mRNA_H-elongata_contig16767.4225.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig16767.4225.1 vs. uniprot
Match: D7FRV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV9_ECTSI) HSP 1 Score: 191 bits (485), Expect = 2.450e-53 Identity = 95/203 (46.80%), Postives = 135/203 (66.50%), Query Frame = 3
Query: 168 GTLAMHIRSGDIFKSSHNNPKIQRSGQPPLQFFLKAIASRQWSEVTIVTYSPKERWLNPTYTALEALNQKGKLGPNVNMFKNRTLHDDVRSMLCADALALSRSSLHFMTTAFTRASTFFIPSECGPGKYNRASKRLQEHP-KVLVENTTLLLLEKP*EAEVYGIEWQLGPESYSPYTCWNNTQTQVLEMINYGGLE-LKKCCI 770
G+L +HIRSGDIF + + GQPPLQ++L + + W VT +T + ++ +NPT++ LE + + G LG NV + KNR+L +DVR MLCADALA SRSS+ F+T A +RA+TFF+P+ CG G + +R++ P K +NTTLLLLEKP +AEVYG W YS Y W++T Q+LEM +GG+E ++KC +
Sbjct: 251 GSLVVHIRSGDIFNPNEEGRRRTEFGQPPLQYYLHVLGEKDWDNVTFLTAAWNQKAINPTFSILEVMAKAGTLGDNVRLLKNRSLLEDVREMLCADALATSRSSMSFLTFAHSRATTFFVPTPCGNGGF----RRMRRPPVKATFDNTTLLLLEKP-DAEVYGTAWPGNSPKYSVYQAWHDTPEQLLEMATFGGIEGVQKCSV 448
BLAST of mRNA_H-elongata_contig16767.4225.1 vs. uniprot
Match: D7FRV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV8_ECTSI) HSP 1 Score: 186 bits (473), Expect = 7.940e-53 Identity = 95/203 (46.80%), Postives = 137/203 (67.49%), Query Frame = 3
Query: 168 GTLAMHIRSGDIFKSSHNNPKIQRSGQPPLQFFLKAIASRQWSEVTIVTYSPKERWLNPTYTALEALNQKGKLGPNVNMFKNRTLHDDVRSMLCADALALSRSSLHFMTTAFTRASTFFIPSECGPGKYNRASKRLQEHP-KVLVENTTLLLLEKP*EAEVYGIEWQLGPESYSPYTCWNNTQTQVLEMINYGGLE-LKKCCI 770
G+L HIRSGDIF + Q GQPPLQ++L+ +A++ W VT +T + ++R LNPT+ LE + G LG NV++F NRTL D++ MLCADALA SRSS+ F+T A +RA+TFF+P+ CG G + +R+++ P K +NTTLLLLEK E+EV+G++W+ YS Y W ++ Q+LEM Y G++ L+KC +
Sbjct: 115 GSLVAHIRSGDIFNPDGEGHRRQGFGQPPLQYYLRVLAAKDWDNVTFLTAAWEDRALNPTFLTLEMMADAGVLGENVHLFNNRTLLTDMKEMLCADALATSRSSMSFLTFAHSRATTFFVPTPCGNGGF----RRMKDVPVKATFDNTTLLLLEKR-ESEVFGVDWRQNGSDYSVYKNWLDSPHQLLEMTTYKGIKGLQKCTV 312
BLAST of mRNA_H-elongata_contig16767.4225.1 vs. uniprot
Match: A0A6H5L0Z0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z0_9PHAE) HSP 1 Score: 139 bits (350), Expect = 4.910e-34 Identity = 77/204 (37.75%), Postives = 118/204 (57.84%), Query Frame = 3
Query: 162 KGGTLAMHIRSGDIFKSSHNNPKIQRSGQPPLQFFLKAIASRQWSEVTIVTYSPKERWLNPTYTALEALNQKGKLGPNVNMFKNRTLHDDVRSMLCADALALSRSSLHFMTTAFTRASTFFIPSECGPGKYNRASKRLQEHPKVLVENTTLLLLEKP*EAEVYGIEWQLGPESYSPYTCWNNTQTQVLEMINYGGLE-LKKCCI 770
KG +L +H+RSGDIF ++ I GQPPLQF+LK I SR WS ++++T + +R NPT+ L+ L+++G LG N + +R L+ D+R MLCA+ + L++SS+ + +RA FF+P+ C G V+ + L +P + EVYGIEW+ YS Y W NT Q LEMI ++ +++CC+
Sbjct: 235 KGQSLVVHMRSGDIFSPELSD--IPWYGQPPLQFYLKVIGSRPWSNISVLTNARIQREFNPTFGVLQELDKQGLLGAPANFYADRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARGG------------PFFVDR---ICLYRP-DVEVYGIEWKTTLNEYSVYDEWINTDAQRLEMITSDEVKSIQRCCV 420
BLAST of mRNA_H-elongata_contig16767.4225.1 vs. uniprot
Match: D7FHC1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHC1_ECTSI) HSP 1 Score: 137 bits (346), Expect = 1.070e-32 Identity = 72/200 (36.00%), Postives = 118/200 (59.00%), Query Frame = 3
Query: 168 GTLAMHIRSGDIFKSSHNNPKIQRSGQPPLQFFLKAIASRQWSEVTIVTYSPKERWLNPTYTALEALNQKGKLGPNVNMFKNRTLHDDVRSMLCADALALSRSSLHFMTTAFTRASTFFIPSECGPGKYNRASKRLQEHPKVLVENTTLLLLEKP*EAEVYGIEWQLGPESYSPYTCWNNTQTQVLEMINYGGLELKKCC 767
G L +HIRS DIF + + + GQPPL +FL IAS++W ++++T P ++ LNPTY+ + LN++G LG NV M K+R+ D+++MLCAD LALS S+L + A +RA FF+P C P + R N +++ L++P E +VYGI+W+ ++Y+ Y W+ + +++ +++CC
Sbjct: 373 GHLVVHIRSQDIFSP---DTRFHQYGQPPLGYFLAVIASKKWDYLSVLTSGP-DKQLNPTYSVIAELNRQGYLGTNVGMHKDRSFWVDLQTMLCADNLALSHSTLSNLLLAHSRAKRFFLPWGCEPQPWTLKLNRFV--------NASMICLQRP-EVQVYGIDWRTTKDAYTVYDSWDPNSNMMEMVVSDAVKGVQRCC 559
BLAST of mRNA_H-elongata_contig16767.4225.1 vs. uniprot
Match: D8LSV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSV7_ECTSI) HSP 1 Score: 120 bits (300), Expect = 6.680e-29 Identity = 64/176 (36.36%), Postives = 101/176 (57.39%), Query Frame = 3
Query: 246 QPPLQFFLKAIASRQWSEVTIVTYSPKERWLNPTYTALEALNQKGKLGPNVNMFKNRTLHDDVRSMLCADALALSRSSLHFMTTAFTRASTFFIPSECGPGKYNRASKRLQEHPKVLVENTTLLLLEKP*EAEVYGIEWQLGPESYSPYTCWNNTQTQVLEMINYGGLE-LKKCCI 770
+PPLQF+LK I SR WS ++++T + +R NPT+ L+ L+++G LG N + +R L+ D+R MLCA+ + L++SS+ + +RA FF+P+ C G V+ + L +P + EVYGIEW+ YS Y W NT Q LEMI ++ +++CC+
Sbjct: 39 KPPLQFYLKVIGSRPWSNISVLTNARIQREFNPTFGVLQELDKQGLLGAPANFYPDRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARGG------------PFFVDR---ICLYRP-DVEVYGIEWKTTLNEYSVYDEWINTDAQRLEMITSDEVKSIQRCCV 198
BLAST of mRNA_H-elongata_contig16767.4225.1 vs. uniprot
Match: A0A6H5K7B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B3_9PHAE) HSP 1 Score: 108 bits (271), Expect = 1.420e-22 Identity = 66/200 (33.00%), Postives = 101/200 (50.50%), Query Frame = 3
Query: 168 GTLAMHIRSGDIFKSSHNNPKIQRSGQPPLQFFLKAIASRQWSEVTIVTYS--PKERWLNPTYTALEALNQKGKLGPNVNMFKNRTLHDDVRSMLCADALALSRSSLHFMTTAFTRASTFFIPSECGPGKYNRASKRLQEHPKVLVENTTLLLLEKP*EAEVYGI-EWQLGPESYSPYTCWNNTQTQVLEMINY--GGLE 752
G L +H+RSGDIF H + GQPPLQ++++AI ++W V +VT + +NP ALEA +G+L N++ KNRT+ +D+R M+CAD +RS+L + + + A + P C E L E+P +V+G+ W + Y+ Y WNNT Q+ EM+ + GG E
Sbjct: 365 GNLVVHVRSGDIFVRPHPD-----YGQPPLQYYVRAIQDQEWDRVDVVTDGIVDETHAINPVVPALEAKVAEGELAGNIHFHKNRTIGEDLRYMICADGFVAARSTLRHVVSHHSSAKRMYFPMACN-------------------EKLKTLSTERP-GTQVFGMASWN---DQYTVYQRWNNTADQLTEMMTFDVGGFE 536
BLAST of mRNA_H-elongata_contig16767.4225.1 vs. uniprot
Match: D7G2M2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2M2_ECTSI) HSP 1 Score: 103 bits (257), Expect = 9.070e-21 Identity = 73/220 (33.18%), Postives = 109/220 (49.55%), Query Frame = 3
Query: 123 KNILEGNTTGDTIKGGTLAMHIRSGDIFKSSHNNPKIQRSGQPPLQFFLKAIASRQWSEVTIVTY--SPKERWLNPTYTALEALNQKGKLGPNVNMFKNRTLHDDVRSMLCADA-LALSRSSLHFMTTAFTRASTFFIPSECGPGK--YNRASKRLQEHPKVLVENTTLLLLEKP*EA-EVYGIEWQLGPESYSPYTCWNNTQTQVLEMINYGGLELKKC 764
K L G+ + TL +H+RSGDIF +P GQPPLQ++++AI ++W V IVT + K +NP ALE + +G+L N+ K+RT+ +D SM+C L +RSSL + + AS + P C Y R S + +L L+ +A +VYG++ G E YS WNNT QV EM+ + ++C
Sbjct: 302 KKNLVGSEEEEGRPANTLVIHVRSGDIFV----DPAAPGYGQPPLQYYVRAIKHQKWDRVDIVTNGRTKKMNVMNPVIPALEVMFAEGELTGNIYFHKDRTMEEDFLSMMCVGGGLVTARSSLSLLLAHHSSASRLYFPRPCAGSLEFYTRGSP-----------DASLNDLDDELQAVKVYGVK-PPGMERYSLDVSWNNTADQVNEMLTFNVSSFEQC 505
BLAST of mRNA_H-elongata_contig16767.4225.1 vs. uniprot
Match: D7G610_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G610_ECTSI) HSP 1 Score: 97.4 bits (241), Expect = 5.970e-19 Identity = 65/201 (32.34%), Postives = 92/201 (45.77%), Query Frame = 3
Query: 168 GTLAMHIRSGDIFKSSHNNPKIQRSGQPPLQFFLKAIASRQWSEVTIVTYSPKERWLNPTYTALEALNQKGKLGPNVNMFKNRTLHDDVRSMLCADALALSRSSLHFMTTAFTRASTFFIPSECGPGKYNRASKRLQEHPKVLVENTTLLLLEKP*EAEVYGIEWQLGPESYSPYTCWNNTQTQVLEMINYGGLELKKCCI 770
G L +H+RSGDIF + GQPPLQF+L + + W + +VT +NP AL A+ G L NV R++ +D++SMLCAD+L L++SSL + + A+ + P C A R PK +VYG++ SYS Y W NT Q EM+ Y + CI
Sbjct: 230 GNLVLHVRSGDIFFDR----VVPYKGQPPLQFYLLLMQDQPWDRIDVVTNGQNWDNVNPVVPALMAMRATGALPDNVYFHTERSMGEDLQSMLCADSLGLAKSSLVNFLSYHSTANRVYYPWRCNHDLRELARLR----PKT----------------KVYGLQLDRSG-SYSVYRHWENTPEQRAEMLGYNVTTTFQRCI 405
BLAST of mRNA_H-elongata_contig16767.4225.1 vs. uniprot
Match: D7G1L4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L4_ECTSI) HSP 1 Score: 94.4 bits (233), Expect = 1.360e-17 Identity = 66/200 (33.00%), Postives = 96/200 (48.00%), Query Frame = 3
Query: 168 GTLAMHIRSGDIFKSSHNNPKIQRSGQPPLQFFLKAIASRQWSEVTIVT--YSPKERWLNPTYTALEALNQKGKLGPNVNMFKNRTLHDDVRSMLCADALALSRSSLHFMTTAFTRASTFFIPSECGPGKYNRASKRLQEHPKVLVENTTLLLLEKP*EAEVYGI-EWQLGPESYSPYTCWNNTQTQVLEMI--NYGGLE 752
G L MH+RSGDIF S P GQ ++++AI +QW V +VT K +NP ALEA KG+L N++ KNRT+ +D+ SM+CAD +RS+L + + + A + P+ C E L E P +V+G+ W Y+ + WNNT Q+ EM+ + GG E
Sbjct: 363 GNLVMHVRSGDIFVS----PAHPGYGQ----YYVQAIQDQQWDRVDVVTNGIEDKNHAINPIVPALEAKVAKGQLPGNIHFHKNRTMEEDLLSMICADGFVAARSTLGRVVSHLSSAKRMYFPTSCN-------------------EELKNLGTEGP-GTQVFGMASWD---HEYTVFRRWNNTADQIAEMMTADVGGFE 531
BLAST of mRNA_H-elongata_contig16767.4225.1 vs. uniprot
Match: A0A7S3AYY4_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AYY4_9EUKA) HSP 1 Score: 68.6 bits (166), Expect = 2.300e-9 Identity = 66/222 (29.73%), Postives = 97/222 (43.69%), Query Frame = 3
Query: 153 DTIKGGTLAMHIRSGDIFKS--------SHN--NPKIQRSGQPPLQFFLKAIASR-----QWSEVTIVTYSPKERWLNPTYTALEALNQKGKLGPNVNMFKNRTLHDDVRSMLCADALALSRSSLH--FMTTAFTRASTFFIPSEC-----GPGKYNRASK----RLQEHPKVLVENTTLLLLEKP*EAEVYGIE-WQLGPE-SYSPYTCWNNTQTQVLEMI 734
D + TL MHIRSGD+F +H N + GQPPL F+L+A+A + V + SP NP L+ Q L + + + +L DD++ +LCA L L+ SS+ FM R T+ C G Y + + + P V+N T YG++ W + PE SYSP + WNN+ Q +EM+
Sbjct: 88 DLQQDSTLVMHIRSGDLFTDWKDGERIFTHKGYNSDMSHRGQPPLAFYLRAMAHALPAPPEPPGVVYLVTSPD--LANPVVKLLKHQAQLHALRYKLVVSASSSLQDDLKLLLCARNLVLAASSMGTLFMDGPRLR-KTYSFHHSCHKNTTGQSSYGNVALAPEGQCESAPAWCVQNATC--------TGAYGVQNWCVHPEQSYSPLSKWNNSDAQQVEML 298 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16767.4225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16767.4225.1 >prot_H-elongata_contig16767.4225.1 ID=prot_H-elongata_contig16767.4225.1|Name=mRNA_H-elongata_contig16767.4225.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp MHIRSGDIFKSSHNNPKIQRSGQPPLQFFLKAIASRQWSEVTIVTYSPKEback to top mRNA from alignment at H-elongata_contig16767:1762..3845+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16767.4225.1 ID=mRNA_H-elongata_contig16767.4225.1|Name=mRNA_H-elongata_contig16767.4225.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2084bp|location=Sequence derived from alignment at H-elongata_contig16767:1762..3845+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16767:1762..3845+ >mRNA_H-elongata_contig16767.4225.1 ID=mRNA_H-elongata_contig16767.4225.1|Name=mRNA_H-elongata_contig16767.4225.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at H-elongata_contig16767:1762..3845+ (Himanthalia elongata Himel1 dioecious)back to top |