_contig16783:5933..60731622929980.8788588-CDS-H-elongata_contig16783:5933..6073Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16783 5934..6073 -
1691679233.3513286-CDS-H-elongata_contig16783:5933..60731691679233.3513286-CDS-H-elongata_contig16783:5933..6073Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16783 5934..6073 -
1622929980.8931568-CDS-H-elongata_contig16783:6603..67351622929980.8931568-CDS-H-elongata_contig16783:6603..6735Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16783 6604..6735 -
1691679233.3600943-CDS-H-elongata_contig16783:6603..67351691679233.3600943-CDS-H-elongata_contig16783:6603..6735Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16783 6604..6735 -
1622929980.9068558-CDS-H-elongata_contig16783:7078..71861622929980.9068558-CDS-H-elongata_contig16783:7078..7186Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16783 7079..7186 -
1691679233.370103-CDS-H-elongata_contig16783:7078..71861691679233.370103-CDS-H-elongata_contig16783:7078..7186Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16783 7079..7186 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16783.4232.1

>prot_H-elongata_contig16783.4232.1 ID=prot_H-elongata_contig16783.4232.1|Name=mRNA_H-elongata_contig16783.4232.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=444bp
MRSAVERELGFTVSAGIASNKALAKLASSRNKPNKQTLVSAGASSEMLDS
VPVRDLRGLGGKLGESVASWSGAETASELKRFTQAELVTNFGPKTGQWLW
RICRGMDDEAVTPNLRPKSLSVCKSFVLVHDRETVLMWMKLLTKELADRI
VVDRKTWSRRATKLTVQIISLRAAISTIQTSSTAVKGDSSKSTSLTRSRT
VDIPGGGEPPTAESLVSEAMSVFEKTENALPCSRLALTAHDFVGLVSGRG
SIASFMRSPSPKPTSRPTRDNLISKPACARSAVSDEGKSAGLLPQASKDV
GNRVECDGNGANGGDALSPEGAGSRGGDGGGSEISSKNYTGRLNPSPEPG
DERCPNCGDAIASKKFLEHLDFHFAQGLQERYTREVDVAADIAARASGSG
AAKRRSAEGDERGPTRRPKAKQPVRRGSNGGTTARIDSFFKPA*
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mRNA from alignment at H-elongata_contig16783:3841..7267-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16783.4232.1 ID=mRNA_H-elongata_contig16783.4232.1|Name=mRNA_H-elongata_contig16783.4232.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3427bp|location=Sequence derived from alignment at H-elongata_contig16783:3841..7267- (Himanthalia elongata Himel1 dioecious)
CAGGGTGTCGCTGGACACCGCCTCGACCCAACAAATGCGTTCGACCGAGC TCTTTTGGCGGGAGCCCGCCTGACGGAAGCGATGCGGTCGGCGGTAGAGC GGGAGCTAGGGTTCACGGTATCTGCCGGAATCGCGTCCAACAAGGCTTTA GCAAAGCTGGCATCAAGCAGAAATAAACCCAACAAGCAGGTGCTGGATAA CGCGAGCTCGAGCAAGGGGTTCATACACGCGAGCGATTCCCTGAGGGCTG CACTTAAGCGTAGTTCTCCCTCCCCCCCCTCCCCCTCCCCCTCCCTCAAG CTATATCAGAGTTCGTAAGGATGTCACGTCAACGTAGCGTTCAAACGAAG CAATGTGGCGTCTCGCCGACTGAGTTGCTGTCGAGATCTGGGAGCATCTT CGCCAATTTGTTTCAAACCAGAGGACAGCAGCCTCTTCTGTGCCATCGAT GACATTGCCGTGGAACGATACCCTCTTCTGTTTCCCCCGTTGTTTCCCGT CAAACGTTTGGTTCGGCGCTGCCTGACCACAGACCTTGGTCTCCGCGGGA GCTTCTTCCGAGATGCTGGATTCGGTGCCAGTCCGAGACCTCCGCGGGCT CGGAGGAAAGCTCGGCGAGTCCGTGGCGTCTTGGAGCGGTGCAGAAACGG CTTCGGAGCTTAAGGTGAAGTTGAGATCGGGTAAAAGTACTGGAGAGGTC AAGGTTGGGCAACGGTGGAGGTTTCAAGATATCGAGTAATAATAGTAGAT ACTTAGGGTTGGGTTATATTTGAGGCCATCAAGGTCGGTTAAGTTTAGCA TTGAATGCCAAGCAGCTGACCGTTTGGCGCCTCATCGCTACTGGTGGCGA GGGAAACCTTGGCCCGAAGAAGCCCAGCCGCGATTGCTCGTTACTCGACA GTAGTTCGTTGGACTGAAAGACTTCTCCCGCTTTTGGCGATTGGTCAACC AAGAGCTTGAACTGCCCGTAGGTGGTCCTTTCCCGCTGCCGGTGAACCTT TCCGGGTGTAGCTCGTTCCGACTAGGGATCCACATAACCCTTGCCCAAGG CAACTCTTGTGTGTCGGAAGGGCGAAGGCTACCGTACTACACTCGCCAAA ATCATAATCCGCTTCACATTCTCACGTGGCGCTATGCCGCTATCCCCCCC CCCCCCTCCTTCGACACCGTATCGATACATTCTGAACCCGATAGCGTTTC ACACAGGCAGAGCTTGTGACTAATTTTGGCCCGAAGACGGGCCAGTGGCT GTGGAGAATCTGCCGTGGGATGGACGACGAGGCCGTGACTCCTAACCTCA GGCCTAAAAGTCTTAGCGTGTGCAAGTCTTTCGTGTGAGCTTGCCGAAAG ACGCTAGGAGGGGGATGTGTTTTTTTCTCGGATGCCGGCAGCTCTTCAGC TGTTGGAAGCCGATCGAGCACCATACTGGAATCAGATCCTTGATTGCGAC GAAGCTCTCGACCTCGCCGAGCGTATTGAGAGCCTTTAGCCGATTCCGCT TGTTCCGTACAGTCCCGCGTGCGAATTCCGATCTGCCAGAAGATAAGGGG ATTCGGATAAAGCTCGCTTTTAGCGCCTCTAATAGTTAGCCTTCGTTCCT TACTCATGGTGTAACGCTTGACAGTCTTGTTCATGATCGGGAGACTGTGT TGATGTGGATGAAGCTCCTGACGAAGGAGCTAGCCGACCGCATCGTCGTC GACAGAAAAACTTGGAGCCGGAGGGCGACAAAGCTCACCGTGCAGATTAT CTCGCTCCGAGCCGCCATCAGGTGCCCCGTGGCCGAAAATAGTAGTGGGA CGGTTTAAAGGATTCTGCGTTTCTTCTAACGGTACAAAATGGAAATACAA AGTACCAGGAGTGTATGATTTTGATCCGGGGGCGCCAGCGCTGGCATGCT ACACGCGGGACGGCCCTTGAGAGCATCAAGGGGTGATCCTATGCTCGCTT TGCGCACTGTCCCGTTCGTCGCCCTCCCTCGCCAGCACGATCCAGACGAG CTCTACCGCCGTAAAGGGGGACAGCTCCAAAAGCACCAGCCTGACGAGGT CGCGAACCGTGGACATTCCAGGTAAGATTTTCTCTCTGTAGTCTCGCTCG CCGACCCCACCAAGAGGCATTCGATCCCTCCATTCCCCATCCCCGGTACA GTGTCAACATGCCTTTATCTCTCATCAAAACACGCATGCGCGGAATCGCA AAGGGAGTACGGTACTAAATAGGATCGCGAGATAATTGTACACATTCGAA CCTGACGATAGTTGGTGCCCTGGAGTGCACCTCTCATGGTGCTAAGGAGG CTTGGATGTTCGGAGGGTTTGAATTGAGTTCATATGTTTTAGATTGAAAA ATTCTAGATGGTGCCCTATGCGCGCGAGAAAAAATGACCGCGGCGAATGG GACTCCATCTGTACACCGCCATCCCGAGTTTGTTATCAAGAGGAGCGCCG CTTGCTTCCGTAGCTCTTGCAACCAAAGTGCGCGATTTTTTGGCGCAGAT GCGGTATGGTCCCAAGCGCGAGTTGCCAGCCCAGCCTTTGTAGTTACTGC CGAGAACATTGTGCCGCTCTTCCACGATGGTCGGCAGCAACACGACATCC CCCGAACCGTCCTCGTCCATAACGATTTCGCCGCCTTCGTTCTTATCGTT CAGGGGGGGGCGAACCTCCAACCGCGGAGTCCCTGGTATCGGAGGCGATG TCCGTTTTCGAGAAGACAGAGAATGCTCTGCCGTGCAGTCGCCTGGCTCT CACGGCGCATGACTTCGTCGGTTTGGTTTCGGGACGCGGATCCATCGCCT CGTTCATGCGCTCACCCTCGCCGAAGCCTACCTCACGGCCGACTAGGGAT AATCTCATCAGCAAACCGGCCTGCGCGCGGTCGGCCGTATCGGATGAGGG CAAGAGCGCGGGATTGTTGCCTCAAGCGAGTAAAGATGTAGGAAATCGCG TTGAGTGTGACGGCAATGGCGCGAATGGAGGCGACGCGCTTTCACCGGAG GGCGCTGGGAGCAGGGGCGGCGACGGCGGCGGCAGTGAAATCTCGAGCAA AAATTATACCGGGCGATTGAACCCATCGCCCGAGCCCGGCGATGAACGTT GCCCCAACTGCGGGGACGCCATCGCGTCGAAGAAATTCTTAGAACACCTC GATTTTCACTTCGCCCAGGGTCTGCAGGAGAGGTACACGCGTGAGGTTGA CGTTGCGGCTGACATCGCAGCTAGGGCATCGGGAAGCGGGGCCGCGAAGC GTAGATCCGCAGAAGGAGATGAAAGAGGGCCGACGCGCCGGCCAAAGGCA AAGCAGCCCGTACGCCGTGGTTCGAATGGTGGTACTACGGCACGCATAGA TTCGTTCTTCAAACCGGCGTGATGATAACTCTTGGGCCTTTTGCTCTTTA ATCTCCACCCTGATCCAAGGTTCCGGG
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Coding sequence (CDS) from alignment at H-elongata_contig16783:3841..7267-

>mRNA_H-elongata_contig16783.4232.1 ID=mRNA_H-elongata_contig16783.4232.1|Name=mRNA_H-elongata_contig16783.4232.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2664bp|location=Sequence derived from alignment at H-elongata_contig16783:3841..7267- (Himanthalia elongata Himel1 dioecious)
ATGCGGTCGGCGGTAGAGCGGGAGCTAGGGTTCACGGTATCTGCCGGAAT
CGCGTCCAACAAGGCTTTAGCAAAGCTGGCATCAAGCAGAAATAAACCCA
ACAAGCAGATGCGGTCGGCGGTAGAGCGGGAGCTAGGGTTCACGGTATCT
GCCGGAATCGCGTCCAACAAGGCTTTAGCAAAGCTGGCATCAAGCAGAAA
TAAACCCAACAAGCAGACCTTGGTCTCCGCGGGAGCTTCTTCCGAGATGC
TGGATTCGGTGCCAGTCCGAGACCTCCGCGGGCTCGGAGGAAAGCTCGGC
GAGTCCGTGGCGTCTTGGAGCGGTGCAGAAACGGCTTCGGAGCTTAAGAC
CTTGGTCTCCGCGGGAGCTTCTTCCGAGATGCTGGATTCGGTGCCAGTCC
GAGACCTCCGCGGGCTCGGAGGAAAGCTCGGCGAGTCCGTGGCGTCTTGG
AGCGGTGCAGAAACGGCTTCGGAGCTTAAGCGTTTCACACAGGCAGAGCT
TGTGACTAATTTTGGCCCGAAGACGGGCCAGTGGCTGTGGAGAATCTGCC
GTGGGATGGACGACGAGGCCGTGACTCCTAACCTCAGGCCTAAAAGTCTT
AGCGTGTGCAAGTCTTTCGTCGTTTCACACAGGCAGAGCTTGTGACTAAT
TTTGGCCCGAAGACGGGCCAGTGGCTGTGGAGAATCTGCCGTGGGATGGA
CGACGAGGCCGTGACTCCTAACCTCAGGCCTAAAAGTCTTAGCGTGTGCA
AGTCTTTCGTTCTTGTTCATGATCGGGAGACTGTGTTGATGTGGATGAAG
CTCCTGACGAAGGAGCTAGCCGACCGCATCGTCGTCGACAGAAAAACTTG
GAGCCGGAGGGCGACAAAGCTCACCGTGCAGATTATCTCGCTCCGAGCCG
CCATCAGTCTTGTTCATGATCGGGAGACTGTGTTGATGTGGATGAAGCTC
CTGACGAAGGAGCTAGCCGACCGCATCGTCGTCGACAGAAAAACTTGGAG
CCGGAGGGCGACAAAGCTCACCGTGCAGATTATCTCGCTCCGAGCCGCCA
TCAGCACGATCCAGACGAGCTCTACCGCCGTAAAGGGGGACAGCTCCAAA
AGCACCAGCCTGACGAGGTCGCGAACCGTGGACATTCCAGCACGATCCAG
ACGAGCTCTACCGCCGTAAAGGGGGACAGCTCCAAAAGCACCAGCCTGAC
GAGGTCGCGAACCGTGGACATTCCAGGGGGGGGCGAACCTCCAACCGCGG
AGTCCCTGGTATCGGAGGCGATGTCCGTTTTCGAGAAGACAGAGAATGCT
CTGCCGTGCAGTCGCCTGGCTCTCACGGCGCATGACTTCGTCGGTTTGGT
TTCGGGACGCGGATCCATCGCCTCGTTCATGCGCTCACCCTCGCCGAAGC
CTACCTCACGGCCGACTAGGGATAATCTCATCAGCAAACCGGCCTGCGCG
CGGTCGGCCGTATCGGATGAGGGCAAGAGCGCGGGATTGTTGCCTCAAGC
GAGTAAAGATGTAGGAAATCGCGTTGAGTGTGACGGCAATGGCGCGAATG
GAGGCGACGCGCTTTCACCGGAGGGCGCTGGGAGCAGGGGCGGCGACGGC
GGCGGCAGTGAAATCTCGAGCAAAAATTATACCGGGCGATTGAACCCATC
GCCCGAGCCCGGCGATGAACGTTGCCCCAACTGCGGGGACGCCATCGCGT
CGAAGAAATTCTTAGAACACCTCGATTTTCACTTCGCCCAGGGTCTGCAG
GAGAGGTACACGCGTGAGGTTGACGTTGCGGCTGACATCGCAGCTAGGGC
ATCGGGAAGCGGGGCCGCGAAGCGTAGATCCGCAGAAGGAGATGAAAGAG
GGCCGACGCGCCGGCCAAAGGCAAAGCAGCCCGTACGCCGTGGTTCGAAT
GGTGGTACTACGGCACGCATAGATTCGTTCTTCAAACCGGCGTGAGGGGG
GGCGAACCTCCAACCGCGGAGTCCCTGGTATCGGAGGCGATGTCCGTTTT
CGAGAAGACAGAGAATGCTCTGCCGTGCAGTCGCCTGGCTCTCACGGCGC
ATGACTTCGTCGGTTTGGTTTCGGGACGCGGATCCATCGCCTCGTTCATG
CGCTCACCCTCGCCGAAGCCTACCTCACGGCCGACTAGGGATAATCTCAT
CAGCAAACCGGCCTGCGCGCGGTCGGCCGTATCGGATGAGGGCAAGAGCG
CGGGATTGTTGCCTCAAGCGAGTAAAGATGTAGGAAATCGCGTTGAGTGT
GACGGCAATGGCGCGAATGGAGGCGACGCGCTTTCACCGGAGGGCGCTGG
GAGCAGGGGCGGCGACGGCGGCGGCAGTGAAATCTCGAGCAAAAATTATA
CCGGGCGATTGAACCCATCGCCCGAGCCCGGCGATGAACGTTGCCCCAAC
TGCGGGGACGCCATCGCGTCGAAGAAATTCTTAGAACACCTCGATTTTCA
CTTCGCCCAGGGTCTGCAGGAGAGGTACACGCGTGAGGTTGACGTTGCGG
CTGACATCGCAGCTAGGGCATCGGGAAGCGGGGCCGCGAAGCGTAGATCC
GCAGAAGGAGATGAAAGAGGGCCGACGCGCCGGCCAAAGGCAAAGCAGCC
CGTACGCCGTGGTTCGAATGGTGGTACTACGGCACGCATAGATTCGTTCT
TCAAACCGGCGTGA
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