mRNA_H-elongata_contig16752.4212.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig16752.4212.1 vs. uniprot
Match: D8LDP1_ECTSI (Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP1_ECTSI) HSP 1 Score: 383 bits (984), Expect = 3.260e-125 Identity = 196/250 (78.40%), Postives = 214/250 (85.60%), Query Frame = 1
Query: 1 RCYEAEESIRQETRLWDEKKKATQVMRVKEGESDYRYFPEPDIPPLVLSEELIQRWRSELCELPAGKRERYQSELGLSESEAEALSDDQYVALYFEEAVAAGSDSKEACKWLTGDIAGYLKSEKSSIEGVALKPSGLAELVRLVKEKKISGRIAKELLPALLG-EWRGGVWEFVEKEGMQAINDPSEIEAFVRDVMMANADKVEQYRNGKGKLAGFFVGQAVERSGGKADPETTQDVARRMLDDVAIEVG 747
RCYE +E IRQETRLWDEKKKATQ+MRVKEGE+DYRYFPEPDIPPL L EL+QRWRSELCELPAGKRERYQSELGLSE +A ALSDDQ VALYFEEAV AGSD EACKWL GDIAGYL S+K I + L PSGLAELV L++E+KISGRIAKELLP LLG EW GGV E VE+ GMQAINDP+EIE FVRDVM ANADKVEQ+R+GK KL GFFVGQAV SGGKADPE T +VARR+L+DV +E G
Sbjct: 329 RCYETDEVIRQETRLWDEKKKATQIMRVKEGEADYRYFPEPDIPPLALPAELLQRWRSELCELPAGKRERYQSELGLSEEDASALSDDQSVALYFEEAVGAGSDPGEACKWLIGDIAGYLNSKKKGIREIGLTPSGLAELVGLIRERKISGRIAKELLPELLGGEWEGGVEELVEERGMQAINDPAEIEGFVRDVMKANADKVEQFRSGKTKLQGFFVGQAVALSGGKADPELTGEVARRLLEDVGVEAG 578
BLAST of mRNA_H-elongata_contig16752.4212.1 vs. uniprot
Match: A0A836CP17_9STRA (Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP17_9STRA) HSP 1 Score: 278 bits (711), Expect = 1.440e-84 Identity = 146/243 (60.08%), Postives = 180/243 (74.07%), Query Frame = 1
Query: 1 RCYEAEESIRQETRLWDEKKKATQVMRVKEGESDYRYFPEPDIPPLVLSEELIQRWRSELCELPAGKRERYQSELGLSESEAEALSDDQYVALYFEEAVAAGSDSKEACKWLTGDIAGYLKSEKSSIEGVALKPSGLAELVRLVKEKKISGRIAKELLPALL-GEWRGGVWEFVEKEGMQAINDPSEIEAFVRDVMMANADKVEQYRNGKGKLAGFFVGQAVERSGGKADPETTQDVARRMLD 726
+CYE E+IRQETRLWDEK+K T++MRVKEGESDYRYFPEPDIPPL L +I WR+ELCELPA KR RY+SE LSE++AE ++DDQ VA YFE A+AAG+D EA KW+ GDIA Y+ +I + L P LAE+V L++ +I+G+IAKELLP LL G GGV V++ GM+ I D + IE VR+VM NADKVEQYR GK +LAGFFVGQ++ SG +ADP T Q V + MLD
Sbjct: 320 KCYETGETIRQETRLWDEKEKVTKIMRVKEGESDYRYFPEPDIPPLRLPRAVIDGWRAELCELPAEKRARYRSEYKLSEADAETITDDQTVAAYFEAAIAAGADPSEAAKWILGDIAAYVNKAAVAITDIGLTPPLLAEMVTLIQGGRITGKIAKELLPELLEGGCEGGVAAVVKERGMEVITDVTVIEGVVREVMEKNADKVEQYRGGKAQLAGFFVGQSMALSGSRADPGTLQRVVKAMLD 562
BLAST of mRNA_H-elongata_contig16752.4212.1 vs. uniprot
Match: A0A6H5JQ32_9PHAE (GatB_Yqey domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ32_9PHAE) HSP 1 Score: 257 bits (657), Expect = 1.100e-79 Identity = 144/250 (57.60%), Postives = 160/250 (64.00%), Query Frame = 1
Query: 1 RCYEAEESIRQETRLWDEKKKATQVMRVKEGESDYRYFPEPDIPPLVLSEELIQRWRSELCELPAGKRERYQSELGLSESEAEALSDDQYVALYFEEAVAAGSDSKEACKWLTGDIAGYLKSEKSSIEGVALKPSGLAELVRLVKEKKISGRIAKELLPALLG-EWRGGVWEFVEKEGMQAINDPSEIEAFVRDVMMANADKVEQYRNGKGKLAGFFVGQAVERSGGKADPETTQDVARRMLDDVAIEVG 747
RCYE +E IRQETRLWDEKKKATQ+MRVKEGE+DYRYFPEPDIPPL L EL QRWRSELCELP I + L PSGLAELV L++E+ ISGRIAKELLP LLG EW GGV E V++ GMQAINDP+EIE FVRDVM ANADKVEQ+R+GK KL GFFVGQAV SGGKADPE T +VARR+L+DV +E G
Sbjct: 118 RCYETDEIIRQETRLWDEKKKATQIMRVKEGEADYRYFPEPDIPPLALPAELRQRWRSELCELPG-------------------------------------------------------------IREIGLTPSGLAELVGLIRERNISGRIAKELLPELLGGEWEGGVEELVQERGMQAINDPAEIEVFVRDVMEANADKVEQFRSGKTKLQGFFVGQAVALSGGKADPELTGEVARRLLEDVGVEDG 306
BLAST of mRNA_H-elongata_contig16752.4212.1 vs. uniprot
Match: A0A7S3Y3T3_HETAK (Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3T3_HETAK) HSP 1 Score: 263 bits (671), Expect = 1.990e-76 Identity = 134/256 (52.34%), Postives = 173/256 (67.58%), Query Frame = 1
Query: 4 CYEAEESIRQETRLWDEKKKATQVMRVKEGESDYRYFPEPDIPPLVLSEELIQRWRSELCELPAGKRERYQSELGLSESEAEALSDDQYVALYFEEAVAAGSDS---KEACKWLTGDIAGYLKSEKSSIEGVALKPSGLAELVRLVKEKKISGRIAKELLPALLGEWRGGVWEFVEKEGMQAINDPSEIEAFVRDVMMANADKVEQYRNGKGKLAGFFVGQAVERSGGKADPETTQDVARRMLDDVAIEVGT*PRA 762
YEA E +RQETRLWDEK+ +++MRVKEGE+DYRYFPEPDIPPL L +L+ W++ L ELPA KR RY +LGL +A L+DDQ A YFE AVAAG E CKWL GD+AG+L + + L+P+GLA++V L+ ++I+G+IAK+LLP LL W G E V GM+AINDP+ I V + N DKVE YR GK KLAGFF+GQA+ +SGG+ADPET+Q + +LD+ + P A
Sbjct: 305 AYEAGEGVRQETRLWDEKELVSKIMRVKEGEADYRYFPEPDIPPLRLDADLLSAWKAALVELPAAKRARYVRDLGLDAEQARVLTDDQQTAAYFEAAVAAGGAGCAPVEVCKWLIGDVAGHLAKTRRAAAEAKLRPAGLAQMVELIAARRITGKIAKDLLPDLLDSWEGTPAELVAARGMEAINDPAAIREIVLRIFAENQDKVEAYRGGKTKLAGFFLGQAMTQSGGRADPETSQRITMELLDNPELVAAAAPAA 560
BLAST of mRNA_H-elongata_contig16752.4212.1 vs. uniprot
Match: F4XIA3_9CYAN (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=25 Tax=Cyanobacteria TaxID=1117 RepID=F4XIA3_9CYAN) HSP 1 Score: 250 bits (638), Expect = 1.620e-74 Identity = 128/240 (53.33%), Postives = 174/240 (72.50%), Query Frame = 1
Query: 4 CYEAEESIRQETRLWDEKKKATQVMRVKEGESDYRYFPEPDIPPLVLSEELIQRWRSELCELPAGKRERYQSELGLSESEAEALSDDQYVALYFEEAVAAGSDSKEACKWLTGDIAGYLKSEKSSIEGVALKPSGLAELVRLVKEKKISGRIAKELLPALLGEWRGGVWEFVEKEGMQAINDPSEIEAFVRDVMMANADKVEQYRNGKGKLAGFFVGQAVERSGGKADPETTQDVARRML 723
EA +SI QETRLW+E + T MR KEG SDYRYFPEPD+PP+ +S E +++WRSEL ELPA KR RY+SELGLS +A L+DD+ VA YFE +VAA ++ K+A W+ GDIA YLK+EK +I +ALKP+ LAEL+ L+ + ISG+IAKE+LP LL + G E VE++G+ I+DP ++ + +V+ AN K+EQYRNGK KL GFFVGQ ++++ G+ADP+ T + + L
Sbjct: 254 AVEAGKSIIQETRLWEEGSQRTISMRTKEGSSDYRYFPEPDLPPIEVSTEQLEQWRSELAELPAQKRHRYESELGLSAYDARVLTDDRQVAEYFETSVAANANPKQAANWVMGDIAAYLKTEKLAITEIALKPNTLAELINLIDDDTISGKIAKEILPELLSQG-GSARELVERKGLIKISDPDQLSTIIDEVLAANPKKLEQYRNGKTKLQGFFVGQVMKKTSGRADPKLTNQILGKKL 492
BLAST of mRNA_H-elongata_contig16752.4212.1 vs. uniprot
Match: K9WKR9_9CYAN (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=4 Tax=Oscillatoriales TaxID=1150 RepID=K9WKR9_9CYAN) HSP 1 Score: 247 bits (630), Expect = 2.420e-73 Identity = 128/241 (53.11%), Postives = 176/241 (73.03%), Query Frame = 1
Query: 4 CYEAEESIRQETRLWDEKKKATQVMRVKEGESDYRYFPEPDIPPLVLSEELIQRWRSELCELPAGKRERYQSELGLSESEAEALSDDQYVALYFEEAVAAGSDSKEACKWLTGDIAGYLKSEKSSIEGVALKPSGLAELVRLVKEKKISGRIAKELLPALLGEWRGGVWEFVEKEGMQAINDPSEIEAFVRDVMMANADKVEQYRNGKGKLAGFFVGQAVERSGGKADPETTQDVARRMLD 726
EA E I QETRLW+E + T MRVKEG SDYRYFPEPD+PP+ +S+E +++W SEL ELPA KR RY+SELGLS +A L+DD+ VA YFE AVA G+++K+ W+ GDIA YL +EK +I +ALKP+ LAEL+ L+++ ISG+IAKE+LP LL + G E VE++G+ I+D S++EA + +V+ AN ++EQYR GK KL GFFVGQ +++S G+ADP+ T + + L+
Sbjct: 254 AVEAGERIIQETRLWEEGSQRTISMRVKEGSSDYRYFPEPDLPPIEVSKEQLEQWGSELPELPAQKRHRYESELGLSAYDARVLTDDRQVAEYFEAAVATGANAKQTANWVMGDIAAYLNNEKVAIAEIALKPTTLAELINLIEDGTISGKIAKEILPELLAQG-GSAKELVERKGLIQISDTSQLEAIIDEVIAANPKELEQYRKGKTKLQGFFVGQVMKKSSGRADPKLTNQILGKKLN 493
BLAST of mRNA_H-elongata_contig16752.4212.1 vs. uniprot
Match: A0A6B3MEY2_9CYAN (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=6 Tax=Cyanobacteria TaxID=1117 RepID=A0A6B3MEY2_9CYAN) HSP 1 Score: 244 bits (624), Expect = 2.020e-72 Identity = 124/235 (52.77%), Postives = 174/235 (74.04%), Query Frame = 1
Query: 19 ESIRQETRLWDEKKKATQVMRVKEGESDYRYFPEPDIPPLVLSEELIQRWRSELCELPAGKRERYQSELGLSESEAEALSDDQYVALYFEEAVAAGSDSKEACKWLTGDIAGYLKSEKSSIEGVALKPSGLAELVRLVKEKKISGRIAKELLPALLGEWRGGVWEFVEKEGMQAINDPSEIEAFVRDVMMANADKVEQYRNGKGKLAGFFVGQAVERSGGKADPETTQDVARRML 723
+SI QETRLW+E + T MR KEG SDYRYFPEPD+PP+ +S+EL+++WRS+L ELPA KR RY+ ELGLS +A L+DD+ VA YFE AV+AG++SK+A W+ GDIA YL +EK IE +ALKP LAEL++L+++ ISG+IAKE+LP LL + G E VE +G+ I+D ++E + +++ A+ ++EQYRNGK KL GFFVGQ ++++ G+ADP+ T + + L
Sbjct: 261 DSIVQETRLWEEGSQRTISMRSKEGSSDYRYFPEPDLPPIEVSKELLEQWRSQLVELPAQKRSRYEQELGLSAYDARVLTDDRSVAEYFEAAVSAGANSKQAANWVMGDIAAYLNNEKLEIEQIALKPVVLAELIKLIEDGTISGKIAKEILPELLSQG-GSAKELVESKGLIQISDKGQLEVIIDEIISAHPKELEQYRNGKTKLQGFFVGQVMKKTSGRADPKLTNQILGKKL 494
BLAST of mRNA_H-elongata_contig16752.4212.1 vs. uniprot
Match: U5DM23_9CHRO (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Rubidibacter lacunae KORDI 51-2 TaxID=582515 RepID=U5DM23_9CHRO) HSP 1 Score: 244 bits (623), Expect = 2.840e-72 Identity = 130/241 (53.94%), Postives = 170/241 (70.54%), Query Frame = 1
Query: 1 RCYEAEESIRQETRLWDEKKKATQVMRVKEGESDYRYFPEPDIPPLVLSEELIQRWRSELCELPAGKRERYQSELGLSESEAEALSDDQYVALYFEEAVAAGSDSKEACKWLTGDIAGYLKSEKSSIEGVALKPSGLAELVRLVKEKKISGRIAKELLPALLGEWRGGVWEFVEKEGMQAINDPSEIEAFVRDVMMANADKVEQYRNGKGKLAGFFVGQAVERSGGKADPETTQDVARRML 723
+ E+ E I QETRLWDE K+ T MR KEG SDYRYFPEPDIPPL ++ E + W +EL ELPA KR+RY LGLS +A L+DD+ VA YFE AVAAG+D+K+A W+T D+A YL + K +I +AL P+ LAELV+L+ + ISG+IAKE+LP LL E G + VE +G+ I+DPSE+E V +++ AN DKVEQ+RNGK KL GFFVGQ ++ +GG+ADP+ + L
Sbjct: 254 KAIESGEDIVQETRLWDEGKQRTTSMRKKEGSSDYRYFPEPDIPPLEITTEQLDTWTAELPELPAKKRDRYAKSLGLSVYDARVLTDDRLVAEYFETAVAAGADAKQAANWVTQDVAAYLNNNKLAIADIALTPATLAELVQLIAKGTISGKIAKEILPELLTEG-GSAEKLVESKGLTQISDPSELERVVDELLAANPDKVEQFRNGKTKLQGFFVGQMMKATGGRADPKLANKILTAKL 493
BLAST of mRNA_H-elongata_contig16752.4212.1 vs. uniprot
Match: W7U0I3_9STRA (Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0I3_9STRA) HSP 1 Score: 242 bits (617), Expect = 3.510e-72 Identity = 133/253 (52.57%), Postives = 176/253 (69.57%), Query Frame = 1
Query: 1 RCYEAEESIRQETRLWDEKKKATQVMRVKEGESDYRYFPEPDIPPLVLSEELIQRWRSELCELPAGKRERYQSELGLSESEAEA---LSDDQYVALYFEEAVAA-GSDSKEACKWLTGDIAGYLKSEKSSIEG---VALKPSGLAELVRLVKEKKISGRIAKELLPALLGEWRGG----VWEFVEKEGMQAINDPSEIEAFVRDVMMANADKVEQYRNGKGKLAGFFVGQAVERSGGKADPETTQDVARRMLD 726
R Y+A E++RQETR+WDEK+ A+++MRVKEGESDYRYFPEPD+PPL L+ ++Q WR+ L ELPA KR RYQ GL+ +AE L+DD VA +FE AV G++ KEA KWL GDIAG+L K ++ + L P+GLAELV L+ + KI+G+IAKELLP LL EW GG V + V+ G++AI DP+ I A V+ V+ AN +KVE +R GK KL GFFVG ++ SG +A+PE Q + L+
Sbjct: 174 RAYDAGEAVRQETRMWDEKELASKLMRVKEGESDYRYFPEPDVPPLALASSVVQAWRATLQELPAAKRARYQDPAGLN-LDAETTKFLTDDLAVARFFEAAVEQHGAEPKEAAKWLVGDIAGHLNGNKGRVKEFGKIKLTPAGLAELVGLIGQGKITGKIAKELLPELLDEWEGGEEGAVLDLVQARGLEAITDPAVIAALVQKVLEANPEKVEDFRGGKTKLLGFFVGMVLKESGSRANPEVVQSLTVEALN 425
BLAST of mRNA_H-elongata_contig16752.4212.1 vs. uniprot
Match: A0A6J4HVZ3_9CYAN (Aspartyl-tRNA(Asn) amidotransferase subunit B @ Glutamyl-tRNA(Gln) amidotransferase subunit B n=1 Tax=uncultured Coleofasciculus sp. TaxID=1267456 RepID=A0A6J4HVZ3_9CYAN) HSP 1 Score: 236 bits (602), Expect = 3.630e-71 Identity = 123/241 (51.04%), Postives = 171/241 (70.95%), Query Frame = 1
Query: 4 CYEAEESIRQETRLWDEKKKATQVMRVKEGESDYRYFPEPDIPPLVLSEELIQRWRSELCELPAGKRERYQSELGLSESEAEALSDDQYVALYFEEAVAAGSDSKEACKWLTGDIAGYLKSEKSSIEGVALKPSGLAELVRLVKEKKISGRIAKELLPALLGEWRGGVWEFVEKEGMQAINDPSEIEAFVRDVMMANADKVEQYRNGKGKLAGFFVGQAVERSGGKADPETTQDVARRMLD 726
EA E I QETRLW+E + T MRVKEG SDYRYFPEPD+PP+ +S E ++ WR+ L ELPA KR RY+ ELGLS +A L+DD+ VA YFE+A+A ++ K+ W+ GDIA YL +EK I +AL P LAEL+ L+++ ISG+IAK++LP LL + G V E VE++G+ I+D +E+EA + +V+ AN ++EQYRNGK KL GFFVGQ ++++ G+ADP+ T + + L+
Sbjct: 89 AVEAGERIIQETRLWEEGSQRTISMRVKEGSSDYRYFPEPDLPPIEVSIEQLEEWRATLPELPAQKRHRYEGELGLSAYDARVLTDDRLVAEYFEKAIATAANPKQTANWVMGDIAAYLNNEKLLITQIALTPEVLAELITLIEDGTISGKIAKDILPELLTQG-GSVKELVERKGLIQISDTAELEAMIDEVIAANPKELEQYRNGKTKLQGFFVGQVMKKTNGRADPKLTNQILGKKLN 328 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16752.4212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16752.4212.1 >prot_H-elongata_contig16752.4212.1 ID=prot_H-elongata_contig16752.4212.1|Name=mRNA_H-elongata_contig16752.4212.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=226bp MRVKEGESDYRYFPEPDIPPLVLSEELIQRWRSELCELPAGKRERYQSELback to top mRNA from alignment at H-elongata_contig16752:3891..6992- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16752.4212.1 ID=mRNA_H-elongata_contig16752.4212.1|Name=mRNA_H-elongata_contig16752.4212.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3102bp|location=Sequence derived from alignment at H-elongata_contig16752:3891..6992- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16752:3891..6992- >mRNA_H-elongata_contig16752.4212.1 ID=mRNA_H-elongata_contig16752.4212.1|Name=mRNA_H-elongata_contig16752.4212.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1356bp|location=Sequence derived from alignment at H-elongata_contig16752:3891..6992- (Himanthalia elongata Himel1 dioecious)back to top |