mRNA_H-elongata_contig16561.4133.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16561.4133.1
Unique NamemRNA_H-elongata_contig16561.4133.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig16561.4133.1 vs. uniprot
Match: D7G9C3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9C3_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 1.300e-51
Identity = 99/180 (55.00%), Postives = 114/180 (63.33%), Query Frame = 1
Query:    1 IPKLILRAEGELRIEFSTGHLQTIWLRGEVLRPVITVAPATHSFGTIHTERKGNATLFVGNPTVVDAEWSLSHVPAPPPKQRI-----------------SSPKRVLN-SYVA---------------------------IVVDDPSVFDFGERNGVAAGAKLPLGSSAACLPEDWNRLD 405
            IP+L+LR  GEL I F TGH+Q I+LRGEVLRP+ITVAPATHSFGTIHTER+GNATLF+GNPT  DAEWSL H+PAPPPK+R+                 S+P R  + +YV                            +VVDDPSVF FGE  GV  G KLPL SSAACLPEDWNR +
Sbjct: 1085 IPRLVLRTTGELTIAFCTGHVQRIFLRGEVLRPMITVAPATHSFGTIHTERRGNATLFLGNPTFADAEWSLVHIPAPPPKKRLIHSNNADKATATGTTPTSNPARAASGAYVKGRHTGKPGGTDGSGSSGCSSVAGLFNPLVVDDPSVFVFGEEGGVLTGVKLPLKSSAACLPEDWNRFE 1264          
BLAST of mRNA_H-elongata_contig16561.4133.1 vs. uniprot
Match: A0A7S2CR52_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CR52_9STRA)

HSP 1 Score: 118 bits (295), Expect = 9.820e-29
Identity = 58/127 (45.67%), Postives = 77/127 (60.63%), Query Frame = 1
Query:   25 EGELRIEFSTGHLQTIWLRGEVLRPVITVAPATHSFGTIHTERKGNATLFVGNPTVVDAEWSLSHVPAPPPKQRISSPKRVLNSYVAIVVDDPSVFDFGERNGVAAGAKLPLGSSAACLPEDWNRLD 405
            EG L + ++TG LQTI L G+V+RP+I  AP+ H +G +HTE K   T+FV NPT V+A W + HVP  PPK  I + +  ++       D+P VF F E  G   G  LPL S+  CLP+D NR D
Sbjct:  226 EGVLNLNYATGQLQTIKLVGQVMRPMIVCAPSEHEYGIVHTEGKAQITIFVSNPTEVEASWKIRHVPVQPPKVSIIASE--MDKPKPRPRDEPDVFSFSEYGGSQKGPSLPLESAGDCLPKDENRSD 350          
BLAST of mRNA_H-elongata_contig16561.4133.1 vs. uniprot
Match: A0A835YLF8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLF8_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.800e-25
Identity = 61/137 (44.53%), Postives = 71/137 (51.82%), Query Frame = 1
Query:    4 PKLILRAEGELRIEFSTGHL-----QTIWLRGEVLRPVITVAPATHSFGTIHTERKGNATLFVGNPTVVDAEWSLSHVPAPPPKQRISSPKRVLNSYVAIVVDDPSVFDFGERNGVAAGAKLPLGSSAACLPEDWNR 399
            P L   AEG L +            Q   L   V+RP +T AP  H +GT+H E    ATL++ NPT VDA WSL H PAPPP    +  +    +     VDDPSVF F E  G   G  LPLGSSAA LP D NR
Sbjct: 2041 PLLRAAAEGALTVAXXXXXXXAHARQAFALDAVVVRPALTAAPPRHDYGTVHVEAACGATLYLANPTAVDARWSLRHAPAPPPLMAHARRRDGSGAGDRACVDDPSVFSFSESGGTVRGPSLPLGSSAARLPTDGNR 2177          
BLAST of mRNA_H-elongata_contig16561.4133.1 vs. uniprot
Match: F0YJY4_AURAN (MSP domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJY4_AURAN)

HSP 1 Score: 105 bits (261), Expect = 1.380e-23
Identity = 57/133 (42.86%), Postives = 74/133 (55.64%), Query Frame = 1
Query:    7 KLILRAEGELRIEFSTGHLQTIWLRGEVLRPVITVAPATHSFGTIHTERKGNATLFVGNPTVVDAEWSLSHVP-APPPKQRISSPKRVLNSYVAIVVDDPSVFDFGERNGVAAGAKLPLGSSAACLPEDWNRL 402
            KL    +GEL + FSTG  Q + L+G V+RP +  +P  H F  + T+     +LF+ NPT VD EW L HVP        I      L+S     VDDPSVFDF +      G  LPL S+AAC+P+D+NRL
Sbjct: 2150 KLKYDYDGELIVRFSTGQEQRVALQGTVVRPALVASPPAHDFKVVRTDGSSCLSLFLSNPTEVDIEWQLRHVPRGDRVSDGIDGDNAPLDS-----VDDPSVFDFSDVTAHMTGPSLPLKSAAACVPKDFNRL 2277          
BLAST of mRNA_H-elongata_contig16561.4133.1 vs. uniprot
Match: A0A6G0X5N2_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X5N2_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.800e-18
Identity = 46/119 (38.66%), Postives = 69/119 (57.98%), Query Frame = 1
Query:   28 GELRIEFSTGHLQTIWLRGEVLRPVITVAPATHSFGTIHTERKGNATLFVGNPTVVDAEWSLSHVPAPPPKQRISSPKRVLNSYVAIVVDDPSVFDFGERNGVAAGAKLPLGSSAACLP 384
            G+L + +S G  QTI L+G VLRP + +AP+   FG +H  +  N T+++ NPT VDA +++ HVP      ++S+          +  DDP+VF    RNGV  G  LPL +S+A +P
Sbjct: 1512 GQLDVRYSQGSTQTIALQGRVLRPRVVLAPSQFKFGRVHCTQSTNVTIYLSNPTEVDARFAVQHVP------QVST----------LTTDDPAVFHMAIRNGVVRGPSLPLYTSSALVP 1614          
BLAST of mRNA_H-elongata_contig16561.4133.1 vs. uniprot
Match: A0A8K1CBX5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBX5_PYTOL)

HSP 1 Score: 87.8 bits (216), Expect = 1.580e-17
Identity = 47/122 (38.52%), Postives = 69/122 (56.56%), Query Frame = 1
Query:   10 LILRAEGELRIEFSTGHLQTIWLRGEVLRPVITVAPATHSFGTIHTERKGNATLFVGNPTVVDAEWSLSHVPAPPPKQRISSPKRVLNSYVAIVVDDPSVFDFGERNGVAAGAKLPLGSSAA 375
            L  R EG L + F+   +Q + L GE+L PVI V+P+ +SFG +H  +  +  L++ NPTVV A +++ HVP P P  R    K+ + ++ A   DDPSVF     +G   G  L L SS +
Sbjct: 1642 LTSRVEGALLVRFTNQSVQRLQLCGEILAPVILVSPSVYSFGHVHLSQTRSVLLYLTNPTVVPASFTIRHVPRPTPLSRAQ--KQEMTTHHAHFEDDPSVFTLAMTSGTLEGPTLSLRSSGS 1761          
BLAST of mRNA_H-elongata_contig16561.4133.1 vs. uniprot
Match: A0A7S3UW56_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UW56_HETAK)

HSP 1 Score: 85.9 bits (211), Expect = 3.690e-17
Identity = 48/134 (35.82%), Postives = 73/134 (54.48%), Query Frame = 1
Query:   10 LILRAEGELRIEFSTGHLQTIWLRGEVLRPVITVAPATHSFGTIHTERKG-NATLFVGNPTVVDAEWSLSHVPAPP-PKQRISSPKRVLNSYVAIVVDDPSVFDFGERNGVAAGAKLPLGSSAACLPEDWNRLD 405
            L+ +  G + + FSTG  Q I L G +LRP++  +P+ + FG       G +  L + NPT V+A W+L HVP+    K R++    ++ +      D P VF+F  + G  AG  +PL ++A CLP D NR D
Sbjct:  163 LMEQVNGSMTVTFSTGCTQQIDLTGNILRPMLVCSPSKYHFGIGMVGGDGVSIYLSISNPTEVEANWNLIHVPSKTFTKSRLAGLGGMVQN-----TDHPDVFEFSTKQGTLAGPTMPLQTAAVCLPTDVNRAD 291          
BLAST of mRNA_H-elongata_contig16561.4133.1 vs. uniprot
Match: A0A1W0A367_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A367_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 5.440e-17
Identity = 46/119 (38.66%), Postives = 60/119 (50.42%), Query Frame = 1
Query:   28 GELRIEFSTGHLQTIWLRGEVLRPVITVAPATHSFGTIHTERKGNATLFVGNPTVVDAEWSLSHVPAPPPKQRISSPKRVLNSYVAIVVDDPSVFDFGERNGVAAGAKLPLGSSAACLP 384
            G L I FS G LQTI L+G +LRP++ +AP+   FG +H E      +++ NPT VDA + + HVP    K                 VDDPSVF      G   G  LPL +S A +P
Sbjct: 1530 GALMIRFSQGTLQTIQLQGRILRPILVIAPSHFKFGLVHCEHSETVKIYLSNPTQVDANFRVHHVPHLGTK----------------TVDDPSVFQLSATTGTLKGPSLPLHTSGALVP 1632          
BLAST of mRNA_H-elongata_contig16561.4133.1 vs. uniprot
Match: A0A7S1CKI7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CKI7_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.430e-10
Identity = 35/97 (36.08%), Postives = 45/97 (46.39%), Query Frame = 1
Query:  127 SFGTIHTERKGNATLFVGNPTVVDAEWSLSHVPAPPPKQRISSPKRVLN-------------------SYVAIVVDDPSVFDFGERNGVAAGAKLPL 360
            +FG  HTE+     +F+ NPT V+AEW + HVPAPPPK R++     L                    +   +  DDP VFDF  R G   G   PL
Sbjct:    1 NFGHCHTEKVKTKEVFLANPTEVEAEWKVVHVPAPPPKPRVTIDVSALGLEGIKGIDLQALSGAAPEGAAKIVEEDDPDVFDFSVRGGTLTGPTAPL 97          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16561.4133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G9C3_ECTSI1.300e-5155.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CR52_9STRA9.820e-2945.67Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835YLF8_9STRA1.800e-2544.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
F0YJY4_AURAN1.380e-2342.86MSP domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A6G0X5N2_9STRA1.800e-1838.66Uncharacterized protein n=3 Tax=Aphanomyces euteic... [more]
A0A8K1CBX5_PYTOL1.580e-1738.52Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S3UW56_HETAK3.690e-1735.82Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1W0A367_9STRA5.440e-1738.66Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A7S1CKI7_9STRA1.430e-1036.08Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16561contigH-elongata_contig16561:4534..5934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.0
Seed ortholog evalue1.1e-44
Seed eggNOG ortholog2880.D7G9C3
Preferred nameDLEC1
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008285,GO:0042127,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0065007
EggNOG free text desc.negative regulation of cell proliferation
EggNOG OGs28IDE@1,2QQQ5@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size405
Cds size405
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16561.4133.1prot_H-elongata_contig16561.4133.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16561 4534..5934 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929969.278896-CDS-H-elongata_contig16561:4533..46611622929969.278896-CDS-H-elongata_contig16561:4533..4661Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16561 4534..4661 -
1691679228.429696-CDS-H-elongata_contig16561:4533..46611691679228.429696-CDS-H-elongata_contig16561:4533..4661Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16561 4534..4661 -
1622929969.294814-CDS-H-elongata_contig16561:4904..50941622929969.294814-CDS-H-elongata_contig16561:4904..5094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16561 4905..5094 -
1691679228.4471245-CDS-H-elongata_contig16561:4904..50941691679228.4471245-CDS-H-elongata_contig16561:4904..5094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16561 4905..5094 -
1622929969.3074887-CDS-H-elongata_contig16561:5847..59341622929969.3074887-CDS-H-elongata_contig16561:5847..5934Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16561 5848..5934 -
1691679228.4573982-CDS-H-elongata_contig16561:5847..59341691679228.4573982-CDS-H-elongata_contig16561:5847..5934Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16561 5848..5934 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16561.4133.1

>prot_H-elongata_contig16561.4133.1 ID=prot_H-elongata_contig16561.4133.1|Name=mRNA_H-elongata_contig16561.4133.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
IPKLILRAEGELRIEFSTGHLQTIWLRGEVLRPVITVAPATHSFGTIHTE
RKGNATLFVGNPTVVDAEWSLSHVPAPPPKQRISSPKRVLNSYVAIVVDD
PSVFDFGERNGVAAGAKLPLGSSAACLPEDWNRLD
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mRNA from alignment at H-elongata_contig16561:4534..5934-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16561.4133.1 ID=mRNA_H-elongata_contig16561.4133.1|Name=mRNA_H-elongata_contig16561.4133.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1401bp|location=Sequence derived from alignment at H-elongata_contig16561:4534..5934- (Himanthalia elongata Himel1 dioecious)
ATTCCGAAGCTGATCCTTCGGGCGGAGGGGGAGCTACGCATAGAGTTCAG CACCGGACACCTGCAGACGATCTGGCTTAGGGGAGAGGTACGGTGCTGCG GACAATTCACCGAAATACCTGCGCAATAATCTTCTGTCGCTTGAGAAGGG TAACAGTTCGCAGAAATGCCCCCATCACAACAACGCATACCCTTAATGAT GCGCGGGAGAAAAGATCGGAAGCCATTCTGATCGACCAGGGTTCCTCGTC AACAATGTTATTTTTGTACATATTTTGTTTCGGCTGTGTAGTACTTCCAT GCTCGCTTTTGTGCGGTATGTTATCCTATATATATTATCTGTCGCTTTTC GGCCGTTATTTTTCAGCGCAACCTTCTATCTGAGACCACTAGGGGTGTTA TTATCATGAGTTCGGCTCGATTCGATCTACGCATTTGAATATCAGCATTA TATATATGTAGTATACACTTAACATTCTAGTGATAGCACAACAGATAGAA AGCCACCCCTCAAAAGAAAATCAGAGCCTTTTATTCCACGATCGTTTAAC GGCGTGACAGCGAAATAAAATCAAGCGATTTGAAAACGGAAACGCGGCAT GTGCTGTTTGTAGGTAGTTTATTTGCGCTGTTTTTCTCATCCCACCGATC TCATTGACGTTTCGGAAGCCCACCTGCGGTAAAGACGCCCCCGTACCAGG TTCCCGAAACATTTCTGGACGTTGTACGTTGGGATGGAGTGGGCCAACTA CCGAAACATCACTCATTCGTCCGATCCAGAACTAGTACGCAGCAGCTGCC TTCCACCCTCGGCACACCCCCACTCTTTTTTCTCCTCCAGGTCTTGCGAC CGGTCATCACAGTGGCCCCAGCGACCCACTCCTTTGGAACCATCCACACC GAGCGCAAAGGAAACGCAACGCTGTTCGTCGGAAACCCCACGGTCGTCGA CGCTGAGTGGTCCTTGTCCCACGTCCCCGCGCCCCCTCCCAAGCAGCGAA TTTCCTCTCCGAAAAGAGTTTTGAACTCTTGTTCTCGTACAGCACTCGAG CGAAGCGAGAAGGGGCGACTGGCTTGTGAACCGAAAGAAGTTCATGAGGA GGCATTCTTGTCAGAGAGGAAGAAAGAGGAGAAGGGGCATTTTCCCCCGC CGGGGAGAGCGCGGGTTGTTCGGCCGAAATCATCTGTTAGGATACCGGGG GCGTTACCGTGGGCGGGGCCTGATGAGGCGATGTCTGCTGAGGTGACTAT GGTCGAGCCAAGGACGACTACAGATGTCGCCATCGTGGTGGATGATCCTT CCGTGTTCGACTTCGGCGAGCGCAACGGCGTGGCGGCTGGGGCGAAGCTT CCGCTGGGGTCCTCCGCGGCGTGTCTGCCCGAAGACTGGAACCGTTTGGA T
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Coding sequence (CDS) from alignment at H-elongata_contig16561:4534..5934-

>mRNA_H-elongata_contig16561.4133.1 ID=mRNA_H-elongata_contig16561.4133.1|Name=mRNA_H-elongata_contig16561.4133.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig16561:4534..5934- (Himanthalia elongata Himel1 dioecious)
ATTCCGAAGCTGATCCTTCGGGCGGAGGGGGAGCTACGCATAGAGTTCAG
CACCGGACACCTGCAGACGATCTGGCTTAGGGGAGAGATTCCGAAGCTGA
TCCTTCGGGCGGAGGGGGAGCTACGCATAGAGTTCAGCACCGGACACCTG
CAGACGATCTGGCTTAGGGGAGAGGTCTTGCGACCGGTCATCACAGTGGC
CCCAGCGACCCACTCCTTTGGAACCATCCACACCGAGCGCAAAGGAAACG
CAACGCTGTTCGTCGGAAACCCCACGGTCGTCGACGCTGAGTGGTCCTTG
TCCCACGTCCCCGCGCCCCCTCCCAAGCAGCGAATTTCCTCTCCGAAAAG
AGTTTTGAACTCTTGTCTTGCGACCGGTCATCACAGTGGCCCCAGCGACC
CACTCCTTTGGAACCATCCACACCGAGCGCAAAGGAAACGCAACGCTGTT
CGTCGGAAACCCCACGGTCGTCGACGCTGAGTGGTCCTTGTCCCACGTCC
CCGCGCCCCCTCCCAAGCAGCGAATTTCCTCTCCGAAAAGAGTTTTGAAC
TCTTATGTCGCCATCGTGGTGGATGATCCTTCCGTGTTCGACTTCGGCGA
GCGCAACGGCGTGGCGGCTGGGGCGAAGCTTCCGCTGGGGTCCTCCGCGG
CGTGTCTGCCCGAAGACTGGAACCGTTTGGATATGTCGCCATCGTGGTGG
ATGATCCTTCCGTGTTCGACTTCGGCGAGCGCAACGGCGTGGCGGCTGGG
GCGAAGCTTCCGCTGGGGTCCTCCGCGGCGTGTCTGCCCGAAGACTGGAA
CCGTTTGGAT
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