mRNA_H-elongata_contig165388.4117.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig165388.4117.1
Unique NamemRNA_H-elongata_contig165388.4117.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig165388.4117.1 vs. uniprot
Match: A0A6H5KX02_9PHAE (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KX02_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 2.560e-69
Identity = 99/121 (81.82%), Postives = 114/121 (94.21%), Query Frame = 1
Query:    1 KVFTTDGGVKYIVLKEGEGPLAQDGDFCVVEFTGFLPDGRVFDASNSPGRKPVALKLGTGGVIKGWEEVLRVMNAGAQVQMVVPANLAFGDKGICIENGECLVKPGMDVRYDLKLNRIAPT 363
            +VFTTDGGVK+IVLKEG GP+A+DGDFCVVEFTGFLPDG VFDASN+PGRKP+A +LG   VIKGWEEVLR+MNAGA+VQMVVPA++AFGDKGICI+NG+CLVKPGMDVRYDL+L R+APT
Sbjct:   90 RVFTTDGGVKFIVLKEGTGPVARDGDFCVVEFTGFLPDGAVFDASNAPGRKPIAFQLGKRQVIKGWEEVLRLMNAGAEVQMVVPADMAFGDKGICIDNGDCLVKPGMDVRYDLQLKRVAPT 210          
BLAST of mRNA_H-elongata_contig165388.4117.1 vs. uniprot
Match: A0A7S2UZW0_9STRA (Peptidylprolyl isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZW0_9STRA)

HSP 1 Score: 160 bits (404), Expect = 1.380e-47
Identity = 69/120 (57.50%), Postives = 94/120 (78.33%), Query Frame = 1
Query:    1 KVFTTDGGVKYIVLKEGEGPLAQDGDFCVVEFTGFLPDGRVFDASNSPGRKPVALKLGTGGVIKGWEEVLRVMNAGAQVQMVVPANLAFGDKGICIENGECLVKPGMDVRYDLKLNRIAP 360
            KV  TDGGVK++ +K+G GP  + GD+C+V++ G+L DGR+FD+S  PGRKP+A K G   VI GWEEVL  M AG +V+MVVPA+LA+G KGIC+E+GECL++P  +++YDL L R+AP
Sbjct:   67 KVIETDGGVKFVEVKKGNGPRPRRGDYCIVDYVGYLSDGRIFDSSTGPGRKPLAFKFGGKQVIPGWEEVLPYMKAGGEVKMVVPASLAYGSKGICVEDGECLIQPDEELKYDLTLKRVAP 186          
BLAST of mRNA_H-elongata_contig165388.4117.1 vs. uniprot
Match: A0A6S9M8W0_HETAK (Peptidylprolyl isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9M8W0_HETAK)

HSP 1 Score: 158 bits (399), Expect = 8.180e-47
Identity = 68/119 (57.14%), Postives = 95/119 (79.83%), Query Frame = 1
Query:    1 KVFTTDGGVKYIVLKEGEGPLAQDGDFCVVEFTGFLPDGRVFDASNSPGRKPVALKLGTGGVIKGWEEVLRVMNAGAQVQMVVPANLAFGDKGICIENGECLVKPGMDVRYDLKLNRIA 357
            ++ TT GGVK+I +K+G GP  + GD C+V++TG+LPD  VFD+S++PGRKP+A KLG   VI GWEEVL  M+ GA+VQ VVPA LA+G KG+C+++GECL+KP  D+++D+KL R+A
Sbjct:   68 EIETTPGGVKFIFIKQGSGPNPRKGDICLVDYTGYLPDNTVFDSSDAPGRKPLAFKLGARQVIPGWEEVLPYMSVGAEVQAVVPAKLAYGSKGVCLDSGECLIKPDTDLKFDIKLKRVA 186          
BLAST of mRNA_H-elongata_contig165388.4117.1 vs. uniprot
Match: A0A835Z9V0_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9V0_9STRA)

HSP 1 Score: 125 bits (315), Expect = 3.540e-34
Identity = 55/121 (45.45%), Postives = 82/121 (67.77%), Query Frame = 1
Query:    1 KVFTTDGGVKYIVLKEGEGPLAQDGDFCVVEFTGFLPDGRVFDASNSP--GRKPVALKLGTGGVIKGWEEVLRVMNAGAQVQMVVPANLAFGDKGICIENGECLVKPGMDVRYDLKLNRIA 357
            KV+ TD G+ Y+V KEG GP  +DGD   +++ G+L +G+ FD ++    GRKP   KLG   VI  WEE++R MN GA+  +VVPA L +GDKG+C+ +GECLV P   +++ + L+++A
Sbjct:   60 KVYETDNGILYVVRKEGSGPRPRDGDLVAIKYIGYLNNGKAFDINDGSVAGRKPTVFKLGAKQVIPAWEEIVRYMNPGAEYNIVVPAKLGYGDKGVCVGDGECLVPPNETLKFTIILDKVA 180          
BLAST of mRNA_H-elongata_contig165388.4117.1 vs. uniprot
Match: A0A7S1TJB1_9RHOD (Peptidylprolyl isomerase n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TJB1_9RHOD)

HSP 1 Score: 125 bits (313), Expect = 1.100e-33
Identity = 57/120 (47.50%), Postives = 79/120 (65.83%), Query Frame = 1
Query:    1 KVFTTDGGVKYIVLKEGEGPLAQDGDFCVVEFTGFLPDGRVFDASNSPGRKPVALKLGTGGVIKGWEEVLRVMNAGAQVQMVVPANLAFGDKGICIENGECLVKPGMDVRYDLKLNRIAP 360
            K   T  G++Y  +  G G   Q+GD  VV++ G+L +G+VFD S SPGRKP+A  LG   VI  WEE L  M +G   +++VP +LA+GD+G+C+ +GECL+ P   + YDLKL RIAP
Sbjct:   77 KFVKTSSGLRYADVVTGSGSSPQEGDIVVVDYVGYLSNGQVFDNSKSPGRKPLAFPLGQRKVIPAWEEALSTMKSGGTRKIIVPPSLAYGDRGVCVPSGECLIPPNETLEYDLKLLRIAP 196          
BLAST of mRNA_H-elongata_contig165388.4117.1 vs. uniprot
Match: W7U710_9STRA (Peptidylprolyl isomerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U710_9STRA)

HSP 1 Score: 124 bits (311), Expect = 3.380e-33
Identity = 57/119 (47.90%), Postives = 81/119 (68.07%), Query Frame = 1
Query:    1 KVFTTDGGVKYIVLKEGEGPLAQDGDFCVVEFTGFLPDGRVFDASNSPGRKPVALKLGTGGVIKGWEEVLRVMNAGAQVQMVVPANLAFGDKGICIENGECLVKPGMDVRYDLKLNRIA 357
            K+  T  GVKY+ +K GEG   + GD+ ++ + G L DG +FD  + PG+KP+A K+G   VI G EE L  M AG + Q++VPA+LAFG+KG+C E GECLV P  +V+Y++ L R+A
Sbjct:   93 KIRETPNGVKYVDVKVGEGESPRGGDYVIITYIGQLSDGTIFDGLHGPGKKPLAFKIGAKQVIPGLEEALLSMQAGGERQLLVPADLAFGEKGVCTEKGECLVPPNTNVKYNVILKRVA 211          
BLAST of mRNA_H-elongata_contig165388.4117.1 vs. uniprot
Match: A0A7S3NK27_9STRA (Peptidylprolyl isomerase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NK27_9STRA)

HSP 1 Score: 123 bits (309), Expect = 4.550e-33
Identity = 60/129 (46.51%), Postives = 84/129 (65.12%), Query Frame = 1
Query:    4 VFTTDGGVKYIVLKEGEGPLAQ-----------DGDFCVVEFTGFLPDGRVFDASNSPGRKPVALKLGTGGVIKGWEEVLRVMNAGAQVQMVVPANLAFGDKGICIENGECLVKPGMDVRYDLKLNRIA 357
            + TT GGVKY +LKEG  P A             G FC+V++TGFLP G VFD++ S GRKP+A KLG   VI G E+++  M  G +VQ ++PA LA+G+KG+C E+ +CL+ P  D++Y ++L R A
Sbjct:   68 IRTTKGGVKYRILKEGACPTADPLGLAGSCTPTQGSFCIVDYTGFLPSGAVFDSTESKGRKPLAFKLGEKQVIVGIEQLVSQMKPGEEVQALIPAELAYGEKGVCTEDKDCLIPPNTDLKYFVRLVRTA 196          
BLAST of mRNA_H-elongata_contig165388.4117.1 vs. uniprot
Match: A0A7S1FTT1_9STRA (Peptidylprolyl isomerase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FTT1_9STRA)

HSP 1 Score: 123 bits (308), Expect = 5.040e-33
Identity = 56/119 (47.06%), Postives = 82/119 (68.91%), Query Frame = 1
Query:    4 VFTTDGGVKYIVLKEGEGPLAQDGDFCVVEFTGFLPDGRVFDASNSPG-RKPVALKLGTGGVIKGWEEVLRVMNAGAQVQMVVPANLAFGDKGICIENGECLVKPGMDVRYDLKLNRIA 357
            ++ T  GVKY V  E  GP+   GDF VVE+TG+L +G++FDA+++ G R  +  KL TG VI G +E++  M  G +VQ ++P  LA+GDKG+C+ENGECL+KPG  + YD+ L + +
Sbjct:   69 IYNTPKGVKYAVTAESNGPVPLPGDFVVVEYTGYLSNGQIFDATHATGKRNELLFKLNTGSVIPGLDEMVGEMKVGQKVQAIIPPALAYGDKGVCLENGECLIKPGSTLVYDILLKKTS 187          
BLAST of mRNA_H-elongata_contig165388.4117.1 vs. uniprot
Match: A0A8J2WS77_9STRA (Peptidylprolyl isomerase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WS77_9STRA)

HSP 1 Score: 122 bits (307), Expect = 6.050e-33
Identity = 55/129 (42.64%), Postives = 87/129 (67.44%), Query Frame = 1
Query:    4 VFTTDGGVKYIVLKEGEGPLAQDG-----------DFCVVEFTGFLPDGRVFDASNSPGRKPVALKLGTGGVIKGWEEVLRVMNAGAQVQMVVPANLAFGDKGICIENGECLVKPGMDVRYDLKLNRIA 357
            V TT GG KY+++KEG  PL                +  +++TGFLP+G+VFD++   G KP++ +LG   V+ G E+V+  M  G +VQ ++PA+LA+GDKG+C ++GECL+KPG +++Y ++LNR+A
Sbjct:   53 VRTTKGGAKYVIVKEGSCPLIDPSGALGSCYPRPESYITIDYTGFLPNGQVFDSTEKKGGKPLSFRLGERQVVPGIEQVVAQMKPGEEVQALLPASLAYGDKGVCTDDGECLIKPGTNLKYFIRLNRVA 181          
BLAST of mRNA_H-elongata_contig165388.4117.1 vs. uniprot
Match: A0A7S2FVU9_9STRA (Peptidylprolyl isomerase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FVU9_9STRA)

HSP 1 Score: 120 bits (302), Expect = 6.730e-32
Identity = 57/129 (44.19%), Postives = 83/129 (64.34%), Query Frame = 1
Query:    4 VFTTDGGVKYIVLKEGEGPLA-----------QDGDFCVVEFTGFLPDGRVFDASNSPGRKPVALKLGTGGVIKGWEEVLRVMNAGAQVQMVVPANLAFGDKGICIENGECLVKPGMDVRYDLKLNRIA 357
            + TT GGVKY V+K+G+ P A           + G  C+++FTGFLPDG VFD++   G KP+A +LG   VI G E+V+  M  G +VQ  +P+ LA+G KG+C  +GECL+ P  D++Y ++L R+A
Sbjct:   78 IRTTKGGVKYAVVKDGKCPTADPTGLAGSCDPKTGSLCIIDFTGFLPDGSVFDSTERKGGKPLAFRLGEKQVIIGIEQVVSQMRTGEEVQAKIPSELAYGTKGVCTADGECLIPPNTDLKYFIRLKRVA 206          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165388.4117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KX02_9PHAE2.560e-6981.82Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A7S2UZW0_9STRA1.380e-4757.50Peptidylprolyl isomerase n=1 Tax=Fibrocapsa japoni... [more]
A0A6S9M8W0_HETAK8.180e-4757.14Peptidylprolyl isomerase n=1 Tax=Heterosigma akash... [more]
A0A835Z9V0_9STRA3.540e-3445.45Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
A0A7S1TJB1_9RHOD1.100e-3347.50Peptidylprolyl isomerase n=1 Tax=Compsopogon caeru... [more]
W7U710_9STRA3.380e-3347.90Peptidylprolyl isomerase n=2 Tax=Monodopsidaceae T... [more]
A0A7S3NK27_9STRA4.550e-3346.51Peptidylprolyl isomerase n=1 Tax=Aureoumbra lagune... [more]
A0A7S1FTT1_9STRA5.040e-3347.06Peptidylprolyl isomerase n=1 Tax=Corethron hystrix... [more]
A0A8J2WS77_9STRA6.050e-3342.64Peptidylprolyl isomerase n=1 Tax=Pelagomonas calce... [more]
A0A7S2FVU9_9STRA6.730e-3244.19Peptidylprolyl isomerase n=1 Tax=Dictyocha speculu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig165388contigH-elongata_contig165388:325..1290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score219.2
Seed ortholog evalue1.1e-54
Seed eggNOG ortholog2880.D7FQE6
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0006464,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009987,GO:0016020,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0031976,GO:0031984,GO:0034357,GO:0036211,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0061077,GO:0071704,GO:0097159,GO:0140096,GO:1901363,GO:1901564
EggNOG free text desc.histone peptidyl-prolyl isomerization
EggNOG OGsCOG0545@1,KOG0552@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFKBP domain protein
Ec32 orthologEc-01_006400.1
Exons3
Model size369
Cds size369
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig165388.4117.1prot_H-elongata_contig165388.4117.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig165388 325..1290 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929967.8376768-CDS-H-elongata_contig165388:324..4251622929967.8376768-CDS-H-elongata_contig165388:324..425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165388 325..425 +
1691679227.8345273-CDS-H-elongata_contig165388:324..4251691679227.8345273-CDS-H-elongata_contig165388:324..425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165388 325..425 +
1622929967.8589542-CDS-H-elongata_contig165388:771..8921622929967.8589542-CDS-H-elongata_contig165388:771..892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165388 772..892 +
1691679227.8444345-CDS-H-elongata_contig165388:771..8921691679227.8444345-CDS-H-elongata_contig165388:771..892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165388 772..892 +
1622929967.8734293-CDS-H-elongata_contig165388:1143..12901622929967.8734293-CDS-H-elongata_contig165388:1143..1290Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165388 1144..1290 +
1691679227.8543887-CDS-H-elongata_contig165388:1143..12901691679227.8543887-CDS-H-elongata_contig165388:1143..1290Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165388 1144..1290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig165388.4117.1

>prot_H-elongata_contig165388.4117.1 ID=prot_H-elongata_contig165388.4117.1|Name=mRNA_H-elongata_contig165388.4117.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp
KVFTTDGGVKYIVLKEGEGPLAQDGDFCVVEFTGFLPDGRVFDASNSPGR
KPVALKLGTGGVIKGWEEVLRVMNAGAQVQMVVPANLAFGDKGICIENGE
CLVKPGMDVRYDLKLNRIAPTF*
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mRNA from alignment at H-elongata_contig165388:325..1290+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig165388.4117.1 ID=mRNA_H-elongata_contig165388.4117.1|Name=mRNA_H-elongata_contig165388.4117.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=966bp|location=Sequence derived from alignment at H-elongata_contig165388:325..1290+ (Himanthalia elongata Himel1 dioecious)
AAAGTTTTCACCACAGATGGCGGCGTTAAGTACATTGTTCTGAAAGAAGG CGAGGGGCCCTTGGCACAAGACGGAGACTTCTGTGTCGTGGAATTCACCG GGTAAGGGTGCAATATATTAGAGCTTGCTACATGTTTGTCCAGCGCGCTT GTAGTTTGAAATAGTGTCCAGTGGTCAAGCACCCCACTTCTCGGATGGCC ATAGTATAATCTCACGGGGGTAAGTTTAATGCTCATTTCATGTATTTGCC ATCTCAACATGTTTGTATGCCTTCGCCCCACATTACATGCTAACCATCGA TAACACGGGGTACGTCCATTAGGTTTCGTTGCTACCCACACTCTCATGTA ATGTAATTCCGATGGTTTGACGCTCGGAACGGTACGGGTCTCATTCGCGG AAGTTGGGTCATCTGCGGTGTCACCCTTCCTTATCTTGTTGGCACAGGTT TCTCCCGGACGGGCGCGTGTTTGACGCCAGCAACTCTCCAGGGCGCAAGC CTGTCGCTTTAAAGCTTGGCACGGGAGGGGTGATCAAGGGTTGGGAGGAA GTTTTGCGCGTGATGAACGTGAGACGGGTCGCCTACCCCTTCAGTTGATC AAGTATTTTCAAGCATTAGGTTCCATGGTTGCCCCGTATGTACGATTTAA CCTATGATAATATGTGGTACAGTATAGCAATAAAACGAGCACGCTCCCCT CATGTTTTCCTAGGGATTTTTTATTTATTTATTTTGTCACTTGAAATACG CCGCGCGACCGATGTACACTTCATATCCCAAATACATTCTTATCAATTGC CTGATGTTCGCTGTGGAAGGCTGGTGCCCAGGTACAGATGGTTGTGCCAG CAAACTTGGCCTTCGGTGACAAGGGTATTTGCATCGAAAATGGCGAATGC CTCGTCAAGCCAGGCATGGATGTGCGCTACGACCTCAAGCTCAACCGCAT CGCTCCGACCTTCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig165388:325..1290+

>mRNA_H-elongata_contig165388.4117.1 ID=mRNA_H-elongata_contig165388.4117.1|Name=mRNA_H-elongata_contig165388.4117.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at H-elongata_contig165388:325..1290+ (Himanthalia elongata Himel1 dioecious)
AAAGTTTTCACCACAGATGGCGGCGTTAAGTACATTGTTCTGAAAGAAGG
CGAGGGGCCCTTGGCACAAGACGGAGACTTCTGTGTCGTGGAATTCACCG
GAAAGTTTTCACCACAGATGGCGGCGTTAAGTACATTGTTCTGAAAGAAG
GCGAGGGGCCCTTGGCACAAGACGGAGACTTCTGTGTCGTGGAATTCACC
GGGTTTCTCCCGGACGGGCGCGTGTTTGACGCCAGCAACTCTCCAGGGCG
CAAGCCTGTCGCTTTAAAGCTTGGCACGGGAGGGGTGATCAAGGGTTGGG
AGGAAGTTTTGCGCGTGATGAACGTTTCTCCCGGACGGGCGCGTGTTTGA
CGCCAGCAACTCTCCAGGGCGCAAGCCTGTCGCTTTAAAGCTTGGCACGG
GAGGGGTGATCAAGGGTTGGGAGGAAGTTTTGCGCGTGATGAACGCTGGT
GCCCAGGTACAGATGGTTGTGCCAGCAAACTTGGCCTTCGGTGACAAGGG
TATTTGCATCGAAAATGGCGAATGCCTCGTCAAGCCAGGCATGGATGTGC
GCTACGACCTCAAGCTCAACCGCATCGCTCCGACCTTCTAAGCTGGTGCC
CAGGTACAGATGGTTGTGCCAGCAAACTTGGCCTTCGGTGACAAGGGTAT
TTGCATCGAAAATGGCGAATGCCTCGTCAAGCCAGGCATGGATGTGCGCT
ACGACCTCAAGCTCAACCGCATCGCTCCGACCTTCTAA
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