mRNA_H-elongata_contig167511.4211.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig167511.4211.1
Unique NamemRNA_H-elongata_contig167511.4211.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig167511.4211.1 vs. uniprot
Match: D8LHJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ2_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 3.210e-22
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:    1 TLAGVELLYASLFCNGDVDVARTALTFKVSSSLRGNRRFEFGFRLGVATVLL 156
            TLAG ELLYASLFCNGDVDVARTALTFK SSSLRGNRRF+FG+RLG ATVLL
Sbjct:  436 TLAGAELLYASLFCNGDVDVARTALTFKASSSLRGNRRFDFGYRLGAATVLL 487
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BLAST of mRNA_H-elongata_contig167511.4211.1 vs. uniprot
Match: A0A6H5KJQ4_9PHAE (EXS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJQ4_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 3.210e-22
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:    1 TLAGVELLYASLFCNGDVDVARTALTFKVSSSLRGNRRFEFGFRLGVATVLL 156
            TLAG ELLYASLFCNGDVDVARTALTFK SSSLRGNRRF+FG+RLG ATVLL
Sbjct:  341 TLAGAELLYASLFCNGDVDVARTALTFKASSSLRGNRRFDFGYRLGAATVLL 392
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig167511.4211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHJ2_ECTSI3.210e-2290.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJQ4_9PHAE3.210e-2290.38EXS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig167511contigH-elongata_contig167511:93..248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue2e-18
Seed eggNOG ortholog2880.D8LHJ2
EggNOG free text desc.phosphate ion transport
EggNOG OGsCOG5409@1,KOG1162@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-23_004300.1
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929977.560631-CDS-H-elongata_contig167511:92..2481622929977.560631-CDS-H-elongata_contig167511:92..248Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167511 93..248 -
1691679231.9882903-CDS-H-elongata_contig167511:92..2481691679231.9882903-CDS-H-elongata_contig167511:92..248Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167511 93..248 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig167511.4211.1prot_H-elongata_contig167511.4211.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig167511 93..248 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig167511.4211.1

>prot_H-elongata_contig167511.4211.1 ID=prot_H-elongata_contig167511.4211.1|Name=mRNA_H-elongata_contig167511.4211.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
TLAGVELLYASLFCNGDVDVARTALTFKVSSSLRGNRRFEFGFRLGVATV
LL
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mRNA from alignment at H-elongata_contig167511:93..248-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig167511.4211.1 ID=mRNA_H-elongata_contig167511.4211.1|Name=mRNA_H-elongata_contig167511.4211.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=156bp|location=Sequence derived from alignment at H-elongata_contig167511:93..248- (Himanthalia elongata Himel1 dioecious)
ACGCTAGCCGGGGTGGAACTCCTGTACGCCTCTCTGTTCTGTAACGGTGA
CGTCGACGTGGCACGCACCGCGTTGACCTTCAAGGTCTCCAGCTCCCTTC
GGGGTAACCGACGCTTCGAATTCGGATTCCGCCTCGGGGTGGCCACTGTA
CTCTTG
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Coding sequence (CDS) from alignment at H-elongata_contig167511:93..248-

>mRNA_H-elongata_contig167511.4211.1 ID=mRNA_H-elongata_contig167511.4211.1|Name=mRNA_H-elongata_contig167511.4211.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig167511:93..248- (Himanthalia elongata Himel1 dioecious)
ACGCTAGCCGGGGTGGAACTCCTGTACGCCTCTCTGTTCTGTAACGGTGA
CGTCGACGTGGCACGCACCGCGTTGACCTTCAAGGTCTCCAGCTCCCTTC
GGGGTAACCGACGCTTCGAATTCGGATTCCGCCTCGGGGTGGCCACTGTA
CTCTTGACGCTAGCCGGGGTGGAACTCCTGTACGCCTCTCTGTTCTGTAA
CGGTGACGTCGACGTGGCACGCACCGCGTTGACCTTCAAGGTCTCCAGCT
CCCTTCGGGGTAACCGACGCTTCGAATTCGGATTCCGCCTCGGGGTGGCC
ACTGTACTCTTG
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