mRNA_H-elongata_contig16767.4225.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16767.4225.1
Unique NamemRNA_H-elongata_contig16767.4225.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig16767.4225.1 vs. uniprot
Match: D7FRV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV9_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 2.450e-53
Identity = 95/203 (46.80%), Postives = 135/203 (66.50%), Query Frame = 3
Query:  168 GTLAMHIRSGDIFKSSHNNPKIQRSGQPPLQFFLKAIASRQWSEVTIVTYSPKERWLNPTYTALEALNQKGKLGPNVNMFKNRTLHDDVRSMLCADALALSRSSLHFMTTAFTRASTFFIPSECGPGKYNRASKRLQEHP-KVLVENTTLLLLEKP*EAEVYGIEWQLGPESYSPYTCWNNTQTQVLEMINYGGLE-LKKCCI 770
            G+L +HIRSGDIF  +    +    GQPPLQ++L  +  + W  VT +T +  ++ +NPT++ LE + + G LG NV + KNR+L +DVR MLCADALA SRSS+ F+T A +RA+TFF+P+ CG G +    +R++  P K   +NTTLLLLEKP +AEVYG  W      YS Y  W++T  Q+LEM  +GG+E ++KC +
Sbjct:  251 GSLVVHIRSGDIFNPNEEGRRRTEFGQPPLQYYLHVLGEKDWDNVTFLTAAWNQKAINPTFSILEVMAKAGTLGDNVRLLKNRSLLEDVREMLCADALATSRSSMSFLTFAHSRATTFFVPTPCGNGGF----RRMRRPPVKATFDNTTLLLLEKP-DAEVYGTAWPGNSPKYSVYQAWHDTPEQLLEMATFGGIEGVQKCSV 448          
BLAST of mRNA_H-elongata_contig16767.4225.1 vs. uniprot
Match: D7FRV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV8_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 7.940e-53
Identity = 95/203 (46.80%), Postives = 137/203 (67.49%), Query Frame = 3
Query:  168 GTLAMHIRSGDIFKSSHNNPKIQRSGQPPLQFFLKAIASRQWSEVTIVTYSPKERWLNPTYTALEALNQKGKLGPNVNMFKNRTLHDDVRSMLCADALALSRSSLHFMTTAFTRASTFFIPSECGPGKYNRASKRLQEHP-KVLVENTTLLLLEKP*EAEVYGIEWQLGPESYSPYTCWNNTQTQVLEMINYGGLE-LKKCCI 770
            G+L  HIRSGDIF       + Q  GQPPLQ++L+ +A++ W  VT +T + ++R LNPT+  LE +   G LG NV++F NRTL  D++ MLCADALA SRSS+ F+T A +RA+TFF+P+ CG G +    +R+++ P K   +NTTLLLLEK  E+EV+G++W+     YS Y  W ++  Q+LEM  Y G++ L+KC +
Sbjct:  115 GSLVAHIRSGDIFNPDGEGHRRQGFGQPPLQYYLRVLAAKDWDNVTFLTAAWEDRALNPTFLTLEMMADAGVLGENVHLFNNRTLLTDMKEMLCADALATSRSSMSFLTFAHSRATTFFVPTPCGNGGF----RRMKDVPVKATFDNTTLLLLEKR-ESEVFGVDWRQNGSDYSVYKNWLDSPHQLLEMTTYKGIKGLQKCTV 312          
BLAST of mRNA_H-elongata_contig16767.4225.1 vs. uniprot
Match: A0A6H5L0Z0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z0_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 4.910e-34
Identity = 77/204 (37.75%), Postives = 118/204 (57.84%), Query Frame = 3
Query:  162 KGGTLAMHIRSGDIFKSSHNNPKIQRSGQPPLQFFLKAIASRQWSEVTIVTYSPKERWLNPTYTALEALNQKGKLGPNVNMFKNRTLHDDVRSMLCADALALSRSSLHFMTTAFTRASTFFIPSECGPGKYNRASKRLQEHPKVLVENTTLLLLEKP*EAEVYGIEWQLGPESYSPYTCWNNTQTQVLEMINYGGLE-LKKCCI 770
            KG +L +H+RSGDIF    ++  I   GQPPLQF+LK I SR WS ++++T +  +R  NPT+  L+ L+++G LG   N + +R L+ D+R MLCA+ + L++SS+  +    +RA  FF+P+ C  G                V+    + L +P + EVYGIEW+     YS Y  W NT  Q LEMI    ++ +++CC+
Sbjct:  235 KGQSLVVHMRSGDIFSPELSD--IPWYGQPPLQFYLKVIGSRPWSNISVLTNARIQREFNPTFGVLQELDKQGLLGAPANFYADRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARGG------------PFFVDR---ICLYRP-DVEVYGIEWKTTLNEYSVYDEWINTDAQRLEMITSDEVKSIQRCCV 420          
BLAST of mRNA_H-elongata_contig16767.4225.1 vs. uniprot
Match: D7FHC1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHC1_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 1.070e-32
Identity = 72/200 (36.00%), Postives = 118/200 (59.00%), Query Frame = 3
Query:  168 GTLAMHIRSGDIFKSSHNNPKIQRSGQPPLQFFLKAIASRQWSEVTIVTYSPKERWLNPTYTALEALNQKGKLGPNVNMFKNRTLHDDVRSMLCADALALSRSSLHFMTTAFTRASTFFIPSECGPGKYNRASKRLQEHPKVLVENTTLLLLEKP*EAEVYGIEWQLGPESYSPYTCWNNTQTQVLEMINYGGLELKKCC 767
            G L +HIRS DIF     + +  + GQPPL +FL  IAS++W  ++++T  P ++ LNPTY+ +  LN++G LG NV M K+R+   D+++MLCAD LALS S+L  +  A +RA  FF+P  C P  +     R          N +++ L++P E +VYGI+W+   ++Y+ Y  W+     +  +++     +++CC
Sbjct:  373 GHLVVHIRSQDIFSP---DTRFHQYGQPPLGYFLAVIASKKWDYLSVLTSGP-DKQLNPTYSVIAELNRQGYLGTNVGMHKDRSFWVDLQTMLCADNLALSHSTLSNLLLAHSRAKRFFLPWGCEPQPWTLKLNRFV--------NASMICLQRP-EVQVYGIDWRTTKDAYTVYDSWDPNSNMMEMVVSDAVKGVQRCC 559          
BLAST of mRNA_H-elongata_contig16767.4225.1 vs. uniprot
Match: D8LSV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSV7_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 6.680e-29
Identity = 64/176 (36.36%), Postives = 101/176 (57.39%), Query Frame = 3
Query:  246 QPPLQFFLKAIASRQWSEVTIVTYSPKERWLNPTYTALEALNQKGKLGPNVNMFKNRTLHDDVRSMLCADALALSRSSLHFMTTAFTRASTFFIPSECGPGKYNRASKRLQEHPKVLVENTTLLLLEKP*EAEVYGIEWQLGPESYSPYTCWNNTQTQVLEMINYGGLE-LKKCCI 770
            +PPLQF+LK I SR WS ++++T +  +R  NPT+  L+ L+++G LG   N + +R L+ D+R MLCA+ + L++SS+  +    +RA  FF+P+ C  G                V+    + L +P + EVYGIEW+     YS Y  W NT  Q LEMI    ++ +++CC+
Sbjct:   39 KPPLQFYLKVIGSRPWSNISVLTNARIQREFNPTFGVLQELDKQGLLGAPANFYPDRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARGG------------PFFVDR---ICLYRP-DVEVYGIEWKTTLNEYSVYDEWINTDAQRLEMITSDEVKSIQRCCV 198          
BLAST of mRNA_H-elongata_contig16767.4225.1 vs. uniprot
Match: A0A6H5K7B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B3_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.420e-22
Identity = 66/200 (33.00%), Postives = 101/200 (50.50%), Query Frame = 3
Query:  168 GTLAMHIRSGDIFKSSHNNPKIQRSGQPPLQFFLKAIASRQWSEVTIVTYS--PKERWLNPTYTALEALNQKGKLGPNVNMFKNRTLHDDVRSMLCADALALSRSSLHFMTTAFTRASTFFIPSECGPGKYNRASKRLQEHPKVLVENTTLLLLEKP*EAEVYGI-EWQLGPESYSPYTCWNNTQTQVLEMINY--GGLE 752
            G L +H+RSGDIF   H +      GQPPLQ++++AI  ++W  V +VT     +   +NP   ALEA   +G+L  N++  KNRT+ +D+R M+CAD    +RS+L  + +  + A   + P  C                    E    L  E+P   +V+G+  W    + Y+ Y  WNNT  Q+ EM+ +  GG E
Sbjct:  365 GNLVVHVRSGDIFVRPHPD-----YGQPPLQYYVRAIQDQEWDRVDVVTDGIVDETHAINPVVPALEAKVAEGELAGNIHFHKNRTIGEDLRYMICADGFVAARSTLRHVVSHHSSAKRMYFPMACN-------------------EKLKTLSTERP-GTQVFGMASWN---DQYTVYQRWNNTADQLTEMMTFDVGGFE 536          
BLAST of mRNA_H-elongata_contig16767.4225.1 vs. uniprot
Match: D7G2M2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2M2_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 9.070e-21
Identity = 73/220 (33.18%), Postives = 109/220 (49.55%), Query Frame = 3
Query:  123 KNILEGNTTGDTIKGGTLAMHIRSGDIFKSSHNNPKIQRSGQPPLQFFLKAIASRQWSEVTIVTY--SPKERWLNPTYTALEALNQKGKLGPNVNMFKNRTLHDDVRSMLCADA-LALSRSSLHFMTTAFTRASTFFIPSECGPGK--YNRASKRLQEHPKVLVENTTLLLLEKP*EA-EVYGIEWQLGPESYSPYTCWNNTQTQVLEMINYGGLELKKC 764
            K  L G+   +     TL +H+RSGDIF     +P     GQPPLQ++++AI  ++W  V IVT   + K   +NP   ALE +  +G+L  N+   K+RT+ +D  SM+C    L  +RSSL  +    + AS  + P  C      Y R S            + +L  L+   +A +VYG++   G E YS    WNNT  QV EM+ +     ++C
Sbjct:  302 KKNLVGSEEEEGRPANTLVIHVRSGDIFV----DPAAPGYGQPPLQYYVRAIKHQKWDRVDIVTNGRTKKMNVMNPVIPALEVMFAEGELTGNIYFHKDRTMEEDFLSMMCVGGGLVTARSSLSLLLAHHSSASRLYFPRPCAGSLEFYTRGSP-----------DASLNDLDDELQAVKVYGVK-PPGMERYSLDVSWNNTADQVNEMLTFNVSSFEQC 505          
BLAST of mRNA_H-elongata_contig16767.4225.1 vs. uniprot
Match: D7G610_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G610_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 5.970e-19
Identity = 65/201 (32.34%), Postives = 92/201 (45.77%), Query Frame = 3
Query:  168 GTLAMHIRSGDIFKSSHNNPKIQRSGQPPLQFFLKAIASRQWSEVTIVTYSPKERWLNPTYTALEALNQKGKLGPNVNMFKNRTLHDDVRSMLCADALALSRSSLHFMTTAFTRASTFFIPSECGPGKYNRASKRLQEHPKVLVENTTLLLLEKP*EAEVYGIEWQLGPESYSPYTCWNNTQTQVLEMINYGGLELKKCCI 770
            G L +H+RSGDIF        +   GQPPLQF+L  +  + W  + +VT       +NP   AL A+   G L  NV     R++ +D++SMLCAD+L L++SSL    +  + A+  + P  C       A  R    PK                 +VYG++      SYS Y  W NT  Q  EM+ Y      + CI
Sbjct:  230 GNLVLHVRSGDIFFDR----VVPYKGQPPLQFYLLLMQDQPWDRIDVVTNGQNWDNVNPVVPALMAMRATGALPDNVYFHTERSMGEDLQSMLCADSLGLAKSSLVNFLSYHSTANRVYYPWRCNHDLRELARLR----PKT----------------KVYGLQLDRSG-SYSVYRHWENTPEQRAEMLGYNVTTTFQRCI 405          
BLAST of mRNA_H-elongata_contig16767.4225.1 vs. uniprot
Match: D7G1L4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L4_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 1.360e-17
Identity = 66/200 (33.00%), Postives = 96/200 (48.00%), Query Frame = 3
Query:  168 GTLAMHIRSGDIFKSSHNNPKIQRSGQPPLQFFLKAIASRQWSEVTIVT--YSPKERWLNPTYTALEALNQKGKLGPNVNMFKNRTLHDDVRSMLCADALALSRSSLHFMTTAFTRASTFFIPSECGPGKYNRASKRLQEHPKVLVENTTLLLLEKP*EAEVYGI-EWQLGPESYSPYTCWNNTQTQVLEMI--NYGGLE 752
            G L MH+RSGDIF S    P     GQ    ++++AI  +QW  V +VT     K   +NP   ALEA   KG+L  N++  KNRT+ +D+ SM+CAD    +RS+L  + +  + A   + P+ C                    E    L  E P   +V+G+  W      Y+ +  WNNT  Q+ EM+  + GG E
Sbjct:  363 GNLVMHVRSGDIFVS----PAHPGYGQ----YYVQAIQDQQWDRVDVVTNGIEDKNHAINPIVPALEAKVAKGQLPGNIHFHKNRTMEEDLLSMICADGFVAARSTLGRVVSHLSSAKRMYFPTSCN-------------------EELKNLGTEGP-GTQVFGMASWD---HEYTVFRRWNNTADQIAEMMTADVGGFE 531          
BLAST of mRNA_H-elongata_contig16767.4225.1 vs. uniprot
Match: A0A7S3AYY4_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AYY4_9EUKA)

HSP 1 Score: 68.6 bits (166), Expect = 2.300e-9
Identity = 66/222 (29.73%), Postives = 97/222 (43.69%), Query Frame = 3
Query:  153 DTIKGGTLAMHIRSGDIFKS--------SHN--NPKIQRSGQPPLQFFLKAIASR-----QWSEVTIVTYSPKERWLNPTYTALEALNQKGKLGPNVNMFKNRTLHDDVRSMLCADALALSRSSLH--FMTTAFTRASTFFIPSEC-----GPGKYNRASK----RLQEHPKVLVENTTLLLLEKP*EAEVYGIE-WQLGPE-SYSPYTCWNNTQTQVLEMI 734
            D  +  TL MHIRSGD+F          +H   N  +   GQPPL F+L+A+A       +   V  +  SP     NP    L+   Q   L   + +  + +L DD++ +LCA  L L+ SS+   FM     R  T+     C     G   Y   +     + +  P   V+N T            YG++ W + PE SYSP + WNN+  Q +EM+
Sbjct:   88 DLQQDSTLVMHIRSGDLFTDWKDGERIFTHKGYNSDMSHRGQPPLAFYLRAMAHALPAPPEPPGVVYLVTSPD--LANPVVKLLKHQAQLHALRYKLVVSASSSLQDDLKLLLCARNLVLAASSMGTLFMDGPRLR-KTYSFHHSCHKNTTGQSSYGNVALAPEGQCESAPAWCVQNATC--------TGAYGVQNWCVHPEQSYSPLSKWNNSDAQQVEML 298          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16767.4225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FRV9_ECTSI2.450e-5346.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRV8_ECTSI7.940e-5346.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0Z0_9PHAE4.910e-3437.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHC1_ECTSI1.070e-3236.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LSV7_ECTSI6.680e-2936.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7B3_9PHAE1.420e-2233.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2M2_ECTSI9.070e-2133.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G610_ECTSI5.970e-1932.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G1L4_ECTSI1.360e-1733.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3AYY4_9EUKA2.300e-929.73Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16767contigH-elongata_contig16767:1762..3845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1048
Cds size456
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929979.2159898-UTR-H-elongata_contig16767:1761..19401622929979.2159898-UTR-H-elongata_contig16767:1761..1940Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16767 1762..1940 +
1691679232.684199-UTR-H-elongata_contig16767:1761..19401691679232.684199-UTR-H-elongata_contig16767:1761..1940Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16767 1762..1940 +
1622929979.2780933-UTR-H-elongata_contig16767:3094..31031622929979.2780933-UTR-H-elongata_contig16767:3094..3103Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16767 3095..3103 +
1691679232.7516806-UTR-H-elongata_contig16767:3094..31031691679232.7516806-UTR-H-elongata_contig16767:3094..3103Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16767 3095..3103 +
1622929979.2880914-UTR-H-elongata_contig16767:3441..38451622929979.2880914-UTR-H-elongata_contig16767:3441..3845Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16767 3442..3845 +
1691679232.7641063-UTR-H-elongata_contig16767:3441..38451691679232.7641063-UTR-H-elongata_contig16767:3441..3845Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16767 3442..3845 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929979.2293978-CDS-H-elongata_contig16767:1940..20091622929979.2293978-CDS-H-elongata_contig16767:1940..2009Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16767 1941..2009 +
1691679232.6932464-CDS-H-elongata_contig16767:1940..20091691679232.6932464-CDS-H-elongata_contig16767:1940..2009Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16767 1941..2009 +
1622929979.2442365-CDS-H-elongata_contig16767:2299..24611622929979.2442365-CDS-H-elongata_contig16767:2299..2461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16767 2300..2461 +
1691679232.7093892-CDS-H-elongata_contig16767:2299..24611691679232.7093892-CDS-H-elongata_contig16767:2299..2461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16767 2300..2461 +
1622929979.254589-CDS-H-elongata_contig16767:2694..27401622929979.254589-CDS-H-elongata_contig16767:2694..2740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16767 2695..2740 +
1691679232.7224996-CDS-H-elongata_contig16767:2694..27401691679232.7224996-CDS-H-elongata_contig16767:2694..2740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16767 2695..2740 +
1622929979.2648323-CDS-H-elongata_contig16767:2915..30941622929979.2648323-CDS-H-elongata_contig16767:2915..3094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16767 2916..3094 +
1691679232.732056-CDS-H-elongata_contig16767:2915..30941691679232.732056-CDS-H-elongata_contig16767:2915..3094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16767 2916..3094 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16767.4225.1prot_H-elongata_contig16767.4225.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16767 1941..3094 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16767.4225.1

>prot_H-elongata_contig16767.4225.1 ID=prot_H-elongata_contig16767.4225.1|Name=mRNA_H-elongata_contig16767.4225.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp
MHIRSGDIFKSSHNNPKIQRSGQPPLQFFLKAIASRQWSEVTIVTYSPKE
RWLNPTYTALEALNQKGKLGPNVNMFKNRTLHDDVRSMLCADALALSRSS
LHFMTTAFTRASTFFIPSECGPGKYNRASKRLQEHPKVLVENTTLLLLEK
P*
back to top

mRNA from alignment at H-elongata_contig16767:1762..3845+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16767.4225.1 ID=mRNA_H-elongata_contig16767.4225.1|Name=mRNA_H-elongata_contig16767.4225.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2084bp|location=Sequence derived from alignment at H-elongata_contig16767:1762..3845+ (Himanthalia elongata Himel1 dioecious)
CGTACATCGGGCCACTCGCAAAACTGTCTGCGGCTTGCGAACAAAAGCCA CCCTTTACGCATCTCGCGCCGACTGGAGTTTCCACAACTCTCACATCAAA GGATGAGAGGACGACATACCAGAAAAATATATTGGAAGGGAACACGACGG GTGATACCATCAAGGGAGGGACCCTGGCCATGCACATTCGTTCGGGCGAT ATTTTCAAATCGAGCCATAATAACCCTAAAATACAGAGGAGCGGACAGGT TAGTTCAGAAATTCAATTGATCAATTGGTGTACGAATCGTTCAATTCATC ATGACGAGAGTAAGCAGAGTCTTTCGATATCTATCACGCAGTGGAATGTA TAGTGTGTGCCTCATCTTTGCATCAAGCCTTCGAAAACCAAGTCTTCATC GGTGAATTAAGTATAATTTGTTAGGGGAATTAATTGTGAACGAGACATTG TTTTCTTTATATAAGGCTTGCACCGTAATTCTTCGCATTCTTACATGACC ATCAAGACCGAACCTCTTTCCCTCGTTCCACCCCCCAGCCCCCGTTGCAG TTTTTTTTGAAAGCAATCGCAAGCCGACAATGGTCCGAAGTGACGATTGT TACCTATTCACCGAAGGAAAGGTGGCTTAACCCCACCTATACTGCCCTGG AGGCCTTGAATCAGAAGGGGAAATTGGGGCCAAACGTCAACATGTTCAAG GTACCGTTATAGGAAACACCAACTCGATACCACGAACTCTCTACTCCTCC TGCATATTTGAACCTCTATACATGAACGCACGTTCGCGGCTGGCTACTGG CATTCCCTTGAAAACCCCACCGGCCGGGTCTTCGAACGTATTCAACGTGT ACTAATAGCGTTTTCACTCCTCGATTCTGTTTCAAACGCCTTGCCGGCAT GTCGCTACGGGACGCGTTATCTCCAACTTGAAGAATCGGACCCTCCATGA CGATGTTCGGTCAATGTTGTGTGCGGATGGTAAGATCGACTTTCGTCTGG GTTAGGGTTAAGGTTAGGTATCTTGTGTAACAGTCTTATCATGGCTGGCT ATATTTTCGGTTTAGGTAAGTTAAATTATTCAAACGTTTGAATCGACCCA ACACATGATGAACATTTTCCCACCCTTTTGTTGTCTTCGATACGCGTTGC ACAGCTCTTGCTCTATCTCGATCGAGCCTTCACTTCATGACAACTGCCTT CACACGAGCCTCCACATTCTTTATACCTTCGGAGTGCGGCCCAGGGAAAT ACAACCGCGCGTCAAAGCGGCTCCAAGAGCACCCGAAGGTTCTCGTTGAA AACACTACACTTTTGCTCCTCGAAAAGCCGTAGGAAGCGGAGGTACGATC TGACGGTAGATGCTATAGAGCGAATAACATGTTCTATTAAATAGCCGAGA TACAAAGCCTAGACAACACTCTATGGAATGATTATGGTGGGAATCGCACC TATAATTTGGGGATGATAATGGAAATCGTATCAAATTTGCGCGTCATTCG ATAATGGTTATACTTAGATGGAATGAAGGAAATAACCTTTTAATAGACCA CCTCGACGTTCGAAGCTGCCAAGTATGTATGGATTTGAACGGTAAAAAAT GGGTGAAGCATGTTATCGCGTTTTGTTTACTGAAACCCAATGCATTGACC CCGTCTTGTTTATTTTCCCCAAAACGCCAGGTATACGGTATTGAATGGCA GCTTGGGCCGGAATCGTACAGTCCCTACACTTGTTGGAATAATACCCAGA CGCAAGTGCTTGAGATGATAAATTACGGCGGCCTAGAGTTGAAGAAGTGT TGCATCTGATTATTCATCCATCTGTGGGGCAGCCAGAAAGTGCGGTGCAT GTCGGTTACTGGTAAACTTCTCTTCTCGATTTATCTCTATTATTGTAGAA AATTGTTTTAGGACCCTTGGAGTAATCATATTCAGAGATTGTTGCGTAAA ACCTAGCAATTAATTTTATCCTACATACATTATTGATGGCTGTTGGGTAA ATGAGGCAGGGTCCGCATTTCATGATGCTCTAACATTATATTTGTAAAAC AATTAGCAAAAACCTACGGGAATTTTAGCTGGAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig16767:1762..3845+

>mRNA_H-elongata_contig16767.4225.1 ID=mRNA_H-elongata_contig16767.4225.1|Name=mRNA_H-elongata_contig16767.4225.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at H-elongata_contig16767:1762..3845+ (Himanthalia elongata Himel1 dioecious)
ATGCACATTCGTTCGGGCGATATTTTCAAATCGAGCCATAATAACCCTAA
AATACAGAGGAGCGGACAGATGCACATTCGTTCGGGCGATATTTTCAAAT
CGAGCCATAATAACCCTAAAATACAGAGGAGCGGACAGCCCCCGTTGCAG
TTTTTTTTGAAAGCAATCGCAAGCCGACAATGGTCCGAAGTGACGATTGT
TACCTATTCACCGAAGGAAAGGTGGCTTAACCCCACCTATACTGCCCTGG
AGGCCTTGAATCAGAAGGGGAAATTGGGGCCAAACGTCAACATGTTCAAG
CCCCCGTTGCAGTTTTTTTTGAAAGCAATCGCAAGCCGACAATGGTCCGA
AGTGACGATTGTTACCTATTCACCGAAGGAAAGGTGGCTTAACCCCACCT
ATACTGCCCTGGAGGCCTTGAATCAGAAGGGGAAATTGGGGCCAAACGTC
AACATGTTCAAGAATCGGACCCTCCATGACGATGTTCGGTCAATGTTGTG
TGCGGATGAATCGGACCCTCCATGACGATGTTCGGTCAATGTTGTGTGCG
GATGCTCTTGCTCTATCTCGATCGAGCCTTCACTTCATGACAACTGCCTT
CACACGAGCCTCCACATTCTTTATACCTTCGGAGTGCGGCCCAGGGAAAT
ACAACCGCGCGTCAAAGCGGCTCCAAGAGCACCCGAAGGTTCTCGTTGAA
AACACTACACTTTTGCTCCTCGAAAAGCCGTAGCTCTTGCTCTATCTCGA
TCGAGCCTTCACTTCATGACAACTGCCTTCACACGAGCCTCCACATTCTT
TATACCTTCGGAGTGCGGCCCAGGGAAATACAACCGCGCGTCAAAGCGGC
TCCAAGAGCACCCGAAGGTTCTCGTTGAAAACACTACACTTTTGCTCCTC
GAAAAGCCGTAG
back to top