mRNA_H-elongata_contig165822.4146.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig165822.4146.1
Unique NamemRNA_H-elongata_contig165822.4146.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig165822.4146.1 vs. uniprot
Match: A0A6H5KQ50_9PHAE (Methyltransf_25 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ50_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 2.550e-26
Identity = 49/64 (76.56%), Postives = 57/64 (89.06%), Query Frame = 1
Query:    1 WSPPLDGPALDFGCGTGSLTLALRDGLGQRVTGVDTSRAMLEQFEKKAEGQGITTVAVEASYLG 192
            W+PPLDGP LDFGCGTG LT+ALRD LG+ VTGVDTSRAMLEQF++KAEG+G+TTVAVE +  G
Sbjct:   48 WTPPLDGPTLDFGCGTGCLTMALRDDLGESVTGVDTSRAMLEQFDRKAEGRGVTTVAVELTGPG 111          
BLAST of mRNA_H-elongata_contig165822.4146.1 vs. uniprot
Match: A0A1A9IT14_9ACTN (SAM-dependent methyltransferase n=4 Tax=unclassified Streptomyces TaxID=2593676 RepID=A0A1A9IT14_9ACTN)

HSP 1 Score: 55.5 bits (132), Expect = 1.070e-7
Identity = 30/52 (57.69%), Postives = 33/52 (63.46%), Query Frame = 1
Query:    1 WSPPLDGPALDFGCGTGSLTLALRDGLGQRVTGVDTSRAMLEQFEKKAEGQG 156
            W PP     LD GCGTGSL+L L  G G RVTGVD+S AMLE+   K  G G
Sbjct:   34 WLPPRPAAILDLGCGTGSLSL-LAAGQGHRVTGVDSSPAMLERARAKLAGAG 84          
BLAST of mRNA_H-elongata_contig165822.4146.1 vs. uniprot
Match: A0A1V5QRK6_9BACT (Trans-aconitate 2-methyltransferase n=1 Tax=Acidobacteria bacterium ADurb.Bin340 TaxID=1852787 RepID=A0A1V5QRK6_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 2.230e-7
Identity = 33/64 (51.56%), Postives = 41/64 (64.06%), Query Frame = 1
Query:   10 PLDGP--ALDFGCGTGSLTLALRDGLGQRVTGVDTSRAMLEQFEKK---AEGQGITTVAVEASY 186
            PL G   ALD+GCGTG LTLALR  +G R+TGVDTS AML + E K       G+  V ++A +
Sbjct:   33 PLSGTDAALDYGCGTGLLTLALRPAVG-RITGVDTSPAMLSRLEAKLAEVPDAGVEAVLLDAEH 95          
BLAST of mRNA_H-elongata_contig165822.4146.1 vs. uniprot
Match: A0A2N2GHF4_9DELT (SAM-dependent methyltransferase n=1 Tax=Deltaproteobacteria bacterium HGW-Deltaproteobacteria-6 TaxID=2013756 RepID=A0A2N2GHF4_9DELT)

HSP 1 Score: 53.1 bits (126), Expect = 9.190e-7
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 1
Query:   28 LDFGCGTGSLTLALRDGLGQRVTGVDTSRAMLEQFEKKAEGQGITTVAVEASYL 189
            LDFGCGTG L LAL+  L   +TGVD+SR ML+ F +K   +G+T V+  A YL
Sbjct:   45 LDFGCGTGLLALALQP-LVHAITGVDSSRGMLDVFHRKISDRGLTNVS--AQYL 95          
BLAST of mRNA_H-elongata_contig165822.4146.1 vs. uniprot
Match: A0A3A2IYZ4_9GAMM (Class I SAM-dependent methyltransferase n=1 Tax=Methylococcales bacterium TaxID=2304002 RepID=A0A3A2IYZ4_9GAMM)

HSP 1 Score: 52.0 bits (123), Expect = 2.350e-6
Identity = 31/59 (52.54%), Postives = 36/59 (61.02%), Query Frame = 1
Query:   16 DGPALDFGCGTGSLTLALRDGLGQRVTGVDTSRAMLEQFEKKAEGQGITTVAVEASYLG 192
            D   LDFGCGTG +TLAL   +G  +TG DTS  MLE   +KA  QGI   AV   +LG
Sbjct:   40 DQEVLDFGCGTGLVTLALGPVVGS-ITGADTSTGMLETIAEKARSQGI---AVPLRHLG 94          
BLAST of mRNA_H-elongata_contig165822.4146.1 vs. uniprot
Match: A0A832B7A1_9BACT (Class I SAM-dependent methyltransferase n=1 Tax=Chthonomonadetes bacterium TaxID=2282152 RepID=A0A832B7A1_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 6.750e-6
Identity = 24/47 (51.06%), Postives = 35/47 (74.47%), Query Frame = 1
Query:   28 LDFGCGTGSLTLALRDGLGQRVTGVDTSRAMLEQFEKKAEGQGITTV 168
            +D+GCGTG +TL L+ GL   +TG+D+S AML + E+KA+ QG+  V
Sbjct:   43 VDYGCGTGLVTLELQ-GLAAEITGIDSSPAMLAELERKAQDQGLGRV 88          
BLAST of mRNA_H-elongata_contig165822.4146.1 vs. uniprot
Match: A0A7C9JAK3_9DELT (Methyltransferase domain-containing protein n=1 Tax=Solidesulfovibrio aerotolerans TaxID=295255 RepID=A0A7C9JAK3_9DELT)

HSP 1 Score: 50.8 bits (120), Expect = 6.810e-6
Identity = 28/55 (50.91%), Postives = 36/55 (65.45%), Query Frame = 1
Query:   25 ALDFGCGTGSLTLALRDGLGQRVTGVDTSRAMLEQFEKKAEGQGITTVAVEASYL 189
            ALDFGCGTG LTL L     ++VTG+DTS  ML +   K E  G+T VA+ ++ L
Sbjct:   45 ALDFGCGTGLLTLKLA-AQAEQVTGLDTSAGMLAELATKIERAGLTNVAMLSADL 98          
BLAST of mRNA_H-elongata_contig165822.4146.1 vs. uniprot
Match: A0A2I0D150_9EURY (SAM-dependent methyltransferase n=1 Tax=Methanoregula sp. TaxID=2052170 RepID=A0A2I0D150_9EURY)

HSP 1 Score: 50.8 bits (120), Expect = 7.160e-6
Identity = 28/62 (45.16%), Postives = 38/62 (61.29%), Query Frame = 1
Query:    4 SPPLDGPALDFGCGTGSLTLALRDGLGQRVTGVDTSRAMLEQFEKKAEGQGITTVAVEASYL 189
            +P +D   LDFGCGTG LTL  +  L + VTG+D+S+ ML   E+K   QG+T V+     L
Sbjct:   45 TPEMD--VLDFGCGTGLLTLQFQP-LARSVTGIDSSKGMLAVLEEKIREQGLTNVSARCIDL 103          
BLAST of mRNA_H-elongata_contig165822.4146.1 vs. uniprot
Match: A0A0B1U1X4_9DELT (Pedicted SAM-dependent methyltransferase n=3 Tax=unclassified Desulfovibrio TaxID=2593640 RepID=A0A0B1U1X4_9DELT)

HSP 1 Score: 50.4 bits (119), Expect = 9.450e-6
Identity = 28/50 (56.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query:   25 ALDFGCGTGSLTLALRDGLGQRVTGVDTSRAMLEQFEKKAEGQGITTVAV 174
            ALDFGCGTG LTL L +  GQ VTG+DTS  ML +   K E  G+  V V
Sbjct:   45 ALDFGCGTGLLTLELAERAGQ-VTGLDTSDGMLAELSAKIERAGLGNVGV 93          
BLAST of mRNA_H-elongata_contig165822.4146.1 vs. uniprot
Match: A0A6S6M2Y5_9DELT (Methyltransferase n=2 Tax=Citrifermentans TaxID=2883512 RepID=A0A6S6M2Y5_9DELT)

HSP 1 Score: 50.1 bits (118), Expect = 1.290e-5
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 1
Query:   10 PLDG--PALDFGCGTGSLTLALRDGLGQRVTGVDTSRAMLEQFEKKAEGQGITTVAVE 177
            PLDG   ALD+GCG+G +TL L+  +G R+TG D+S+ MLE  E+K E   I  V ++
Sbjct:   39 PLDGRMEALDYGCGSGLVTLGLQPLVG-RITGADSSKGMLEVLERKLEQGKIENVTLQ 95          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165822.4146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQ50_9PHAE2.550e-2676.56Methyltransf_25 domain-containing protein n=1 Tax=... [more]
A0A1A9IT14_9ACTN1.070e-757.69SAM-dependent methyltransferase n=4 Tax=unclassifi... [more]
A0A1V5QRK6_9BACT2.230e-751.56Trans-aconitate 2-methyltransferase n=1 Tax=Acidob... [more]
A0A2N2GHF4_9DELT9.190e-753.70SAM-dependent methyltransferase n=1 Tax=Deltaprote... [more]
A0A3A2IYZ4_9GAMM2.350e-652.54Class I SAM-dependent methyltransferase n=1 Tax=Me... [more]
A0A832B7A1_9BACT6.750e-651.06Class I SAM-dependent methyltransferase n=1 Tax=Ch... [more]
A0A7C9JAK3_9DELT6.810e-650.91Methyltransferase domain-containing protein n=1 Ta... [more]
A0A2I0D150_9EURY7.160e-645.16SAM-dependent methyltransferase n=1 Tax=Methanoreg... [more]
A0A0B1U1X4_9DELT9.450e-656.00Pedicted SAM-dependent methyltransferase n=3 Tax=u... [more]
A0A6S6M2Y5_9DELT1.290e-548.28Methyltransferase n=2 Tax=Citrifermentans TaxID=28... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig165822contigH-elongata_contig165822:125..319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929970.7088118-CDS-H-elongata_contig165822:124..3191622929970.7088118-CDS-H-elongata_contig165822:124..319Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165822 125..319 -
1691679229.057521-CDS-H-elongata_contig165822:124..3191691679229.057521-CDS-H-elongata_contig165822:124..319Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165822 125..319 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig165822.4146.1prot_H-elongata_contig165822.4146.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig165822 125..319 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig165822.4146.1

>prot_H-elongata_contig165822.4146.1 ID=prot_H-elongata_contig165822.4146.1|Name=mRNA_H-elongata_contig165822.4146.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
WSPPLDGPALDFGCGTGSLTLALRDGLGQRVTGVDTSRAMLEQFEKKAEG
QGITTVAVEASYLG*
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mRNA from alignment at H-elongata_contig165822:125..319-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig165822.4146.1 ID=mRNA_H-elongata_contig165822.4146.1|Name=mRNA_H-elongata_contig165822.4146.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig165822:125..319- (Himanthalia elongata Himel1 dioecious)
TGGAGCCCCCCCCTGGATGGACCGGCTCTTGACTTTGGCTGCGGTACGGG ATCCCTCACGCTGGCTCTCCGGGACGGCCTGGGCCAGAGGGTGACGGGCG TGGACACCTCTCGGGCGATGTTGGAGCAGTTCGAGAAGAAGGCGGAAGGA CAAGGGATCACCACCGTGGCTGTCGAGGCGAGTTATTTGGGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig165822:125..319-

>mRNA_H-elongata_contig165822.4146.1 ID=mRNA_H-elongata_contig165822.4146.1|Name=mRNA_H-elongata_contig165822.4146.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig165822:125..319- (Himanthalia elongata Himel1 dioecious)
TGGAGCCCCCCCCTGGATGGACCGGCTCTTGACTTTGGCTGCGGTACGGG
ATCCCTCACGCTGGCTCTCCGGGACGGCCTGGGCCAGAGGGTGACGGGCG
TGGACACCTCTCGGGCGATGTTGGAGCAGTTCGAGAAGAAGGCGGAAGGA
CAAGGGATCACCACCGTGGCTGTCGAGGCGAGTTATTTGGGATGATGGAG
CCCCCCCCTGGATGGACCGGCTCTTGACTTTGGCTGCGGTACGGGATCCC
TCACGCTGGCTCTCCGGGACGGCCTGGGCCAGAGGGTGACGGGCGTGGAC
ACCTCTCGGGCGATGTTGGAGCAGTTCGAGAAGAAGGCGGAAGGACAAGG
GATCACCACCGTGGCTGTCGAGGCGAGTTATTTGGGATGA
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