mRNA_H-elongata_contig16561.4133.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig16561.4133.1 vs. uniprot
Match: D7G9C3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9C3_ECTSI) HSP 1 Score: 185 bits (469), Expect = 1.300e-51 Identity = 99/180 (55.00%), Postives = 114/180 (63.33%), Query Frame = 1
Query: 1 IPKLILRAEGELRIEFSTGHLQTIWLRGEVLRPVITVAPATHSFGTIHTERKGNATLFVGNPTVVDAEWSLSHVPAPPPKQRI-----------------SSPKRVLN-SYVA---------------------------IVVDDPSVFDFGERNGVAAGAKLPLGSSAACLPEDWNRLD 405
IP+L+LR GEL I F TGH+Q I+LRGEVLRP+ITVAPATHSFGTIHTER+GNATLF+GNPT DAEWSL H+PAPPPK+R+ S+P R + +YV +VVDDPSVF FGE GV G KLPL SSAACLPEDWNR +
Sbjct: 1085 IPRLVLRTTGELTIAFCTGHVQRIFLRGEVLRPMITVAPATHSFGTIHTERRGNATLFLGNPTFADAEWSLVHIPAPPPKKRLIHSNNADKATATGTTPTSNPARAASGAYVKGRHTGKPGGTDGSGSSGCSSVAGLFNPLVVDDPSVFVFGEEGGVLTGVKLPLKSSAACLPEDWNRFE 1264
BLAST of mRNA_H-elongata_contig16561.4133.1 vs. uniprot
Match: A0A7S2CR52_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CR52_9STRA) HSP 1 Score: 118 bits (295), Expect = 9.820e-29 Identity = 58/127 (45.67%), Postives = 77/127 (60.63%), Query Frame = 1
Query: 25 EGELRIEFSTGHLQTIWLRGEVLRPVITVAPATHSFGTIHTERKGNATLFVGNPTVVDAEWSLSHVPAPPPKQRISSPKRVLNSYVAIVVDDPSVFDFGERNGVAAGAKLPLGSSAACLPEDWNRLD 405
EG L + ++TG LQTI L G+V+RP+I AP+ H +G +HTE K T+FV NPT V+A W + HVP PPK I + + ++ D+P VF F E G G LPL S+ CLP+D NR D
Sbjct: 226 EGVLNLNYATGQLQTIKLVGQVMRPMIVCAPSEHEYGIVHTEGKAQITIFVSNPTEVEASWKIRHVPVQPPKVSIIASE--MDKPKPRPRDEPDVFSFSEYGGSQKGPSLPLESAGDCLPKDENRSD 350
BLAST of mRNA_H-elongata_contig16561.4133.1 vs. uniprot
Match: A0A835YLF8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLF8_9STRA) HSP 1 Score: 110 bits (275), Expect = 1.800e-25 Identity = 61/137 (44.53%), Postives = 71/137 (51.82%), Query Frame = 1
Query: 4 PKLILRAEGELRIEFSTGHL-----QTIWLRGEVLRPVITVAPATHSFGTIHTERKGNATLFVGNPTVVDAEWSLSHVPAPPPKQRISSPKRVLNSYVAIVVDDPSVFDFGERNGVAAGAKLPLGSSAACLPEDWNR 399
P L AEG L + Q L V+RP +T AP H +GT+H E ATL++ NPT VDA WSL H PAPPP + + + VDDPSVF F E G G LPLGSSAA LP D NR
Sbjct: 2041 PLLRAAAEGALTVAXXXXXXXAHARQAFALDAVVVRPALTAAPPRHDYGTVHVEAACGATLYLANPTAVDARWSLRHAPAPPPLMAHARRRDGSGAGDRACVDDPSVFSFSESGGTVRGPSLPLGSSAARLPTDGNR 2177
BLAST of mRNA_H-elongata_contig16561.4133.1 vs. uniprot
Match: F0YJY4_AURAN (MSP domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJY4_AURAN) HSP 1 Score: 105 bits (261), Expect = 1.380e-23 Identity = 57/133 (42.86%), Postives = 74/133 (55.64%), Query Frame = 1
Query: 7 KLILRAEGELRIEFSTGHLQTIWLRGEVLRPVITVAPATHSFGTIHTERKGNATLFVGNPTVVDAEWSLSHVP-APPPKQRISSPKRVLNSYVAIVVDDPSVFDFGERNGVAAGAKLPLGSSAACLPEDWNRL 402
KL +GEL + FSTG Q + L+G V+RP + +P H F + T+ +LF+ NPT VD EW L HVP I L+S VDDPSVFDF + G LPL S+AAC+P+D+NRL
Sbjct: 2150 KLKYDYDGELIVRFSTGQEQRVALQGTVVRPALVASPPAHDFKVVRTDGSSCLSLFLSNPTEVDIEWQLRHVPRGDRVSDGIDGDNAPLDS-----VDDPSVFDFSDVTAHMTGPSLPLKSAAACVPKDFNRL 2277
BLAST of mRNA_H-elongata_contig16561.4133.1 vs. uniprot
Match: A0A6G0X5N2_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X5N2_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 1.800e-18 Identity = 46/119 (38.66%), Postives = 69/119 (57.98%), Query Frame = 1
Query: 28 GELRIEFSTGHLQTIWLRGEVLRPVITVAPATHSFGTIHTERKGNATLFVGNPTVVDAEWSLSHVPAPPPKQRISSPKRVLNSYVAIVVDDPSVFDFGERNGVAAGAKLPLGSSAACLP 384
G+L + +S G QTI L+G VLRP + +AP+ FG +H + N T+++ NPT VDA +++ HVP ++S+ + DDP+VF RNGV G LPL +S+A +P
Sbjct: 1512 GQLDVRYSQGSTQTIALQGRVLRPRVVLAPSQFKFGRVHCTQSTNVTIYLSNPTEVDARFAVQHVP------QVST----------LTTDDPAVFHMAIRNGVVRGPSLPLYTSSALVP 1614
BLAST of mRNA_H-elongata_contig16561.4133.1 vs. uniprot
Match: A0A8K1CBX5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBX5_PYTOL) HSP 1 Score: 87.8 bits (216), Expect = 1.580e-17 Identity = 47/122 (38.52%), Postives = 69/122 (56.56%), Query Frame = 1
Query: 10 LILRAEGELRIEFSTGHLQTIWLRGEVLRPVITVAPATHSFGTIHTERKGNATLFVGNPTVVDAEWSLSHVPAPPPKQRISSPKRVLNSYVAIVVDDPSVFDFGERNGVAAGAKLPLGSSAA 375
L R EG L + F+ +Q + L GE+L PVI V+P+ +SFG +H + + L++ NPTVV A +++ HVP P P R K+ + ++ A DDPSVF +G G L L SS +
Sbjct: 1642 LTSRVEGALLVRFTNQSVQRLQLCGEILAPVILVSPSVYSFGHVHLSQTRSVLLYLTNPTVVPASFTIRHVPRPTPLSRAQ--KQEMTTHHAHFEDDPSVFTLAMTSGTLEGPTLSLRSSGS 1761
BLAST of mRNA_H-elongata_contig16561.4133.1 vs. uniprot
Match: A0A7S3UW56_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UW56_HETAK) HSP 1 Score: 85.9 bits (211), Expect = 3.690e-17 Identity = 48/134 (35.82%), Postives = 73/134 (54.48%), Query Frame = 1
Query: 10 LILRAEGELRIEFSTGHLQTIWLRGEVLRPVITVAPATHSFGTIHTERKG-NATLFVGNPTVVDAEWSLSHVPAPP-PKQRISSPKRVLNSYVAIVVDDPSVFDFGERNGVAAGAKLPLGSSAACLPEDWNRLD 405
L+ + G + + FSTG Q I L G +LRP++ +P+ + FG G + L + NPT V+A W+L HVP+ K R++ ++ + D P VF+F + G AG +PL ++A CLP D NR D
Sbjct: 163 LMEQVNGSMTVTFSTGCTQQIDLTGNILRPMLVCSPSKYHFGIGMVGGDGVSIYLSISNPTEVEANWNLIHVPSKTFTKSRLAGLGGMVQN-----TDHPDVFEFSTKQGTLAGPTMPLQTAAVCLPTDVNRAD 291
BLAST of mRNA_H-elongata_contig16561.4133.1 vs. uniprot
Match: A0A1W0A367_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A367_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 5.440e-17 Identity = 46/119 (38.66%), Postives = 60/119 (50.42%), Query Frame = 1
Query: 28 GELRIEFSTGHLQTIWLRGEVLRPVITVAPATHSFGTIHTERKGNATLFVGNPTVVDAEWSLSHVPAPPPKQRISSPKRVLNSYVAIVVDDPSVFDFGERNGVAAGAKLPLGSSAACLP 384
G L I FS G LQTI L+G +LRP++ +AP+ FG +H E +++ NPT VDA + + HVP K VDDPSVF G G LPL +S A +P
Sbjct: 1530 GALMIRFSQGTLQTIQLQGRILRPILVIAPSHFKFGLVHCEHSETVKIYLSNPTQVDANFRVHHVPHLGTK----------------TVDDPSVFQLSATTGTLKGPSLPLHTSGALVP 1632
BLAST of mRNA_H-elongata_contig16561.4133.1 vs. uniprot
Match: A0A7S1CKI7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CKI7_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 1.430e-10 Identity = 35/97 (36.08%), Postives = 45/97 (46.39%), Query Frame = 1
Query: 127 SFGTIHTERKGNATLFVGNPTVVDAEWSLSHVPAPPPKQRISSPKRVLN-------------------SYVAIVVDDPSVFDFGERNGVAAGAKLPL 360
+FG HTE+ +F+ NPT V+AEW + HVPAPPPK R++ L + + DDP VFDF R G G PL
Sbjct: 1 NFGHCHTEKVKTKEVFLANPTEVEAEWKVVHVPAPPPKPRVTIDVSALGLEGIKGIDLQALSGAAPEGAAKIVEEDDPDVFDFSVRGGTLTGPTAPL 97 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16561.4133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16561.4133.1 >prot_H-elongata_contig16561.4133.1 ID=prot_H-elongata_contig16561.4133.1|Name=mRNA_H-elongata_contig16561.4133.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp IPKLILRAEGELRIEFSTGHLQTIWLRGEVLRPVITVAPATHSFGTIHTEback to top mRNA from alignment at H-elongata_contig16561:4534..5934- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16561.4133.1 ID=mRNA_H-elongata_contig16561.4133.1|Name=mRNA_H-elongata_contig16561.4133.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1401bp|location=Sequence derived from alignment at H-elongata_contig16561:4534..5934- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16561:4534..5934- >mRNA_H-elongata_contig16561.4133.1 ID=mRNA_H-elongata_contig16561.4133.1|Name=mRNA_H-elongata_contig16561.4133.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig16561:4534..5934- (Himanthalia elongata Himel1 dioecious)back to top |