mRNA_H-elongata_contig1656.4131.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1656.4131.1
Unique NamemRNA_H-elongata_contig1656.4131.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1656.4131.1 vs. uniprot
Match: A0A0A9Z683_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=3 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Z683_LYGHE)

HSP 1 Score: 198 bits (504), Expect = 5.270e-52
Identity = 129/420 (30.71%), Postives = 219/420 (52.14%), Query Frame = 1
Query:    1 VDRPKDKLVVGTKMLYERKVGQNGKIEKYKCRLVAQGFWQVEGVHDTETYLLTPATASIRMLLATAATKDGELRHFDAEKAFLKADIDEELYIEIP------GSIRSFR------------------------GHRQRRIRACFVRSLTKRRKWWWSYMWTTFLAHAKDKATMDRFAAELGQKFKLKDMGDAMYYMGCHISRNHKAHELKIDQHLHVESMMEKFDVKKGSKIPTTLGVPT-LSKADEPWNPEEKEEMRKFPYREAARALLWTTTMTRPDIASPVRAIARFCKNPGSAHKRTVMKVM*YLLYTKGWGITYDGQGC*LCLEAYKDSDFGACLDTRRSVSGAVLMLAKGAINWYSRMQGVTASGTSEAEYIVLSKAVKEVIFLKEVQEFMEPSMRGPSNWPPISMLVVGQSTL 1167
            VD P  K+ + +K ++  K    GKI K+K RLV +G  Q +G+   ET+      +SIR LLA AA +D ++   DA  AFL+ D+ EE+Y+  P      G +   R                        G RQ +   C     ++++  + +      L  + DK       ++L + FK+ D+G+A + +G  ISR+ +  ++ +DQ  ++++++ +F ++  +   T L     LSK  +P +P+E+++M   PY+EA  +LL+ + + RPDIA  V  ++RF  NPG AH   V +++ Y+  T  W + YDG      +  Y DSDF + +D R+SV+G V ++  G+++W ++ Q  TA  T+EAEY+ LS A +E ++L+ + E + P    PS   P+ + V  Q  L
Sbjct:  875 VDLPPGKVPLNSKWVFRTKRDVTGKIVKHKARLVVKGCAQRKGLDFEETFSPVVRYSSIRYLLALAAKRDMDIHQMDAVSAFLQGDLTEEIYMRQPEGYQESGKVCRLRKSLYGLKQASRVWNIKLDRSLKTIGLRQSKFDPCIYYKSSQKKMVFVAVWVDDLLIFSDDKKLTQEVKSQLMKCFKMTDIGEAKFVLGFQISRDRERKKIWMDQRAYIDNVLIRFGMENCNPAATPLDPNIKLSKDQQPSSPDERKKMEAIPYQEAVGSLLFASQVCRPDIAFAVSLVSRFNSNPGPAHWAAVKRILRYMKGTSDWKLEYDGTKS-SEITGYCDSDFASDVDERKSVTGYVFLMCDGSVSWGTKKQPTTALSTTEAEYMALSAATQEALWLRGLSEELVP----PSERIPLRIFVDNQGAL 1289          
BLAST of mRNA_H-elongata_contig1656.4131.1 vs. uniprot
Match: A0A2N9IFW4_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IFW4_FAGSY)

HSP 1 Score: 194 bits (492), Expect = 1.460e-50
Identity = 129/378 (34.13%), Postives = 196/378 (51.85%), Query Frame = 1
Query:    1 VDRPKDKLVVGTKMLYERKVGQNGKIEKYKCRLVAQGFWQVEGVHDTETYLLTPATASIRMLLATAATKDGELRHFDAEKAFLKADIDEELYIEIPGSIRSFRGHRQRRIRACFVRSLTKRRKWWWSYMWTTFLAHAKDKATMDRFAAELGQKFKLKDMGDAMYYMGCHISRNHKAHELKIDQHLHVESMMEKF---DVKKGSKIPTTLGVPTLSKADEPWNPEEKEEMRKFPYREAARALLWTTTMTRPDIASPVRAIARFCKNPGSAHKRTVMKVM*YLLYTKGWGITYDGQGC*LCLEAYKDSDFGACLDTRRSVSGAVLMLAKGAINWYSRMQGVTASGTSEAEYIVLSKAVKEVIFLKE-VQEF-MEPSMRGP 1119
            VD+P+    +G K +Y+RK+G  GK+E YK RLVA+G+ Q  G+   ET+       SIR+LL+ AA  D E+   D + AFL  +I EE+Y++ P                                     ++ A+ K  M      L   F +KD+G+A Y +G  + R+ K   L + Q  +++ ++ +F   D KKG   P   GV  LSK   P   EE+E+MR  PY  A  +L++    TRPDI   V  ++R+  NPG  H   V  ++ YL  TK + + +  +   L ++ Y DS+F + +D R+S+SG V  L KGAI+W S  Q  TA  T+EAEYI  S+A KE +++++ +QE  + PS+  P
Sbjct:  583 VDKPEGIKPIGCKWIYKRKLGPTGKVETYKARLVAKGYTQKVGIDYEETFSPVAMLKSIRILLSIAAHYDYEIWQMDVKTAFLNGNIREEIYMDQPVGFH---------------------------------ISWARIKRAMSSIKMWLSSHFAMKDLGEASYILGIKLFRDRKKRLLGLSQVNYIDKILARFSMQDSKKGFS-PFRHGV-HLSKNMCPKTQEEREKMRNCPYASAVGSLMYAMLCTRPDICYAVSIVSRYQSNPGPEHWTAVKHILKYLNRTKHYFLVFGSKD--LNIQGYTDSNFQSDIDDRKSISGFVFTLGKGAISWRSCKQDTTADSTTEAEYIAASEAAKEAVWIRKFIQELGVVPSIESP 923          
BLAST of mRNA_H-elongata_contig1656.4131.1 vs. uniprot
Match: A0A146IDX7_MYCCL (Polyprotein (Fragment) n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146IDX7_MYCCL)

HSP 1 Score: 192 bits (489), Expect = 4.960e-50
Identity = 129/372 (34.68%), Postives = 187/372 (50.27%), Query Frame = 1
Query:    1 VDRPKDKLVVGTKMLYERKVGQNGKIEKYKCRLVAQGFWQVEGVHDTETYLLTPATASIRMLLATAATKDGELRHFDAEKAFLKADI--DEELYIEIPGSIRSFRGHRQRRIRACFVRSLTKRRKWWWSYMWTTFLAHAKDKATMDRFAAELGQKFKLKDMGDAMYYMGCHISRNHKAHELKIDQHLHVESMMEKFDVKKGSKIPTTLGVP-TLSKADEPWNPEEKEEMRKFPYREAARALLWTTTMTRPDIASPVRAIARFCKNPGSAHKRTVMKVM*YLLYTKGWGITYDGQGC*LCLEAYKDSDFGACLDTRRSVSGAVLMLAKGAINWYSRMQGVTASGTSEAEYIVLSKAVKEVI-FLKEVQEFMEP 1104
            V RPKD+ VVG K     K  +NG IEKYK RLVA+GF QV+GV   ET+  T   +S+R LL+ AA  + E   FD   AFL  +   DEE+++E P    +    +  R+           RK                 A +D    E+G    +  +G   + +G  + RN     L + Q  ++++++EKF +     +   L     LS    P +  EK +M+K PYRE    L+W +T TRPD+A  V  ++RF  NPG  H     +V+ YL  T+  G+TY G    L L  + D+D G  L+ R++VSG V  L  G+++W S+ Q +TA  T+EAEYI L+   KE + F K + E   P
Sbjct:  822 VTRPKDRNVVGAKWALRIKRQENGAIEKYKARLVARGFTQVQGVDYFETFSPTAKLSSLRTLLSIAAGYNWETEVFDYSAAFLNGEFSGDEEIFMEQPPHYHNGDNTQVIRLSRTIYGLKQSARK---------CTITGSSPALIDEVQREIGALLPITRLGPISWLLGMEVKRNRAERTLTLTQSTYIDALIEKFGMSNAKPLSVPLDPNHQLSIEQCPTSDTEKLDMKKVPYRELIGGLVWLSTATRPDLAFTVTTLSRFISNPGRPHWDAAKRVLQYLKGTRTLGLTYGGSAEKLGLNIFADAD-GMSLEDRKAVSGYVFTLNGGSVSWSSKQQAITALSTTEAEYISLTHCAKEALWFRKFISELFGP 1183          
BLAST of mRNA_H-elongata_contig1656.4131.1 vs. uniprot
Match: A0A2N9IUC8_FAGSY (Integrase catalytic domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IUC8_FAGSY)

HSP 1 Score: 191 bits (484), Expect = 8.200e-50
Identity = 137/412 (33.25%), Postives = 205/412 (49.76%), Query Frame = 1
Query:    1 VDRPKDKLVVGTKMLYERKVGQNGKIEKYKCRLVAQGFWQVEGVHDTETYLLTPATASIRMLLATAATKDGELRHFDAEKAFLKADIDEELYIEIP----------------------------------GSIRSFRGHRQRRIRACFVRSLTKRRKWWWSYMWTTFLAHAKDKATMDRFAAELGQKFKLKDMGDAMYYMGCHISRNHKAHELKIDQHLHVESMMEKF---DVKKGSKIPTTLGVPTLSKADEPWNPEEKEEMRKFPYREAARALLWTTTMTRPDIASPVRAIARFCKNPGSAHKRTVMKVM*YLLYTKGWGITYDGQGC*LCLEAYKDSDFGACLDTRRSVSGAVLMLAKGAINWYSRMQGVTASGTSEAEYIVLSKAVKEVIFLKE-VQEF-MEPSMRGP 1119
            VD+P+    +G K +Y+RK+G  GK+E YK RLVA+G+ Q  G+   ET+       SIR+LL+ AA  D E+   D + AFL  +I EE+Y++ P                                   +I+SF G  Q     C  + ++ R   +        L    D   M      L   F +KD+G+A Y +G  + R+ K   L + Q  +++ ++ +F   D KKG   P   GV  LSK   P   EE+E+MR  PY  A  +L++    TRPDI   V  ++R+  NPG  H   V  ++ YL  TK + + +  +   L ++ Y DSDF + +D R+S+SG V  L KGAI+W S  Q  TA  T EAEYI  S+A KE +++++ +QE  + PS+  P
Sbjct:  350 VDKPEGIKPIGCKWIYKRKLGPTGKVETYKVRLVAKGYTQKAGIDYEETFSPVAMLKSIRILLSIAAHYDYEIWQMDVKTAFLNGNIREEIYMDQPVGFISHGQESKVCKLMKSIYGLKQASRSWNIRFDEAIKSF-GFSQNIDEPCVYKKVSGRIITFLILYVDDILLIGNDVGAMSSIKMWLSSHFAMKDLGEASYILGIKLFRDRKKRLLGLSQVNYIDKILARFSMQDSKKGFS-PFRHGV-HLSKNMCPKTQEEREKMRNCPYASAVGSLMYAMLCTRPDICYAVSIVSRYQSNPGPEHWTAVKHILKYLNRTKHYFLVFGSKD--LNIQGYTDSDFQSDIDDRKSISGFVFTLGKGAISWRSCKQDTTADSTIEAEYIAASEAAKEAVWIRKFIQELGVVPSIESP 756          
BLAST of mRNA_H-elongata_contig1656.4131.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 1.320e-48
Identity = 121/408 (29.66%), Postives = 207/408 (50.74%), Query Frame = 1
Query:   10 PKDKLVVGTKMLYERKVGQNGKIEKYKCRLVAQGFWQVEGVHDTETYLLTPATASIRMLLATAATKDGELRHFDAEKAFLKADIDEELYIEIPGSIRSFRGHRQRRI----RACFVRSLTKRRKWWWSYMWTTFLAHAKDKATMD---------------------------------RFAAELGQKFKLKDMGDAMYYMGCHISRNHKAHELKIDQHLHVESMMEKFDVKKGSKIPTTLGVPTLSKADEPWNPEEKEEMRKFPYREAARALLWTTTMTRPDIASPVRAIARFCKNPGSAHKRTVMKVM*YLLYTKGWGITYDGQGC*LCLEAYKDSDFGACLDTRRSVSGAVLMLAKGAINWYSRMQGVTASGTSEAEYIVLSKAVKEVIFLKEVQEFMEPSMRGPS 1122
            P+ +  V +K  +  K  ++GKIEK+K RLVA+GF Q+  V    +    P++ASI+++LA A  K  +L H+D ++AF  A +DE++++ +P       G +  ++    RA +   L +  + W  +   T + +  ++   D                                    A L + F  KD+G+ +++ GC + R+ +A  L+I Q  +++S++ +FDV+  S IP + GV    K D+       E   ++P REA  +++W +T +RPDI+  VRA+AR    P   H + ++K++ YL  T+  GITY+ +G  L L  Y D+ +    D RRSVSG    +    I+  S+ Q + +  ++EAEYI   + VKE +F++ V  F+ P   G S
Sbjct:   39 PEGRRPVSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGC----GEKSHKVVKAERAIY--GLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDD-------ESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYE-RGSGLGLAVYVDASYADAED-RRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSS 431          
BLAST of mRNA_H-elongata_contig1656.4131.1 vs. uniprot
Match: A5AHF5_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5AHF5_VITVI)

HSP 1 Score: 182 bits (461), Expect = 1.660e-48
Identity = 117/361 (32.41%), Postives = 177/361 (49.03%), Query Frame = 1
Query:    1 VDRPKDKLVVGTKMLYERKVGQNGKIEKYKCRLVAQGFWQVEGVHDTETYLLTPATASIRMLLATAATKDGELRHFDAEKAFLKADIDEELYIEIPGSIRSFRGHRQRRIRACFVRSLTKRRKWWWSYMWTTFLAHAKDKATMDRFAAELGQKFKLKDMGDAMYYMGCHISRNHKAHELKIDQHLHVESMMEKFDVKK-GSKIPTTLGVPTLSKADEPWNPEEKEEMRKFPYREAARALLWTTTMTRPDIASPVRAIARFCKNPGSAHKRTVMKVM*YLLYTKGWGITYDGQGC*LCLEAYKDSDFGACLDTRRSVSGAVLMLAKGAINWYSRMQGVTASGTSEAEYIVLSKAVKEVIFLK 1080
            ++ P     VG K +++ K    G IE+YK RLVA+GF Q EG+   +T+       S+R+++   A  D EL   D + AFL  ++DE++Y+E P                                          D   +      L + F + DMG+A Y +G  I R+     L + Q  +++ ++E+F+++   S I   L    LSK   P N  E+E+M+K PY  A  +L++  T TRPDI+  V    R+  +PG  H +   KVM YL  TK + +TY      L +  Y DSD+G CLD+ +S SG V MLA GAI+W S  Q +TAS T EAE++   +A    ++L+
Sbjct:   79 IELPNSCKPVGCKWIFKTKRDAKGNIERYKARLVAKGFTQKEGIDYKDTFSPVSKKDSLRIIMTLVAHFDLELHQMDVKTAFLNGNLDEDIYMEQPEG----------------------------------------DLGLLHETKEYLSKNFHMVDMGEANYVIGIEIFRDRSRGVLGLSQKGYIDWVLERFNMQSCSSGIAPILKGDKLSKMQCPRNNMEREQMKKIPYASAVGSLMYAQTCTRPDISFVVGMFGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYKRSEQ-LEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHALWLR 398          
BLAST of mRNA_H-elongata_contig1656.4131.1 vs. uniprot
Match: A0A438EN28_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EN28_VITVI)

HSP 1 Score: 184 bits (468), Expect = 2.190e-48
Identity = 126/378 (33.33%), Postives = 189/378 (50.00%), Query Frame = 1
Query:    1 VDRPKDKLVVGTKMLYERKVGQNGKIEKYKCRLVAQGFWQVEGVHDTETYLLTPATASIRMLLATAATKDGELRHFDAEKAFLKADIDEELYIEIPGSIRSFRGH-----------------RQRRIRACFVRSLTKRRKWWWSYMWTTFLAHAKDKATMDRFAAELGQKFKLKDMGDAMYYMGCHISRNHKAHELKIDQHLHVESMMEKFDVKKGSKIPTTLGVPTLSKADE-PWNPEEKEEMRKFPYREAARALLWTTTMTRPDIASPVRAIARFCKNPGSAHKRTVMKVM*YLLYTKGWGITYDGQGC*LCLEAYKDSDFGACLDTRRSVSGAVLMLAKGAINWYSRMQGVTASGTSEAEYIVLSKAVKEVIFLK 1080
            V+ P     +G K +++ K    G IE+YK RLVA+GF Q EG+  TET+       S+R++LA  A  D EL+  D + AFL  +++EE+Y++ P    S  G                  RQ   + CF+            Y+    LA   DK  +      L + F +KDMG+A Y +G  I R+     L + Q  ++  ++E+F +K  S   + +        D+ P N  E+E+M+  PY  A  +L++    TRPDIA  V  + R+  NPG  H +   KVM YL  TK + + Y      L +  Y DSDF  C+D+R+S SG + +LA GAI+W S  Q +TA+ T EAE+I   +A    ++LK
Sbjct:  273 VELPNGVKTIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFLNGELEEEVYMKQPEGFPSSDGEQLVCKLKKSIYGLKQASRQCGSKVCFLVL----------YVDDILLA-TNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFKGILGLSQETYINKVLERFRMKNCSPSVSPIVKGDRFNLDQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRYQSNPGIDHWKAAKKVMRYLQGTKDYKLMYRRTSN-LEVVGYSDSDFAGCVDSRKSTSGYIFILAGGAISWRSVKQTMTATSTMEAEFISCFEATSHGVWLK 638          
BLAST of mRNA_H-elongata_contig1656.4131.1 vs. uniprot
Match: A0A2G8RWY5_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RWY5_9APHY)

HSP 1 Score: 187 bits (476), Expect = 2.720e-48
Identity = 127/410 (30.98%), Postives = 210/410 (51.22%), Query Frame = 1
Query:    1 VDRPKDKLVVGTKMLYERKVGQNGKIEKYKCRLVAQGFWQVEG--VHDTETYLLTPATASIRMLLATAATKDGELRHFDAEKAFLKADIDEELYIEIP-GSIRSFRGHRQRRIRACFVRSLTKRRKWWWSYMWTTF-------------------------LAHAKDKATM-------DRFAAELGQKFKLKDMGDAMYYMGCHISRNHKAHELKIDQHLHVESMMEKFDVKKGS--KIPTTLGVPTLSKADEPWNPEEKEEMRKFPYREAARALLWTTTMTRPDIASPVRAIARFCKNPGSAHKRTVMKVM*YLLYTKGWGITY--DGQGC*LCLEAYKDSDFGACLDTRRSVSGAVLMLAKGAINWYSRMQGVTASGTSEAEYIVLSKAVKEVIFLKEV-QEFMEPSM 1110
            V+ P D  +VG+K+++  K    G +  +K RLVAQGF QV G   HD ET+       SIR +L+ AA  D ELR  D + A+L   ++E +Y+ +P G     + H   R++      L +  + W+  +                             +A + D  T+       D FA ++ Q+F++ D+GD  + +G  + R+ +A  + I Q  ++++++ +F++ + +   IP   G P L     P  P + E+MR  PYREA  +L++    TRPDI   V A+++F +NPG AH   + +V+ YL  ++   + Y  + +G    L  Y D+D+G+  + R S+SG V  L  GAI+W S+ Q V A  ++EAEYI L+ A KE I+L+ V  + + P +
Sbjct: 1063 VEPPPDANIVGSKLVFRVKHDAEGAVSGFKARLVAQGFSQVPGRDYHDDETFAPVSRLPSIRTILSLAARHDWELRQMDVKSAYLNGILEETVYMRLPPGFAPPEQSHLVCRLKKTLY-GLKQAGRGWYKTLTAAMENMGFTRCVADHAVFYKREGESAIIVAASVDDLTITGTSDLVDAFAVDIKQRFEMSDLGDLHWILGIEVRRDRQARTIAISQRSYIDTIVSRFNLDEAAPLSIPLQPGSP-LGNHQSPSTPRQFEDMRDVPYREAVGSLMYAAMGTRPDITFAVTALSQFMQNPGRAHWDALKRVLRYLKGSRELWLVYGTNNEG----LRGYSDADWGSSTEHRHSISGYVFTLDGGAISWSSKKQNVVALSSTEAEYIALTHATKEAIWLRYVLSDILHPEL 1466          
BLAST of mRNA_H-elongata_contig1656.4131.1 vs. uniprot
Match: A0A2G8RW53_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RW53_9APHY)

HSP 1 Score: 187 bits (476), Expect = 2.990e-48
Identity = 125/401 (31.17%), Postives = 203/401 (50.62%), Query Frame = 1
Query:    1 VDRPKDKLVVGTKMLYERKVGQNGKIEKYKCRLVAQGFWQVEG--VHDTETYLLTPATASIRMLLATAATKDGELRHFDAEKAFLKADIDEELYIEIPGSIRS-FRGHRQRRIRACFVRSLTKRRKWWWSYMWTTFLAHAKDKATMDR--------------------------------FAAELGQKFKLKDMGDAMYYMGCHISRNHKAHELKIDQHLHVESMMEKFDVKKGS--KIPTTLGVPTLSKADEPWNPEEKEEMRKFPYREAARALLWTTTMTRPDIASPVRAIARFCKNPGSAHKRTVMKVM*YLLYTKGWGITY--DGQGC*LCLEAYKDSDFGACLDTRRSVSGAVLMLAKGAINWYSRMQGVTASGTSEAEYIVLSKAVKEVIFLKEV 1086
            V+ P D  +VG+K+++  K    G +  +K RLVAQGF QV G   HD ET+       SIR +LA AA  D ELR  D + A+L   ++E +Y+  P S     + H   R++      L +  + W+  +    L     +   D                                 FAA++ Q+F++ D+G+  + +G  + R+ +A  + I Q  ++++ + +F+++  +   IP   G P L +   P  P + E+MR  PYREA  +L++    TRPD+   V A+++F +NPG AH   + +V+ YL  T+   + Y  D  G    L ++ D+D+G+ ++ R S+SG V  L  GAI+W S+ Q V A  ++EAEYI L+ A KE I+L+ V
Sbjct: 1846 VEPPPDANIVGSKLVFRVKHNVEGTVSGFKARLVAQGFSQVPGRDYHDDETFAPVSRLPSIRTILALAARHDWELRQMDVKSAYLNGTLEETVYMHQPPSFSMPEQSHLVCRLKKTLY-GLKQAGRGWYKTLTAAMLQMGFTRCVADHAVFYKREGESAIIVAASVDDLTIAGTSDLVNAFAADIKQRFEMSDLGNLHWILGIEVRRDCQARTIAISQRSYIDTTVSRFNLEDAAPLSIPLQPGSP-LGQHQSPSTPRQFEDMRDVPYREAVGSLMYAAMGTRPDVTFAVTALSQFMQNPGRAHWDAIKRVLRYLKGTRELWLVYGDDNNG----LHSFSDADWGSSMEHRHSISGYVFTLDGGAISWSSKKQNVVALSSTEAEYIALTHATKEAIWLRYV 2240          
BLAST of mRNA_H-elongata_contig1656.4131.1 vs. uniprot
Match: A0A401GQU1_9APHY (Uncharacterized protein n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GQU1_9APHY)

HSP 1 Score: 187 bits (474), Expect = 4.930e-48
Identity = 124/400 (31.00%), Postives = 210/400 (52.50%), Query Frame = 1
Query:    1 VDRPKDKLVVGTKMLYERKVGQNGKIEKYKCRLVAQGFWQVEGVHDTETYLLTPATASIRMLLATAATKDGELRHFDAEKAFLKADIDEELYI-EIPGSIRSFRGHRQRRIRACFVRSLTKRRKWWWSYMW---------------------------TTFLAHAKDKATMDR-------FAAELGQKFKLKDMGDAMYYMGCHISRNHKAHELKIDQHLHVESMMEKFDVKKGSKIPTTLGVPT-LSKADEPWNPEEKEEMRKFPYREAARALLWTTTMTRPDIASPVRAIARFCKNPGSAHKRTVMKVM*YLLYTKG----WGITYDGQGC*LCLEAYKDSDFGACLDTRRSVSGAVLMLAKGAINWYSRMQGVTASGTSEAEYIVLSKAVKEVIFLK 1080
            V+ P++  VVG+K ++  K   NGKIE YK RLVAQGF Q+ G+   +T+      ASIR++LA AA  D ++   D + A+L AD++EE+++ + PG  +  + H    +R   +  L +  + W+  M                            T  +A + D  T+         F  E+ ++F++ D+G+  + +G  + R+  A  L + Q  +++ +M +F+++    + T L     LS    P  P E E+MR  PYREA  +L++    TRPDIA  V A+++F +NPG AH     +V+ YL  T+     +G+T +G      +E + D+D+G+  + R S+ G V ++  GA++W ++ Q V A  ++EAEYI L+ A KE I+++
Sbjct:  995 VEPPENTNVVGSKFVFRIKRNANGKIESYKARLVAQGFSQIPGIDFNDTFAPVAKLASIRIILALAARHDWDVHQMDVKGAYLNADLEEEIFMKQPPGQAKRGKEHWVCLLRHA-IYGLKQSGRQWFKKMCAALDEMGLSRSLVDHCVFYLDEDDDSVTLIIALSVDDTTIAGTNNAVLWFKTEISKRFEMTDLGEMHWILGIEVRRDRAARTLSLSQRAYIDGLMARFNLEDAKPLSTPLEPGAILSIRQCPSTPREFEDMRNVPYREAIGSLMYAALGTRPDIAFAVTALSQFMQNPGRAHWEAAKRVLRYLKSTREKWLTYGLTRNG------VEGFSDADWGSS-EHRHSICGYVFLIDGGAVSWSAKKQPVVALSSTEAEYIALTHAAKEAIWVR 1386          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1656.4131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0A9Z683_LYGHE5.270e-5230.71Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9IFW4_FAGSY1.460e-5034.13CCHC-type domain-containing protein n=1 Tax=Fagus ... [more]
A0A146IDX7_MYCCL4.960e-5034.68Polyprotein (Fragment) n=1 Tax=Mycena chlorophos T... [more]
A0A2N9IUC8_FAGSY8.200e-5033.25Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JCG0_9PHAE1.320e-4829.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A5AHF5_VITVI1.660e-4832.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438EN28_VITVI2.190e-4833.33Retrovirus-related Pol polyprotein from transposon... [more]
A0A2G8RWY5_9APHY2.720e-4830.98Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]
A0A2G8RW53_9APHY2.990e-4831.17Integrase catalytic domain-containing protein n=1 ... [more]
A0A401GQU1_9APHY4.930e-4831.00Uncharacterized protein n=3 Tax=Sparassis crispa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1656contigH-elongata_contig1656:4300..5696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score129.0
Seed ortholog evalue3.2e-27
Seed eggNOG ortholog65672.G4TWW2
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs227R3@155619,38DPC@33154,3H58M@355688,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1301
Cds size789
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1656.4131.1prot_H-elongata_contig1656.4131.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1656 4773..5657 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929969.114832-UTR-H-elongata_contig1656:4299..47721622929969.114832-UTR-H-elongata_contig1656:4299..4772Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1656 4300..4772 -
1691679228.328664-UTR-H-elongata_contig1656:4299..47721691679228.328664-UTR-H-elongata_contig1656:4299..4772Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1656 4300..4772 -
1622929969.1587565-UTR-H-elongata_contig1656:5657..56961622929969.1587565-UTR-H-elongata_contig1656:5657..5696Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1656 5658..5696 -
1691679228.3673916-UTR-H-elongata_contig1656:5657..56961691679228.3673916-UTR-H-elongata_contig1656:5657..5696Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1656 5658..5696 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929969.1292157-CDS-H-elongata_contig1656:4772..52861622929969.1292157-CDS-H-elongata_contig1656:4772..5286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1656 4773..5286 -
1691679228.3442264-CDS-H-elongata_contig1656:4772..52861691679228.3442264-CDS-H-elongata_contig1656:4772..5286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1656 4773..5286 -
1622929969.1450748-CDS-H-elongata_contig1656:5382..56571622929969.1450748-CDS-H-elongata_contig1656:5382..5657Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1656 5383..5657 -
1691679228.3569589-CDS-H-elongata_contig1656:5382..56571691679228.3569589-CDS-H-elongata_contig1656:5382..5657Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1656 5383..5657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1656.4131.1

>prot_H-elongata_contig1656.4131.1 ID=prot_H-elongata_contig1656.4131.1|Name=mRNA_H-elongata_contig1656.4131.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=263bp
MLYERKVGQNGKIEKYKCRLVAQGFWQVEGVHDTETYLLTPATASIRMLL
ATAATKDGELRHFDAEKAFLKADIDEELYIEIPGSIRSFRGHRQRRIRAC
FVRSLTKRRKWWWSYMWTTFLAHAKDKATMDRFAAELGQKFKLKDMGDAM
YYMGCHISRNHKAHELKIDQHLHVESMMEKFDVKKGSKIPTTLGVPTLSK
ADEPWNPEEKEEMRKFPYREAARALLWTTTMTRPDIASPVRAIARFCKNP
GSAHKRTVMKVM*
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mRNA from alignment at H-elongata_contig1656:4300..5696-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1656.4131.1 ID=mRNA_H-elongata_contig1656.4131.1|Name=mRNA_H-elongata_contig1656.4131.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1397bp|location=Sequence derived from alignment at H-elongata_contig1656:4300..5696- (Himanthalia elongata Himel1 dioecious)
GTGGATCGGCCGAAGGATAAGCTCGTGGTTGGTACAAAAATGCTTTACGA GCGAAAGGTCGGACAGAACGGCAAGATCGAGAAGTACAAGTGCCGACTTG TCGCTCAAGGGTTCTGGCAGGTGGAAGGTGTGCACGACACGGAAACGTAC TTGCTCACGCCAGCGACCGCGTCAATCCGGATGCTTTTGGCGACGGCAGC GACCAAGGACGGAGAGCTGCGTCATTTCGACGCGGAGAAGGCATTCTTGA AGGCGGACATCGATGAGGAATTGTATATTGAGATCCCGGGGAGTATCAGG AGTTTCCGGGGGCAGTGGGACGGCAAAACAAGACCATTTACGGGCTCGTA CAGGCGGGGAGGTGCAGAAACAACAAGGTCTGCGACGATATGGCGGCGAT TGGATTCGAGCAGGCAAAGGCGGATCCGTGCGTGTTTCGTAAGGTCGTTG ACGAAAAGGCGGAAGTGGTGGTGGTCGTACATGTGGACGACATTTCTTGC TCACGCCAAAGACAAAGCGACGATGGATAGATTCGCGGCTGAGCTTGGAC AAAAGTTCAAATTGAAGGACATGGGAGACGCCATGTACTACATGGGCTGT CACATCTCTAGAAACCACAAGGCGCACGAGTTAAAGATCGACCAACACCT GCACGTAGAGTCGATGATGGAAAAGTTCGACGTCAAGAAGGGAAGCAAGA TACCGACTACGTTGGGGGTGCCAACACTCTCAAAGGCGGACGAGCCGTGG AACCCGGAGGAAAAGGAGGAAATGAGAAAGTTTCCATACCGGGAGGCAGC GAGGGCGCTTTTATGGACGACGACAATGACACGGCCGGACATTGCGAGCC CAGTACGCGCTATCGCGAGGTTCTGCAAAAACCCTGGGTCGGCGCATAAG AGGACAGTGATGAAGGTCATGTAGTATCTCCTTTACACAAAGGGTTGGGG GATTACATATGATGGACAGGGCTGTTGACTCTGCCTGGAGGCATACAAGG ACTCAGATTTCGGAGCCTGCCTCGATACGAGACGATCGGTGTCGGGTGCG GTGTTGATGCTGGCGAAAGGGGCGATCAACTGGTACTCAAGGATGCAAGG AGTGACAGCATCGGGTACCTCGGAAGCAGAGTACATTGTTTTATCAAAGG CGGTAAAGGAGGTTATATTTTTGAAAGAGGTCCAGGAGTTCATGGAACCG TCAATGAGGGGGCCATCGAATTGGCCACCAATAAGCATGCTAGTCGTAGG ACAAAGCACATTGATGTGAAACACCATATGGTGAGGGACGCGTCTGATGC GCAAAAGGTTAGAGTAATGCATGTGGGGTCAGAAGATCAGCACGTGGACT TGCCCACCAAGCCGCTAGACACGCATATGCTTTACAAGCACACGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig1656:4300..5696-

>mRNA_H-elongata_contig1656.4131.1 ID=mRNA_H-elongata_contig1656.4131.1|Name=mRNA_H-elongata_contig1656.4131.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1578bp|location=Sequence derived from alignment at H-elongata_contig1656:4300..5696- (Himanthalia elongata Himel1 dioecious)
ATGCTTTACGAGCGAAAGGTCGGACAGAACGGCAAGATCGAGAAGTACAA
GTGCCGACTTGTCGCTCAAGGGTTCTGGCAGGTGGAAGGTGTGCACGACA
CGGAAACGTACTTGCTCACGCCAGCGACCGCGTCAATCCGGATGCTTTTG
GCGACGGCAGCGACCAAGGACGGAGAGCTGCGTCATTTCGACGCGGAGAA
GGCATTCTTGAAGGCGGACATCGATGAGGAATTGTATATTGAGATCCCGG
GGAGTATCAGGAGTTTCCGGGGGCAATGCTTTACGAGCGAAAGGTCGGAC
AGAACGGCAAGATCGAGAAGTACAAGTGCCGACTTGTCGCTCAAGGGTTC
TGGCAGGTGGAAGGTGTGCACGACACGGAAACGTACTTGCTCACGCCAGC
GACCGCGTCAATCCGGATGCTTTTGGCGACGGCAGCGACCAAGGACGGAG
AGCTGCGTCATTTCGACGCGGAGAAGGCATTCTTGAAGGCGGACATCGAT
GAGGAATTGTATATTGAGATCCCGGGGAGTATCAGGAGTTTCCGGGGGCA
CAGGCAAAGGCGGATCCGTGCGTGTTTCGTAAGGTCGTTGACGAAAAGGC
GGAAGTGGTGGTGGTCGTACATGTGGACGACATTTCTTGCTCACGCCAAA
GACAAAGCGACGATGGATAGATTCGCGGCTGAGCTTGGACAAAAGTTCAA
ATTGAAGGACATGGGAGACGCCATGTACTACATGGGCTGTCACATCTCTA
GAAACCACAAGGCGCACGAGTTAAAGATCGACCAACACCTGCACGTAGAG
TCGATGATGGAAAAGTTCGACGTCAAGAAGGGAAGCAAGATACCGACTAC
GTTGGGGGTGCCAACACTCTCAAAGGCGGACGAGCCGTGGAACCCGGAGG
AAAAGGAGGAAATGAGAAAGTTTCCATACCGGGAGGCAGCGAGGGCGCTT
TTATGGACGACGACAATGACACGGCCGGACATTGCGAGCCCAGTACGCGC
TATCGCGAGGTTCTGCAAAAACCCTGGGTCGGCGCATAAGAGGACAGTGA
TGAAGGTCATGTAGCAGGCAAAGGCGGATCCGTGCGTGTTTCGTAAGGTC
GTTGACGAAAAGGCGGAAGTGGTGGTGGTCGTACATGTGGACGACATTTC
TTGCTCACGCCAAAGACAAAGCGACGATGGATAGATTCGCGGCTGAGCTT
GGACAAAAGTTCAAATTGAAGGACATGGGAGACGCCATGTACTACATGGG
CTGTCACATCTCTAGAAACCACAAGGCGCACGAGTTAAAGATCGACCAAC
ACCTGCACGTAGAGTCGATGATGGAAAAGTTCGACGTCAAGAAGGGAAGC
AAGATACCGACTACGTTGGGGGTGCCAACACTCTCAAAGGCGGACGAGCC
GTGGAACCCGGAGGAAAAGGAGGAAATGAGAAAGTTTCCATACCGGGAGG
CAGCGAGGGCGCTTTTATGGACGACGACAATGACACGGCCGGACATTGCG
AGCCCAGTACGCGCTATCGCGAGGTTCTGCAAAAACCCTGGGTCGGCGCA
TAAGAGGACAGTGATGAAGGTCATGTAG
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