mRNA_H-elongata_contig16647.4173.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16647.4173.1
Unique NamemRNA_H-elongata_contig16647.4173.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig16647.4173.1 vs. uniprot
Match: UPI001244D623 (uncharacterized protein LOC115964702 n=1 Tax=Quercus lobata TaxID=97700 RepID=UPI001244D623)

HSP 1 Score: 80.9 bits (198), Expect = 2.130e-13
Identity = 84/311 (27.01%), Postives = 133/311 (42.77%), Query Frame = 1
Query:   19 CAAHAVDLLLKDFGNLDFFADTLKRINKVVKFVKNHHGTSAIHESHTNLR-LITPCATRFTTNVIVAMRMLKASVSSVSDYIRTATVAS---VRAAGREVVSEISAGDALVGEFWFEVNVFVQLMEPLSALLRMGDGE---SVTYAAEGEDWKDLDISTRMVAMKEKAA---KRLNYVW----NPMMSATFSLDPEYRNVNLLNTRNGQILKDLNTMFMRLLISHG-NDPVAAISAAEDEPEGGPVRKAGSQFTRFKSGKWHGADLLGYAKSMAPTDWWETYGVGMRELAELTVKVTSKVPASAGAECNWS 906
            CAAH +DL+LKD G +   A TL+R  ++  ++ NH G   +   +TN R L+    TRF T+ +      K   S  + +     V S     A  + VV  I     L+  FW  +   +++M PL  +L   D E   +++Y  E  D     I       KE+ +   K ++  W    +P+ +    L+P+Y   +     N +I  +L     RL+ S    D +    +   + EG      G Q +R               K+ APT+WW  YG     L +LT+K+ S   ++ G E NWS
Sbjct:   64 CAAHCIDLILKDIGKIPRIAKTLERAIQLTGYIYNHGGVLKMMREYTNQRELVRTGKTRFCTSYLTIKSTFKQKHSLRAMFTSEEWVHSRWAKEANAKRVVEMI-----LMPSFWNTIVYILKVMGPLVRVLPSVDNERKPTMSYIYEAMDRAKEAIIKAFNENKERYSNIFKIIDERWECQLHPLHAVGHFLNPKYFYFDPNIVTNHEITAELYACIQRLVPSTKIQDKIMVELSMYKKAEG----LFGIQRSR---------------KTRAPTEWWSLYGSSTPNLQQLTIKILSLTCSACGCERNWS 350          
BLAST of mRNA_H-elongata_contig16647.4173.1 vs. uniprot
Match: A0A843VI85_COLES (BED-type domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843VI85_COLES)

HSP 1 Score: 79.3 bits (194), Expect = 9.890e-13
Identity = 82/317 (25.87%), Postives = 124/317 (39.12%), Query Frame = 1
Query:   19 CAAHAVDLLLKDFGNLDFFADTLKRINKVVKFVKNHHGTSAIHESHTNLRLITPCATRFTTNVIVAM----------RMLKASVSSVSDYIRTATVASVRAAGREVVSEISAGDALVGEFWFEVNVFVQLMEPLSALLRMGDGE-----SVTYAA-EGEDWKDLDISTRMVAMKEKAAKRLNYVWNPMMS-----ATFSLDPEYRNVNLLNTRNGQILKDLNTMFMRLLISHGNDPVAAISAAEDEPEGGPVRKAGSQFTRFKSGKWHGADLLGYAKSMAPTDWWETYGVGMRELAELTVKVTSKVPASAGAECNWS 906
            CAAH VDL+LK+ G L      +    K+ +F+ NHH   A     T   L+ P  TRF TN +             RM +      S++  T+        G+EV   +++ +     FW  V   VQ++EPL  +LR+ DG+      + YA  E    K  ++S R   +       ++  W+  MS     A + L P Y   + L   +     DL   F R++      PV A  A ++                                    TDWW  +G     L ++ VKV S+  +S+G E NWS
Sbjct:  445 CAAHCVDLMLKEIGTLQPVKMVVDAGQKITRFIYNHHLVLAWMRESTGGELLRPGVTRFATNFVALQSLLKHKDGLKRMFRGDKWLQSNFANTSD-------GKEVEGIVNSSN-----FWDRVFKLVQIIEPLYEVLRVVDGDRRPSIGLVYAKLEAARKKIREVSPRHAHL---VLDVVDDRWDRQMSRDLHMAAYYLHPAYHYAHELAYDD-----DLTAAFARVVERLSRSPVLAADAIDEA-----------------------------------TDWWFNFGHSAPTLRKIAVKVLSQTSSSSGCERNWS 706          
BLAST of mRNA_H-elongata_contig16647.4173.1 vs. uniprot
Match: A0A151TGM2_CAJCA (Uncharacterized protein n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TGM2_CAJCA)

HSP 1 Score: 79.0 bits (193), Expect = 9.910e-13
Identity = 78/318 (24.53%), Postives = 143/318 (44.97%), Query Frame = 1
Query:   19 CAAHAVDLLLKDFGNLDFFADTLKRINKVVKFVKNHHGTSAIHESHTNL-RLITPCATRFTTNVIV--AMRMLKASVSSV--SDYIRTATVASVRAAGREVVSEISAGDALVGEFWFEVNVFVQLMEPLSALLRMGDGESVT---YAAEGEDWKDLDISTRMVAMK---EKAAKRLNYVWN-----PMMSATFSLDPEYRNVNLLNTRNGQILKDLNTMFMRLLISHGNDPVAAISAAEDEPEGGPVRKAGSQFTRFKSGKWHGADLLGYAKSMAPTD------WWETYGVGMRELAELTVKVTSKVPASAGAECNWS 906
            CAAH +DL+L+D G L  F +T+    K+  ++  H     ++  ++N   L  P  TRF T+ +    ++  K ++ S+  S+   T+  AS ++  ++V++ + + D     FW  +   ++ + PL  +LR+ DG+S     Y  E  D     I+      +   +K  K ++  WN     P+ +A + L+P Y      N  + ++L  L   F R++      P        D+           Q  +FK  K    ++ G   ++A  D      WWE+YG   +EL ++ +++ S   ++ G E NWS
Sbjct:  138 CAAHCLDLILEDIGELPVFYNTIANAKKITTYIYRHTWVLNLYRQYSNGGELARPAVTRFATSYLTLNCIKQQKNALRSMFASEEWATSPHAS-KSEAKQVMNLVLSDD----RFWRSITYCLKCVIPLVKVLRLVDGDSKPASPYIYEAMDRAKEKIAQNFQMQESRYKKVWKIIDTRWNLQLHRPLHAAAYYLNPRYHYDKNFNP-DSEVLIGLYETFQRMV------PDIRTRVIIDQ-----------QLEKFKGAK----EIFGMDMAIATRDKKQPALWWESYGGRGKELQKVAMRILSLTCSATGCERNWS 428          
BLAST of mRNA_H-elongata_contig16647.4173.1 vs. uniprot
Match: UPI0010A3540F (uncharacterized protein LOC114760313 n=3 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A3540F)

HSP 1 Score: 78.2 bits (191), Expect = 2.000e-12
Identity = 83/328 (25.30%), Postives = 138/328 (42.07%), Query Frame = 1
Query:   19 CAAHAVDLLLKDFGNLDFFADTLKRINKVVKFVKNHHGTSAIHESHTNLR-LITPCATRFTTNVIVAMRMLKAS----VSSVSDYIRTATVASVRAAGREVVSEISAGDALVGEFWFEVNVFVQLMEPLSALLRMGDGES---VTYAAEGEDWKDLDISTRMVAMKEKAAKRLNYVWN------------PMMSATFSLDPEYRNVNLLNTRNGQILKDLNTMFMRLLISHGNDPVAAISAAEDEPEGGPVRKA----GSQFTRFKSGKWHGADLLGYAKSMA--------PTDWWETYGVGMRELAELTVKVTSKVPASAGAECNWS 906
            CAAH +DL+L+D G L  F +T+    K+  F+  H     ++  ++  + L  P  TRF T  +    +L+          SD   ++T AS ++ G++VV  +  GD+    FW  +   ++ + PL  +LR+ DG+S   + Y  E  D    +I+       EK   R   +W             P+ +A + L+P++      N  + ++   L     R++                     P RK       Q   FKS K     L G  +SMA        P  WWE+YG   +EL ++ +++ S   ++ G E NWS
Sbjct:  327 CAAHCLDLILEDIGQLPVFYNTITNAKKITTFIYRHTWVLNLYRKYSKGKELARPAVTRFATAYLTLSCILRQKNALRTMFASDDWTSSTFAS-KSEGKQVVDMVF-GDS---RFWSSIKYCLKCVSPLVKVLRLVDGDSKPAMPYIYEAMDRAKEEIADNF----EKKESRYKKIWKIIDIRWTLQLHRPLHAAAYFLNPKFHYDEKFNA-DQEVYFGLYETIERMI---------------------PDRKTRFLVDQQLEAFKSAK----GLFG--RSMAIDTRNKKQPALWWESYGGEGKELQKIAMRILSLTCSAIGCERNWS 617          
BLAST of mRNA_H-elongata_contig16647.4173.1 vs. uniprot
Match: UPI00098E0C6B (uncharacterized protein LOC109841094 n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E0C6B)

HSP 1 Score: 77.8 bits (190), Expect = 2.530e-12
Identity = 76/314 (24.20%), Postives = 137/314 (43.63%), Query Frame = 1
Query:   19 CAAHAVDLLLKDFGNLDFFADTLKRINKVVKFVKNHHGTSAIHESHTNLR-LITPCATRFTTNVIVAMRMLKASVSSVSDYIRTATVASVRAAGREVVSEISAGDALVGEFWFEVNVFVQLMEPLSALLRMGDGE---SVTYAAEGEDW-KDL------DISTRMVAMKEKAAKRLNY-VWNPMMSATFSLDPEYRNVNLLNTRNGQILKDLNTMFMRLLISHGNDPVAAISAAEDEPEGGPVRKAGSQFTRFKSGKWHGADLLGYA------KSMAPTDWWETYGVGMRELAELTVKVTSKVPASAGAECNWS 906
            CAAH ++L+LKD G L F   TL R  ++  F+ +H     +     N R L+ P  TRF ++ +    + K   +    +     V + RA  R+   + +     +  FW  V   ++L  PL  +L++ D E   ++ +  E  D  K+       D +++   + E   KR N  + +P+ +A F L+P +   +     + +I+K L  +  +L+     D ++                   + T +K  +    DL G        +  +P DWW++YG     L +LT+++ S   +S+G E NWS
Sbjct:  138 CAAHCLNLILKDIGKLPFMKMTLSRAMELTGFIYSHGWVLRLMREQINARELLRPATTRFASSFLTLSSIHKQKNNLRKMFCSEKWVENKRA--RDPKGKAAERTVKMTNFWNNVVRVLKLTGPLVRVLKLVDNERKPTMEFIYEAMDRAKEAIAKAFGDDASKYSEVFEMIDKRWNVQLHHPLHAAGFYLNPIFFYAHPNIQADKEIMKGLWEVIQKLVPEQDQDKIS------------------QELTLYKEAQ----DLFGMPIAIRNREKKSPADWWDSYGAAAPILQKLTIRILSLTCSSSGCERNWS 427          
BLAST of mRNA_H-elongata_contig16647.4173.1 vs. uniprot
Match: A0A6P6W3Z1_COFAR (uncharacterized protein LOC113729109 n=3 Tax=Coffea TaxID=13442 RepID=A0A6P6W3Z1_COFAR)

HSP 1 Score: 77.4 bits (189), Expect = 4.270e-12
Identity = 79/312 (25.32%), Postives = 136/312 (43.59%), Query Frame = 1
Query:   19 CAAHAVDLLLKDFGNLDFFADTLKRINKVVKFVKNHHGTSAIHESHTNLR-LITPCATRFTTNVIVAMRMLKASVS----SVSDYIRTATVASVRAAGREVVSEISAGDALVGE-FWFEVNVFVQLMEPLSALLRMGDGE---SVTYAAEGEDWKDLDISTRMVAMKEKAAKRLNYVWNPMM-----SATFSLDPEYRNVNLLNTRNGQILKDLNTMFMRLLISHGNDPVAAISAAEDEPEGGPVRKAGSQFTRF--KSGKWHGADLLGYAKSMAPTDWWETYGVGMRELAELTVKVTSKVPASAGAECNWS 906
            CAAH +DL+L+D G +    D +K+  ++  F+ N      + +++TN R L+ P  TRF T  I    +L+ S        S+  +    +S R   RE  +E+S  D ++ E FW +V     +MEPL  +L++ D +   ++    E  D   + I +  V   EK    ++  W   +     +A + L+P  +          ++ + L  +  RL      +P   + A           KA ++   F  K G++  A  +    +  P +WW  YG     L  + +KV S+   S+G E NWS
Sbjct:  345 CAAHCIDLMLEDIGQMKSIKDAIKQGKRITSFIYNSDKVVNLMKTYTNHRELLRPGITRFATEFIAMESLLRHSTELKRMCTSNEWQEYNSSSKR---REEAAEVS--DLILSERFWKKVRRVCAIMEPLVKVLKVIDQDKKPTLPIIYEAMDRAKMAIQSA-VKDYEKYWDIIDDRWYRQLHRNLHAAAYFLNPALQYSGTCEFNTSEVRRGLKEVIKRL------EPNLEVQA-----------KAMNEINTFVNKIGEFGSALAIKAVAASLPAEWWNMYGEEAPNLRNIAIKVLSQTCTSSGCERNWS 633          
BLAST of mRNA_H-elongata_contig16647.4173.1 vs. uniprot
Match: UPI0010A2AF77 (uncharacterized protein LOC114712623 n=3 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A2AF77)

HSP 1 Score: 75.9 bits (185), Expect = 1.110e-11
Identity = 84/329 (25.53%), Postives = 139/329 (42.25%), Query Frame = 1
Query:   19 CAAHAVDLLLKDFGNLDFFADTLKRINKVVKFVKNHHGTSAIHESHTNLR-LITPCATRFTTNVIV---------AMRMLKASVSSVSDYIRTATVASVRAAGREVVSEISAGDALVGEFWFEVNVFVQLMEPLSALLRMGDGES---VTYAAEGEDWKDLDISTRMVAMK---EKAAKRLNYVWN-----PMMSATFSLDPEYRNVNLLNTRNGQILKDLNTMFMRLLISHGNDPVAAISAAEDEPEGGPVRKA----GSQFTRFKSGKWHGADLLGYAKSMA--------PTDWWETYGVGMRELAELTVKVTSKVPASAGAECNWS 906
            CAAH +DL+L+D G L  F +T+    K+  F+  H     ++  ++  R L  P  TRF T  +          A+R + AS   VS    +      ++ G++V   I  GD+    FW  +   ++ + PL  +LR+ DG+S   + Y  E  D    +I+      +   +K  K ++  WN     P+ +A + L+P++      N  + ++   L     R++                     P RK       Q   FKS K     L G  +SMA        P  WWE+YG   +EL ++ +++ S   ++ G E NWS
Sbjct:  138 CAAHCLDLVLEDIGQLPVFYNTITNAKKITTFIYRHTWVLNLYRKYSKGRELARPAVTRFATAYLTLSCIFRQKNALRTMFASDDWVSGSFAS------KSEGKQVADMIF-GDS---RFWSSIKYCLKCVSPLVKVLRLVDGDSKPAMPYIYEAMDRAKEEIADNFEKKESRYKKIWKIIDTRWNLQLHRPLHAAAYFLNPKFHYDEKFNA-DQEVYFGLYETIERMI---------------------PDRKTRFLVDQQLEAFKSAK----GLFG--RSMAIDTRNKKQPALWWESYGGEGKELQKIAMRILSLTCSATGCERNWS 428          
BLAST of mRNA_H-elongata_contig16647.4173.1 vs. uniprot
Match: UPI000511298E (uncharacterized protein LOC103958368 isoform X1 n=3 Tax=Maleae TaxID=721813 RepID=UPI000511298E)

HSP 1 Score: 75.1 bits (183), Expect = 2.310e-11
Identity = 83/319 (26.02%), Postives = 131/319 (41.07%), Query Frame = 1
Query:   16 KCAAHAVDLLLKDFGNLDFFADTLKRINKVVKFVKNHHGTSAIHESHTN-LRLITPCATRFTTNVIVAMRMLKASVSSVSDYIRTATVASVRAAGREVVSEISAGDALVG-EFWFEVNVFVQLMEPLSALLRMGDGESVTYAAEGEDWKDLDISTRMVAMKEKAAKRLNYV--------------WN-----PMMSATFSLDPEYR-NVNLLNTRNGQILKDLNTMFMRLLISHGNDPVAAISAAEDEPEGGPVRKAGSQFTRFKSGKWHGADLLGYAKSMAPTDWWETYGVGMRELAELTVKVTSKVPASAGAECNWS 906
            +CAAH +DL LKD   + +F DTLK    V K++  H    A+    TN   ++ P  TRF T+ +    + K   + V+ +       S  A  RE  ++++    +   EFW  V+  ++ + PL  +LR  D E     A G  ++ +D+      +KEK A  LN V              WN     P+ +A + L+P++R   N  NT   +I   L     R+L +      A I     +   G      +  TR               K   P  WW+ +G    EL    ++V     +++G E NWS
Sbjct:  321 QCAAHCIDLTLKDIAKMKWFDDTLKHAKCVTKYLYGHQWVLALMRKFTNNTEILRPAVTRFATSFLTLQILQKQKENLVALFSSQKWSESTYAKSRE--AKLAKYYVIHDHEFWGRVSFCIRGVLPLVCVLREVDSEE--RHAMGFMYELIDV------VKEKIANNLNKVEKKYMPIWKKIDHRWNDQLTQPLYAAGYYLNPQFRYEDNFSNTE--EIRNGLFACMDRMLGNSKEREDADIQLDLYDRRFGDFADPMAMKTR---------------KRRTPLGWWQRFGNRTPELMMFAIRVLGLTCSASGCERNWS 612          
BLAST of mRNA_H-elongata_contig16647.4173.1 vs. uniprot
Match: UPI0010A2CC46 (uncharacterized protein LOC114730731 n=2 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A2CC46)

HSP 1 Score: 73.2 bits (178), Expect = 7.380e-11
Identity = 84/308 (27.27%), Postives = 139/308 (45.13%), Query Frame = 1
Query:   19 CAAHAVDLLLKDFGNLDFFADTLKRINKVVKFVKNHHG-TSAIHESHTNLRLITPCATRFTTNVIV--AMRMLKASVSS-VSDYIRTATVASVRAAGREVVSEISAGDALVGEFWFEVNVFVQLMEPLSALLRMGDGE---SVTYAAEGEDWKDLDISTRMVAMKEKAAKRLNYVWNPMMSATFSLDPEYRNVNLLNTR---NGQILKDLNTMFMRLLISHGNDPVAAISAAEDEPEGGPVRKAGSQFTRFKSGK--WHGADLLGYAKSMAPTDWWETYGVGMRELAELTVKVTSKVPASAGAECNWS 906
            CAAH ++L+LKDF ++   +D   + +K+  F  NH    S + +  +   ++ P ATRF T  I   ++ M K ++ + V D        S   AG+   + I     L   FW +    V+++ PL  LLR+ D +   S+ Y  EG       +    VA+KE   KR   ++ P  S   +    +   NL  T    N  I+ D +      L+    D     S ++++ +G  V K   Q T ++ GK  +        A+ + P +WW  YG  + EL  + +++ S+  AS+G E NWS
Sbjct:   65 CAAHCLNLVLKDFSSMPHVSDLASKASKITIFAYNHMVFLSWLRKRSSWKEIVRPGATRFATTFITLHSIYMHKNNLQALVVDKHFVDHKLSRTEAGKNFSALI-----LDNRFWNDCYQVVKIVSPLIKLLRIVDSDEKPSLPYVYEG-------MRRAKVAIKEMF-KRNKELYKPYTSIIQARWDRHLKTNLHATSYLLNSTIIYDPDCPSKSKLMMALID---VESYSDEDVDGFLVMK---QATTYREGKESFSRPSCQKAAQKLDPYEWWTYYGCSVPELQRVAMRILSQTSASSGCERNWS 353          
BLAST of mRNA_H-elongata_contig16647.4173.1 vs. uniprot
Match: A0A843V1P5_COLES (BED-type domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843V1P5_COLES)

HSP 1 Score: 73.6 bits (179), Expect = 8.050e-11
Identity = 80/312 (25.64%), Postives = 119/312 (38.14%), Query Frame = 1
Query:   19 CAAHAVDLLLKDFGNLDFFADTLKRINKVVKFVKNHHGTSAIHESHTNLRLITPCATRFTTNVIVAMRMLKASVSSVSDYIRTATVASVRAAGREVVSEISAGDALVGEFWFEVNVFVQLMEPLSALLRMGDGE-----SVTYAA-EGEDWKDLDISTRMVAMKEKAAKRLNYVWNPMMS-----ATFSLDPEYRNVNLLNTRNGQILKDLNTMFMRLLISHGNDPVAAISAAEDEPEGGPVRKAGSQFTRFKS-----GKWHGADLLGYAKSMAPTDWWETYGVGMRELAELTVKVTSKVPASAGAECNWS 906
            CAAH VDL+LK+ G L      ++   K+ +++ NHH   A     T   L+ P  TRF TN I    +LK     +    RT        AG     ++  G      FW  V   VQ+++PL  +LR+ DG+      + YA  E    K  D+S R   +     +     W+  MS     A + L P Y                         +S+ +  +AA                   FTR KS     G +     +     +   DWW  +G     L ++ VK+ S+  +S+G E NWS
Sbjct:  369 CAAHCVDLMLKEIGTLRPVKTVVEAGQKITRYIYNHHVVLAWMRESTGGELLRPAITRFATNFIALQSLLKHK-DGLKRMFRTDRWMQSTFAGTADGKDVE-GIVCNANFWDRVFKLVQIIKPLYEVLRVVDGDRRPSIGLVYAKIEAVKKKIHDVSPRYAHLVLDVVEDR---WDRQMSRDLHMAAYYLHPTYH--------------------YAFELSYEDHLIAA-------------------FTRMKSFREGVGSFAEPSAVAGRDRIDGADWWFNFGHSTPILRKIAVKILSQTSSSSGCERNWS 636          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16647.4173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001244D6232.130e-1327.01uncharacterized protein LOC115964702 n=1 Tax=Querc... [more]
A0A843VI85_COLES9.890e-1325.87BED-type domain-containing protein n=1 Tax=Colocas... [more]
A0A151TGM2_CAJCA9.910e-1324.53Uncharacterized protein n=2 Tax=Cajanus cajan TaxI... [more]
UPI0010A3540F2.000e-1225.30uncharacterized protein LOC114760313 n=3 Tax=Proso... [more]
UPI00098E0C6B2.530e-1224.20uncharacterized protein LOC109841094 n=1 Tax=Aspar... [more]
A0A6P6W3Z1_COFAR4.270e-1225.32uncharacterized protein LOC113729109 n=3 Tax=Coffe... [more]
UPI0010A2AF771.110e-1125.53uncharacterized protein LOC114712623 n=3 Tax=Proso... [more]
UPI000511298E2.310e-1126.02uncharacterized protein LOC103958368 isoform X1 n=... [more]
UPI0010A2CC467.380e-1127.27uncharacterized protein LOC114730731 n=2 Tax=Proso... [more]
A0A843V1P5_COLES8.050e-1125.64BED-type domain-containing protein n=1 Tax=Colocas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16647contigH-elongata_contig16647:5844..7052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score80.9
Seed ortholog evalue1.1e-12
Seed eggNOG ortholog225117.XP_009368442.1
EggNOG free text desc.source UniProtKB
EggNOG OGs2C7QK@1,2QUNQ@2759,37QB2@33090,3GCE5@35493
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size906
Cds size903
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16647.4173.1prot_H-elongata_contig16647.4173.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16647 5844..7049 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929974.3084896-CDS-H-elongata_contig16647:5843..63321622929974.3084896-CDS-H-elongata_contig16647:5843..6332Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16647 5844..6332 -
1691679230.6453156-CDS-H-elongata_contig16647:5843..63321691679230.6453156-CDS-H-elongata_contig16647:5843..6332Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16647 5844..6332 -
1622929974.3255854-CDS-H-elongata_contig16647:6410..65771622929974.3255854-CDS-H-elongata_contig16647:6410..6577Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16647 6411..6577 -
1691679230.6545396-CDS-H-elongata_contig16647:6410..65771691679230.6545396-CDS-H-elongata_contig16647:6410..6577Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16647 6411..6577 -
1622929974.3397267-CDS-H-elongata_contig16647:6802..70491622929974.3397267-CDS-H-elongata_contig16647:6802..7049Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16647 6803..7049 -
1691679230.6619995-CDS-H-elongata_contig16647:6802..70491691679230.6619995-CDS-H-elongata_contig16647:6802..7049Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16647 6803..7049 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929974.355093-UTR-H-elongata_contig16647:7049..70521622929974.355093-UTR-H-elongata_contig16647:7049..7052Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16647 7050..7052 -
1691679230.6758595-UTR-H-elongata_contig16647:7049..70521691679230.6758595-UTR-H-elongata_contig16647:7049..7052Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16647 7050..7052 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16647.4173.1

>prot_H-elongata_contig16647.4173.1 ID=prot_H-elongata_contig16647.4173.1|Name=mRNA_H-elongata_contig16647.4173.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=301bp
MTGMKCAAHAVDLLLKDFGNLDFFADTLKRINKVVKFVKNHHGTSAIHES
HTNLRLITPCATRFTTNVIVAMRMLKASVSSVSDYIRTATVASVRAAGRE
VVSEISAGDALVGEFWFEVNVFVQLMEPLSALLRMGDGESVTYAAEGEDW
KDLDISTRMVAMKEKAAKRLNYVWNPMMSATFSLDPEYRNVNLLNTRNGQ
ILKDLNTMFMRLLISHGNDPVAAISAAEDEPEGGPVRKAGSQFTRFKSGK
WHGADLLGYAKSMAPTDWWETYGVGMRELAELTVKVTSKVPASAGAECNW
S
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mRNA from alignment at H-elongata_contig16647:5844..7052-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16647.4173.1 ID=mRNA_H-elongata_contig16647.4173.1|Name=mRNA_H-elongata_contig16647.4173.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1209bp|location=Sequence derived from alignment at H-elongata_contig16647:5844..7052- (Himanthalia elongata Himel1 dioecious)
AGAATGACAGGGATGAAGTGCGCAGCTCACGCTGTGGATTTGCTGCTCAA GGATTTCGGGAACCTCGACTTCTTCGCCGACACCCTCAAGCGCATCAACA AGGTCGTGAAGTTCGTAAAAAACCACCACGGCACCAGCGCCATCCACGAG AGCCACACTAACCTCCGGTTGATCACCCCCTGCGCCACACGCTTCACGAC CAACGTCATCGTGGCCATGCGCATGCTGAAGGCAAGTGTTTCAAGTGTTT GTTTTATAATTTGAAAAGACGAGAGTAAGGCAGGCAGTTGTTAGTTTTTG TTTTTGTTTGTTGTTTTGTGGTTCAAAACATGACTGCAACTCTTTATTTT GTTTTATATTATCCTGCCTACTTATGTTTGCCGCTGCCGCTTCTGTTCTT TACGTGTTATGCGCATGAATACAAATGCCCAGGTGAAGGTAGCTCTGAAG ACCTTCGCATGTGACCCGCGTACAGCAGACTACATCAGGACTGCGACGGT GGCCTCCGTTCGCGCGGCTGGCCGAGAAGTGGTGTCCGAGATCTCCGCAG GCGACGCGCTGGTGGGCGAATTCTGGTTCGAGGTGAACGTCTTCGTGCAG CTGATGGAACCCCTCTCTGCGCTCCTCCGGATGGGGGACGGGGTGCTACC GTGCATGTCCAAGTTCCTCAACGGCTTCATCAAGATCCCGGCACGGTAGG ATCTCATCTTAGAGCTACAGGAGTCGGTGACCTACGCGGCGGAGGGGGAA GACTGGAAGGACCTCGACATTTCTACGCGCATGGTTGCGATGAAAGAGAA GGCCGCCAAACGTCTCAACTACGTCTGGAACCCCATGATGTCCGCTACCT TTTCCCTTGACCCCGAGTACCGCAACGTCAATCTGCTCAACACCAGGAAC GGCCAGATCTTGAAGGACCTCAACACCATGTTCATGCGCCTGCTCATTTC CCACGGCAACGACCCCGTCGCCGCTATCTCGGCGGCGGAGGACGAACCTG AGGGTGGCCCGGTGAGAAAGGCAGGGAGCCAGTTCACCCGTTTCAAGTCC GGGAAGTGGCATGGGGCGGACCTACTGGGGTACGCCAAGTCGATGGCCCC CACTGACTGGTGGGAGACGTACGGCGTCGGCATGCGAGAGCTGGCGGAGT TGACCGTGAAGGTGACGTCCAAAGTACCTGCTTCGGCGGGGGCGGAGTGC AACTGGAGC
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Coding sequence (CDS) from alignment at H-elongata_contig16647:5844..7052-

>mRNA_H-elongata_contig16647.4173.1 ID=mRNA_H-elongata_contig16647.4173.1|Name=mRNA_H-elongata_contig16647.4173.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1806bp|location=Sequence derived from alignment at H-elongata_contig16647:5844..7052- (Himanthalia elongata Himel1 dioecious)
ATGACAGGGATGAAGTGCGCAGCTCACGCTGTGGATTTGCTGCTCAAGGA
TTTCGGGAACCTCGACTTCTTCGCCGACACCCTCAAGCGCATCAACAAGG
TCGTGAAGTTCGTAAAAAACCACCACGGCACCAGCGCCATCCACGAGAGC
CACACTAACCTCCGGTTGATCACCCCCTGCGCCACACGCTTCACGACCAA
CGTCATCGTGGCCATGCGCATGCTGAAGGCAAGTGTTTCAAGTGTTTATG
ACAGGGATGAAGTGCGCAGCTCACGCTGTGGATTTGCTGCTCAAGGATTT
CGGGAACCTCGACTTCTTCGCCGACACCCTCAAGCGCATCAACAAGGTCG
TGAAGTTCGTAAAAAACCACCACGGCACCAGCGCCATCCACGAGAGCCAC
ACTAACCTCCGGTTGATCACCCCCTGCGCCACACGCTTCACGACCAACGT
CATCGTGGCCATGCGCATGCTGAAGGCAAGTGTTTCAAGTGTTTCAGACT
ACATCAGGACTGCGACGGTGGCCTCCGTTCGCGCGGCTGGCCGAGAAGTG
GTGTCCGAGATCTCCGCAGGCGACGCGCTGGTGGGCGAATTCTGGTTCGA
GGTGAACGTCTTCGTGCAGCTGATGGAACCCCTCTCTGCGCTCCTCCGGA
TGGGGGACGGGCAGACTACATCAGGACTGCGACGGTGGCCTCCGTTCGCG
CGGCTGGCCGAGAAGTGGTGTCCGAGATCTCCGCAGGCGACGCGCTGGTG
GGCGAATTCTGGTTCGAGGTGAACGTCTTCGTGCAGCTGATGGAACCCCT
CTCTGCGCTCCTCCGGATGGGGGACGGGGAGTCGGTGACCTACGCGGCGG
AGGGGGAAGACTGGAAGGACCTCGACATTTCTACGCGCATGGTTGCGATG
AAAGAGAAGGCCGCCAAACGTCTCAACTACGTCTGGAACCCCATGATGTC
CGCTACCTTTTCCCTTGACCCCGAGTACCGCAACGTCAATCTGCTCAACA
CCAGGAACGGCCAGATCTTGAAGGACCTCAACACCATGTTCATGCGCCTG
CTCATTTCCCACGGCAACGACCCCGTCGCCGCTATCTCGGCGGCGGAGGA
CGAACCTGAGGGTGGCCCGGTGAGAAAGGCAGGGAGCCAGTTCACCCGTT
TCAAGTCCGGGAAGTGGCATGGGGCGGACCTACTGGGGTACGCCAAGTCG
ATGGCCCCCACTGACTGGTGGGAGACGTACGGCGTCGGCATGCGAGAGCT
GGCGGAGTTGACCGTGAAGGTGACGTCCAAAGTACCTGCTTCGGCGGGGG
CGGAGTGCAACTGGAGCGAGTCGGTGACCTACGCGGCGGAGGGGGAAGAC
TGGAAGGACCTCGACATTTCTACGCGCATGGTTGCGATGAAAGAGAAGGC
CGCCAAACGTCTCAACTACGTCTGGAACCCCATGATGTCCGCTACCTTTT
CCCTTGACCCCGAGTACCGCAACGTCAATCTGCTCAACACCAGGAACGGC
CAGATCTTGAAGGACCTCAACACCATGTTCATGCGCCTGCTCATTTCCCA
CGGCAACGACCCCGTCGCCGCTATCTCGGCGGCGGAGGACGAACCTGAGG
GTGGCCCGGTGAGAAAGGCAGGGAGCCAGTTCACCCGTTTCAAGTCCGGG
AAGTGGCATGGGGCGGACCTACTGGGGTACGCCAAGTCGATGGCCCCCAC
TGACTGGTGGGAGACGTACGGCGTCGGCATGCGAGAGCTGGCGGAGTTGA
CCGTGAAGGTGACGTCCAAAGTACCTGCTTCGGCGGGGGCGGAGTGCAAC
TGGAGC
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