mRNA_H-elongata_contig165206.4105.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig165206.4105.1
Unique NamemRNA_H-elongata_contig165206.4105.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig165206.4105.1 vs. uniprot
Match: D8LTV6_ECTSI (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTV6_ECTSI)

HSP 1 Score: 244 bits (624), Expect = 2.890e-78
Identity = 117/147 (79.59%), Postives = 132/147 (89.80%), Query Frame = 1
Query:    1 LENLPPVGHDAYDVGTVERALMAAYKSADDYVTTKTPYANEGSCAVSVTVHCDRQGKASLISCNLGDSSRAVLSRGGKALDLTEDHKPNAPKELERIYRHDGMVTWEGLECSEGLQIEGTGVYRINGNLAVARAIGDIDYRPWVSGE 441
            +++LPP G D Y + TV+ AL +A+K ADDYV T+TPY NEGSCAVSVT+HCDR+GK S+ISCNLGDS RAVLSRGGKALDLTEDHKPNAP+E+ERIYRHDGMVTWEG ECS GLQIEGTGVYRING+LAVARAIGDIDYRPW+S E
Sbjct:   90 MDHLPP-GDDVYGLETVQEALRSAFKCADDYVITQTPYGNEGSCAVSVTIHCDREGKVSIISCNLGDS-RAVLSRGGKALDLTEDHKPNAPREMERIYRHDGMVTWEGFECSRGLQIEGTGVYRINGSLAVARAIGDIDYRPWLSAE 234          
BLAST of mRNA_H-elongata_contig165206.4105.1 vs. uniprot
Match: A0A6H5KKR9_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKR9_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 2.140e-74
Identity = 115/147 (78.23%), Postives = 131/147 (89.12%), Query Frame = 1
Query:    1 LENLPPVGHDAYDVGTVERALMAAYKSADDYVTTKTPYANEGSCAVSVTVHCDRQGKASLISCNLGDSSRAVLSRGGKALDLTEDHKPNAPKELERIYRHDGMVTWEGLECSEGLQIEGTGVYRINGNLAVARAIGDIDYRPWVSGE 441
            +++LPP G D Y + TV+ AL +A+K ADDYV T+TPY NEGSCAVSVT+HCD++GK S+ISCNLGDS RAVLSRGGKALDLTEDHKPNAP+E+ERIYRH GMVTWEG ECS GLQIEGTGVYRING+LAVARAIGDIDYRPW+S E
Sbjct:  284 MDHLPP-GDDVYGLETVQEALRSAFKCADDYVITQTPYGNEGSCAVSVTIHCDKEGKVSIISCNLGDS-RAVLSRGGKALDLTEDHKPNAPREMERIYRHRGMVTWEGFECSRGLQIEGTGVYRINGSLAVARAIGDIDYRPWLSAE 428          
BLAST of mRNA_H-elongata_contig165206.4105.1 vs. uniprot
Match: A0A835Z7U5_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7U5_9STRA)

HSP 1 Score: 128 bits (322), Expect = 6.100e-33
Identity = 73/132 (55.30%), Postives = 90/132 (68.18%), Query Frame = 1
Query:   55 RALMAAYKSADDYVTTKTPYANEGSCAVSVTVH---CDRQGKASLISCNLGDSSRAVLSRGGKALDLTEDHKPNAPKELERIYRHDGMVTWEGLECSEGLQIEGTGVYRINGNLAVARAIGDIDYRPWVSGE 441
            +AL AA+K+ DD V     ++ +GS AV+V +H       G  S+I+ N+GDS RAVL R GKA+++T+DHKPNA  EL+RI    G V W G    EG  IEGTGVYRINGNLAVARAIGD   RP+VSGE
Sbjct:  125 QALKAAFKTVDDEVLKVRHWSYQGSTAVAVVIHPTVAGGNGNCSIITANVGDS-RAVLCRRGKAVEITKDHKPNATAELDRIEALGGNVRWFGFIDPEGRPIEGTGVYRINGNLAVARAIGDSSERPFVSGE 255          
BLAST of mRNA_H-elongata_contig165206.4105.1 vs. uniprot
Match: A0A8K1C3Y4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3Y4_PYTOL)

HSP 1 Score: 115 bits (288), Expect = 1.490e-28
Identity = 68/143 (47.55%), Postives = 86/143 (60.14%), Query Frame = 1
Query:   13 PPVGHDAYDVGTVERALMAAYKSADDYVTTKTPYANEGSCAVSVTVHCDRQGKASLISCNLGDSSRAVLSRGGKALDLTEDHKPNAPKELERIYRHDGMVTWEGLECSEGLQIEGTGVYRINGNLAVARAIGDIDYRPWVSGE 441
            P  G+       +E  L  A    D  V  ++ +  +GS AV V +H D     ++ S N+GDS RAV+SRGG+ ++LT DHKPN P EL RI +  G V W G   ++G  IE  G YRINGNLAVARAIGD D RP+VSGE
Sbjct:   49 PEEGNHTTSRSALEDMLRQAVDRVDADVIARSEWKYQGSTAVGVLLHGD-----AIFSFNVGDS-RAVMSRGGQVVELTRDHKPNDPIELTRIQKLGGSVKWHGYVDAQGEPIEPYGAYRINGNLAVARAIGDRDLRPYVSGE 185          
BLAST of mRNA_H-elongata_contig165206.4105.1 vs. uniprot
Match: A0A4D9DDA2_9STRA (PPM-type phosphatase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDA2_9STRA)

HSP 1 Score: 117 bits (294), Expect = 6.270e-28
Identity = 72/145 (49.66%), Postives = 88/145 (60.69%), Query Frame = 1
Query:   49 VERALMAAYKSADDYVTTKTPYANEGSCAVSVTVHCD------------RQG--KASLISCNLGDSSRAVLSRGGKALDLTEDHKPNAPKELERIYRHDGMVTWEGLECSEGLQIEGTGVYRINGNLAVARAIGDIDYRPWVSGE 441
            V  AL  A++  D+ V     +A  GS AV V +H +            R G  K +LI+ N+GDS RAVLSR G+A+DLT+DHKPN P ELER+    G V W GL   +G  +EG GVYRINGNLAVARA GD   RP+VS E
Sbjct:  380 VTEALATAFRVVDEAVVKVRHWAYMGSTAVVVVIHAEEAKAKEGVEEGGRAGALKRTLIAANVGDS-RAVLSRRGQAVDLTDDHKPNKPSELERVKALGGTVRWYGLLEQDGSPMEGMGVYRINGNLAVARAFGDRSERPFVSSE 523          
BLAST of mRNA_H-elongata_contig165206.4105.1 vs. uniprot
Match: A0A6G0XM49_9STRA (PPM-type phosphatase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XM49_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.940e-26
Identity = 64/138 (46.38%), Postives = 83/138 (60.14%), Query Frame = 1
Query:   28 DAYDVGTVERALMAAYKSADDYVTTKTPYANEGSCAVSVTVHCDRQGKASLISCNLGDSSRAVLSRGGKALDLTEDHKPNAPKELERIYRHDGMVTWEGLECSEGLQIEGTGVYRINGNLAVARAIGDIDYRPWVSGE 441
            D + +  +E++L  A++ AD  +  +  +  +GS A +V +  D      + S N+GDS RAVL R G+AL+LT DHKPN P E  RI R  G V W GL   +G  I   G YRIN NLAVARA GD D RP+VSGE
Sbjct:  151 DTWSIEDIEQSLRLAFREADAAILDRREWLTQGSTATAVLLIDDL-----IWSMNVGDS-RAVLCRNGRALNLTRDHKPNDPIERARIERCGGRVQWHGLRDPKGQPIPDMGAYRINANLAVARAFGDSDQRPYVSGE 282          
BLAST of mRNA_H-elongata_contig165206.4105.1 vs. uniprot
Match: A0A7S2CN51_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CN51_9STRA)

HSP 1 Score: 101 bits (252), Expect = 4.150e-25
Identity = 49/87 (56.32%), Postives = 64/87 (73.56%), Query Frame = 1
Query:  181 ISCNLGDSSRAVLSRGGKALDLTEDHKPNAPKELERIYRHDGMVTWEGLECSEGLQIEGTGVYRINGNLAVARAIGDIDYRPWVSGE 441
            ++ N+GDS R VLSR G+A+DLT DHKPN P EL RI    G V W G   ++G  ++GTGVYR+NGNLAV+RA+GD   +P++SGE
Sbjct:    1 VTANVGDS-RVVLSRRGQAVDLTRDHKPNCPSELARIQALGGNVHWHGFYHADGRPMDGTGVYRVNGNLAVSRAVGDSTEKPFISGE 86          
BLAST of mRNA_H-elongata_contig165206.4105.1 vs. uniprot
Match: A0A024TM43_9STRA (PPM-type phosphatase domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TM43_9STRA)

HSP 1 Score: 108 bits (269), Expect = 5.440e-25
Identity = 64/147 (43.54%), Postives = 86/147 (58.50%), Query Frame = 1
Query:    1 LENLPPVGHDAYDVGTVERALMAAYKSADDYVTTKTPYANEGSCAVSVTVHCDRQGKASLISCNLGDSSRAVLSRGGKALDLTEDHKPNAPKELERIYRHDGMVTWEGLECSEGLQIEGTGVYRINGNLAVARAIGDIDYRPWVSGE 441
            L NL P   D +++  +E +L  A+++ D  +  +  +  +GS A +V +  D      + S N+GDS RAVL R G+A++LT DHKPN P E  R+ +  G V W GL    G  I   G YRIN NLAVARA GD D RP+VSGE
Sbjct:  145 LANLGPA-KDTWNLDEIETSLRDAFRTVDAVILERREWIAQGSTATAVLLMDDL-----IWSMNVGDS-RAVLCRNGRAVNLTRDHKPNDPMERSRVEKAGGRVQWHGLRDPHGRPIVDMGAYRINSNLAVARAFGDGDQRPYVSGE 284          
BLAST of mRNA_H-elongata_contig165206.4105.1 vs. uniprot
Match: A0A2D4CJK3_PYTIN (PPM-type phosphatase domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CJK3_PYTIN)

HSP 1 Score: 105 bits (261), Expect = 7.510e-25
Identity = 61/131 (46.56%), Postives = 80/131 (61.07%), Query Frame = 1
Query:   49 VERALMAAYKSADDYVTTKTPYANEGSCAVSVTVHCDRQGKASLISCNLGDSSRAVLSRGGKALDLTEDHKPNAPKELERIYRHDGMVTWEGLECSEGLQIEGTGVYRINGNLAVARAIGDIDYRPWVSGE 441
            VE+ L  A    D  V  +  +  +GS AV V ++ D     S+ S N+GDS RAV+SRGG+ ++LT DHKPN P E +RI    G V W G   ++G+ IE  G  R+NGN AVARAIGD D RP+V G+
Sbjct:   61 VEKLLREAVAKVDADVVARPEWKYQGSTAVGVLLYDD-----SIFSINVGDS-RAVMSRGGQVVELTRDHKPNDPVERQRIEALGGNVRWYGYVDAQGVPIEPYGAXRVNGNXAVARAIGDSDLRPFVXGD 185          
BLAST of mRNA_H-elongata_contig165206.4105.1 vs. uniprot
Match: A0A485L3M8_9STRA (Aste57867_15235 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L3M8_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.650e-24
Identity = 61/137 (44.53%), Postives = 82/137 (59.85%), Query Frame = 1
Query:   28 DAYDVGTVERALMAAYKSADDYVTTKTPYANEGSCAVSVTVHCDRQGKASLISCNLGDSSRAVLSRGGKALDLTEDHKPNAPKELERIYRHDGMVTWEGLECSEGLQIEGTGVYRINGNLAVARAIGDIDYRPWVSG 438
            D + +  ++  L AA+K+AD  +  +  +  +GS A +V +  D      + S N+GDS RAVL R G+AL+LT DHKPN P+E +RI    G V W GL  + G  +   G YRIN NLAVARA GD D RP+V G
Sbjct:  149 DTWSLDEIDARLRAAFKAADTAILARKEWREQGSTATAVFLIDDL-----IWSMNVGDS-RAVLCRDGRALNLTRDHKPNDPEERQRIEDAGGKVRWHGLRDAAGKPVVDMGAYRINSNLAVARAFGDGDQRPYVCG 279          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165206.4105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTV6_ECTSI2.890e-7879.59PPM-type phosphatase domain-containing protein n=1... [more]
A0A6H5KKR9_9PHAE2.140e-7478.23PPM-type phosphatase domain-containing protein n=1... [more]
A0A835Z7U5_9STRA6.100e-3355.30Phosphatase 2C-like domain-containing protein n=1 ... [more]
A0A8K1C3Y4_PYTOL1.490e-2847.55Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A4D9DDA2_9STRA6.270e-2849.66PPM-type phosphatase domain-containing protein n=2... [more]
A0A6G0XM49_9STRA2.940e-2646.38PPM-type phosphatase domain-containing protein n=1... [more]
A0A7S2CN51_9STRA4.150e-2556.32Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A024TM43_9STRA5.440e-2543.54PPM-type phosphatase domain-containing protein n=2... [more]
A0A2D4CJK3_PYTIN7.510e-2546.56PPM-type phosphatase domain-containing protein (Fr... [more]
A0A485L3M8_9STRA1.650e-2444.53Aste57867_15235 protein n=1 Tax=Aphanomyces stella... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig165206contigH-elongata_contig165206:80..1177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score247.7
Seed ortholog evalue3.4e-63
Seed eggNOG ortholog2880.D8LTV6
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein phosphatase 2C (PP2C)-like domain
Ec32 orthologEc-28_002580.1
Exons3
Model size441
Cds size441
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig165206.4105.1prot_H-elongata_contig165206.4105.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig165206 80..1177 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929966.8755126-CDS-H-elongata_contig165206:79..2851622929966.8755126-CDS-H-elongata_contig165206:79..285Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165206 80..285 +
1691679227.4904766-CDS-H-elongata_contig165206:79..2851691679227.4904766-CDS-H-elongata_contig165206:79..285Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165206 80..285 +
1622929966.8904371-CDS-H-elongata_contig165206:740..8301622929966.8904371-CDS-H-elongata_contig165206:740..830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165206 741..830 +
1691679227.5054445-CDS-H-elongata_contig165206:740..8301691679227.5054445-CDS-H-elongata_contig165206:740..830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165206 741..830 +
1622929966.90404-CDS-H-elongata_contig165206:1032..11771622929966.90404-CDS-H-elongata_contig165206:1032..1177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165206 1033..1177 +
1691679227.5185728-CDS-H-elongata_contig165206:1032..11771691679227.5185728-CDS-H-elongata_contig165206:1032..1177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165206 1033..1177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig165206.4105.1

>prot_H-elongata_contig165206.4105.1 ID=prot_H-elongata_contig165206.4105.1|Name=mRNA_H-elongata_contig165206.4105.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp
LENLPPVGHDAYDVGTVERALMAAYKSADDYVTTKTPYANEGSCAVSVTV
HCDRQGKASLISCNLGDSSRAVLSRGGKALDLTEDHKPNAPKELERIYRH
DGMVTWEGLECSEGLQIEGTGVYRINGNLAVARAIGDIDYRPWVSGE
back to top

mRNA from alignment at H-elongata_contig165206:80..1177+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig165206.4105.1 ID=mRNA_H-elongata_contig165206.4105.1|Name=mRNA_H-elongata_contig165206.4105.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1098bp|location=Sequence derived from alignment at H-elongata_contig165206:80..1177+ (Himanthalia elongata Himel1 dioecious)
TTGGAAAACCTTCCACCGGTCGGACACGACGCCTATGATGTTGGCACGGT GGAGCGGGCGCTGATGGCGGCTTACAAGAGCGCGGACGACTATGTTACTA CGAAGACCCCCTACGCCAACGAGGGGAGCTGCGCTGTCTCTGTGACGGTG CACTGCGATCGCCAGGGGAAAGCCTCCCTCATCTCGTGCAACCTGGGAGA CTCAAGGTATGCTCGAAAATGGAGGAAGAAGAGGGGAGACCGTAGTTTCT TACTGAAGTGTTGCGGGCAGGACTAAGAGAAGCAGAGGACGATGAACGGG TTTTCTCCTGTCGTTTACCCTTGAAGCGGTAGTCGGATTTATTTTGGTAT CATTAGCTGCTGACTCGCGGGTCGTTTATTTATTTTTCTTCCTTGCTTTT GCTTGGGCGCCAGTTTTGTTAGGCAAGCGCCATATCGTTTAAAACGGATT TTACCGCTGTTAATTGTGTGTAACGGATAATCGGATTTTATCGCTGTTGT TGTATTTGTGTTTGTGTTCTGAGTATTTTTTTTTTTGTAAAGGGGGTGAA TTGGGGTGGTACTCCCGACATGAAGCTGCGCGCCCCTTCCAGAGGATCCC CAACCAACCCCTTGACAAGTTATTGCCCTTCCGTGGGTGGATGTCTTGTT CGGCTGGAGAGCAGGGCGGTGCTCAGCCGTGGAGGAAAAGCCTTAGACCT AACCGAAGATCACAAGCCCAACGCGCCGAAAGAGCTGGAGCGCATCTACA GGTAAAGCGCGGTATGGTATCTTTCGTTTAGTTTCCCCTGCGATGAGGGA GATGGGAAGGGCGGTTAAAGCCAAAACAACAAGCGCTGTGGGGGATCGGT CCCGACGGCTAATTTTTGAAGAAGACGAAAAACAAAAAAGCGATTTTTCC CACATCGTCTCAAGCCCCGCGACCCTACGCCGCCTCCGGTCTTTTCTGTG CAGACACGATGGAATGGTGACGTGGGAGGGTTTGGAGTGCTCGGAAGGCT TGCAGATAGAGGGAACTGGGGTATACCGCATCAACGGAAATCTGGCCGTC GCGAGGGCGATCGGGGACATTGACTACCGCCCTTGGGTCTCTGGTGAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig165206:80..1177+

>mRNA_H-elongata_contig165206.4105.1 ID=mRNA_H-elongata_contig165206.4105.1|Name=mRNA_H-elongata_contig165206.4105.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig165206:80..1177+ (Himanthalia elongata Himel1 dioecious)
TTGGAAAACCTTCCACCGGTCGGACACGACGCCTATGATGTTGGCACGGT
GGAGCGGGCGCTGATGGCGGCTTACAAGAGCGCGGACGACTATGTTACTA
CGAAGACCCCCTACGCCAACGAGGGGAGCTGCGCTGTCTCTGTGACGGTG
CACTGCGATCGCCAGGGGAAAGCCTCCCTCATCTCGTGCAACCTGGGAGA
CTCAAGTTGGAAAACCTTCCACCGGTCGGACACGACGCCTATGATGTTGG
CACGGTGGAGCGGGCGCTGATGGCGGCTTACAAGAGCGCGGACGACTATG
TTACTACGAAGACCCCCTACGCCAACGAGGGGAGCTGCGCTGTCTCTGTG
ACGGTGCACTGCGATCGCCAGGGGAAAGCCTCCCTCATCTCGTGCAACCT
GGGAGACTCAAGCAGGGCGGTGCTCAGCCGTGGAGGAAAAGCCTTAGACC
TAACCGAAGATCACAAGCCCAACGCGCCGAAAGAGCTGGAGCGCATCTAC
AGCAGGGCGGTGCTCAGCCGTGGAGGAAAAGCCTTAGACCTAACCGAAGA
TCACAAGCCCAACGCGCCGAAAGAGCTGGAGCGCATCTACAGACACGATG
GAATGGTGACGTGGGAGGGTTTGGAGTGCTCGGAAGGCTTGCAGATAGAG
GGAACTGGGGTATACCGCATCAACGGAAATCTGGCCGTCGCGAGGGCGAT
CGGGGACATTGACTACCGCCCTTGGGTCTCTGGTGAGACACGATGGAATG
GTGACGTGGGAGGGTTTGGAGTGCTCGGAAGGCTTGCAGATAGAGGGAAC
TGGGGTATACCGCATCAACGGAAATCTGGCCGTCGCGAGGGCGATCGGGG
ACATTGACTACCGCCCTTGGGTCTCTGGTGAG
back to top