mRNA_H-elongata_contig167055.4194.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig167055.4194.1
Unique NamemRNA_H-elongata_contig167055.4194.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig167055.4194.1 vs. uniprot
Match: D7G354_ECTSI (COP9 signalosome complex subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G354_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.680e-16
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    4 ASAAMQEVTEWALQMRYRTTAARILDANRKFLDASVRFYELSQAQVR 144
            ASA MQEVT+WALQMRYRTTAARILDA+RKFLDASVRFYELS AQ +
Sbjct:  171 ASATMQEVTDWALQMRYRTTAARILDAHRKFLDASVRFYELSLAQSK 217
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BLAST of mRNA_H-elongata_contig167055.4194.1 vs. uniprot
Match: A0A835ZDX9_9STRA (COP9 signalosome complex subunit 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDX9_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.560e-11
Identity = 31/45 (68.89%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    4 ASAAMQEVTEWALQMRYRTTAARILDANRKFLDASVRFYELSQAQ 138
            AS  M EV  W LQ+RYRT +AR+LDANRKFLDA++R+YELSQA+
Sbjct:  159 ASPRMAEVQNWQLQLRYRTVSARVLDANRKFLDAAMRYYELSQAR 203
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BLAST of mRNA_H-elongata_contig167055.4194.1 vs. uniprot
Match: F0Y2X5_AURAN (COP9 signalosome complex subunit 4 (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2X5_AURAN)

HSP 1 Score: 58.9 bits (141), Expect = 1.010e-8
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:   34 WALQMRYRTTAARILDANRKFLDASVRFYELSQAQ 138
            WALQ+RYR T AR LDA RKFLDAS+R+YELSQA+
Sbjct:  158 WALQLRYRVTLARTLDARRKFLDASMRYYELSQAR 192
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BLAST of mRNA_H-elongata_contig167055.4194.1 vs. uniprot
Match: A0A4D9CTT1_9STRA (COP9 signalosome complex subunit 4 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTT1_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.390e-8
Identity = 28/53 (52.83%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    4 ASAAMQEVTEWALQMRYRTTAARILDANRKFLDASVRFYELSQAQVRRGGTSS 162
            AS  M+ VT++ +Q+RYR T A++LDANRKFL+A++R++ELSQ Q R    +S
Sbjct:  197 ASGLMEAVTDYWVQLRYRVTYAKVLDANRKFLEAALRYHELSQTQRREDERTS 249
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BLAST of mRNA_H-elongata_contig167055.4194.1 vs. uniprot
Match: W7TQ54_9STRA (Cop9 signalosome complex subunit 4 (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQ54_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.460e-8
Identity = 27/47 (57.45%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    4 ASAAMQEVTEWALQMRYRTTAARILDANRKFLDASVRFYELSQAQVR 144
            AS  M+ VT++ +Q+RYR T A++LDANRKFL+A++R++ELSQ Q R
Sbjct:  197 ASGLMEAVTDYWVQLRYRVTYAKVLDANRKFLEAALRYHELSQTQRR 243
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BLAST of mRNA_H-elongata_contig167055.4194.1 vs. uniprot
Match: A0A6V1T605_HETAK (COP9 signalosome complex subunit 4 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1T605_HETAK)

HSP 1 Score: 56.6 bits (135), Expect = 6.660e-8
Identity = 24/34 (70.59%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:   31 EWALQMRYRTTAARILDANRKFLDASVRFYELSQ 132
            +W+LQ+RYR T AR+LDANRKFL+A+VR++ELSQ
Sbjct:  175 DWSLQLRYRVTYARVLDANRKFLEAAVRYHELSQ 208
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BLAST of mRNA_H-elongata_contig167055.4194.1 vs. uniprot
Match: A0A7S0SZ10_9STRA (COP9 signalosome complex subunit 4 (Fragment) n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SZ10_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 7.370e-8
Identity = 26/42 (61.90%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    4 ASAAMQEVTEWALQMRYRTTAARILDANRKFLDASVRFYELS 129
            AS  M ++T+  LQ+RYR T+AR+LDANRKFL+AS+R+Y+LS
Sbjct:   61 ASQYMNDITDRHLQLRYRVTSARVLDANRKFLEASLRYYDLS 102
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BLAST of mRNA_H-elongata_contig167055.4194.1 vs. uniprot
Match: A0A8J2SNR5_9STRA (COP9 signalosome complex subunit 4 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SNR5_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.250e-7
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    4 ASAAMQEVT---EWALQMRYRTTAARILDANRKFLDASVRFYELSQA 135
            AS  M++V+    WAL +RYR T AR LDA RKFLDAS+R+YELS+A
Sbjct:  163 ASGLMRDVSASENWALHLRYRVTLARTLDARRKFLDASMRYYELSRA 209
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BLAST of mRNA_H-elongata_contig167055.4194.1 vs. uniprot
Match: A0A7S1U060_9STRA (COP9 signalosome complex subunit 4 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U060_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.310e-7
Identity = 25/43 (58.14%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    4 ASAAMQEVTEWALQMRYRTTAARILDANRKFLDASVRFYELSQ 132
            AS  M +V++ +L++RYRTT AR+LDANRKFLDA+ R+Y++S+
Sbjct:  123 ASPLMADVSDRSLELRYRTTYARVLDANRKFLDAATRYYDVSK 165
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BLAST of mRNA_H-elongata_contig167055.4194.1 vs. uniprot
Match: A0A7S2UE05_9STRA (COP9 signalosome complex subunit 4 n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UE05_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 4.810e-5
Identity = 22/35 (62.86%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:   37 ALQMRYRTTAARILDANRKFLDASVRFYELSQAQV 141
            AL +RY++T AR+LDANRKFL A+ R+++LSQAQ 
Sbjct:  173 ALILRYKSTYARVLDANRKFLQAASRYHDLSQAQT 207
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig167055.4194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7G354_ECTSI1.680e-1687.23COP9 signalosome complex subunit 4 n=1 Tax=Ectocar... [more]
A0A835ZDX9_9STRA3.560e-1168.89COP9 signalosome complex subunit 4 n=1 Tax=Tribone... [more]
F0Y2X5_AURAN1.010e-877.14COP9 signalosome complex subunit 4 (Fragment) n=1 ... [more]
A0A4D9CTT1_9STRA1.390e-852.83COP9 signalosome complex subunit 4 n=1 Tax=Nannoch... [more]
W7TQ54_9STRA1.460e-857.45Cop9 signalosome complex subunit 4 (Fragment) n=1 ... [more]
A0A6V1T605_HETAK6.660e-870.59COP9 signalosome complex subunit 4 n=1 Tax=Heteros... [more]
A0A7S0SZ10_9STRA7.370e-861.90COP9 signalosome complex subunit 4 (Fragment) n=2 ... [more]
A0A8J2SNR5_9STRA1.250e-761.70COP9 signalosome complex subunit 4 n=1 Tax=Pelagom... [more]
A0A7S1U060_9STRA2.310e-758.14COP9 signalosome complex subunit 4 n=1 Tax=Phaeomo... [more]
A0A7S2UE05_9STRA4.810e-562.86COP9 signalosome complex subunit 4 n=1 Tax=Attheya... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig167055contigH-elongata_contig167055:1016..1186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue1.7e-12
Seed eggNOG ortholog2880.D7G354
Preferred nameCOPS4
KEGG koko:K02930,ko:K12178
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0000003,GO:0000338,GO:0000715,GO:0001067,GO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0002009,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007346,GO:0007399,GO:0007423,GO:0008021,GO:0008150,GO:0008152,GO:0008180,GO:0008233,GO:0008234,GO:0009653,GO:0009887,GO:0009888,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010389,GO:0010564,GO:0010605,GO:0010971,GO:0012505,GO:0016043,GO:0016333,GO:0016604,GO:0016607,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0019784,GO:0019827,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0030054,GO:0030133,GO:0030154,GO:0030162,GO:0030182,GO:0030718,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031410,GO:0031647,GO:0031974,GO:0031981,GO:0031982,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034641,GO:0036099,GO:0036211,GO:0042176,GO:0042177,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044456,GO:0044464,GO:0044703,GO:0045202,GO:0045787,GO:0045861,GO:0045931,GO:0046483,GO:0046530,GO:0048138,GO:0048140,GO:0048232,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048592,GO:0048609,GO:0048699,GO:0048729,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051276,GO:0051704,GO:0051716,GO:0051726,GO:0060255,GO:0060429,GO:0061136,GO:0065007,GO:0065008,GO:0070011,GO:0070013,GO:0070382,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0080090,GO:0090068,GO:0090304,GO:0090596,GO:0097159,GO:0097458,GO:0097708,GO:0098727,GO:0098793,GO:0099503,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1901799,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902749,GO:1902751,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:2000058,GO:2000059
EggNOG free text desc.protein deneddylation
EggNOG OGsKOG1497@1,KOG1497@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size156
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929975.8509338-CDS-H-elongata_contig167055:1015..11711622929975.8509338-CDS-H-elongata_contig167055:1015..1171Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167055 1016..1171 -
1691679231.2858732-CDS-H-elongata_contig167055:1015..11711691679231.2858732-CDS-H-elongata_contig167055:1015..1171Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167055 1016..1171 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929975.8642375-UTR-H-elongata_contig167055:1171..11861622929975.8642375-UTR-H-elongata_contig167055:1171..1186Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig167055 1172..1186 -
1691679231.2975647-UTR-H-elongata_contig167055:1171..11861691679231.2975647-UTR-H-elongata_contig167055:1171..1186Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig167055 1172..1186 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig167055.4194.1prot_H-elongata_contig167055.4194.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig167055 1016..1171 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig167055.4194.1

>prot_H-elongata_contig167055.4194.1 ID=prot_H-elongata_contig167055.4194.1|Name=mRNA_H-elongata_contig167055.4194.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
MQEVTEWALQMRYRTTAARILDANRKFLDASVRFYELSQAQVRRGGTSSF
F*
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mRNA from alignment at H-elongata_contig167055:1016..1186-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig167055.4194.1 ID=mRNA_H-elongata_contig167055.4194.1|Name=mRNA_H-elongata_contig167055.4194.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig167055:1016..1186- (Himanthalia elongata Himel1 dioecious)
CAGGCCTCGGCTGCAATGCAGGAGGTGACGGAATGGGCCCTGCAGATGCG
ATACCGGACCACGGCCGCCCGAATACTGGACGCCAACAGAAAATTCCTGG
ATGCTTCCGTGCGGTTCTATGAACTCAGCCAGGCCCAGGTGCGTCGTGGT
GGTACTAGTTCTTTTTTTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig167055:1016..1186-

>mRNA_H-elongata_contig167055.4194.1 ID=mRNA_H-elongata_contig167055.4194.1|Name=mRNA_H-elongata_contig167055.4194.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig167055:1016..1186- (Himanthalia elongata Himel1 dioecious)
ATGCAGGAGGTGACGGAATGGGCCCTGCAGATGCGATACCGGACCACGGC
CGCCCGAATACTGGACGCCAACAGAAAATTCCTGGATGCTTCCGTGCGGT
TCTATGAACTCAGCCAGGCCCAGGTGCGTCGTGGTGGTACTAGTTCTTTT
TTTTAAATGCAGGAGGTGACGGAATGGGCCCTGCAGATGCGATACCGGAC
CACGGCCGCCCGAATACTGGACGCCAACAGAAAATTCCTGGATGCTTCCG
TGCGGTTCTATGAACTCAGCCAGGCCCAGGTGCGTCGTGGTGGTACTAGT
TCTTTTTTTTAA
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