mRNA_H-elongata_contig165095.4102.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig165095.4102.1
Unique NamemRNA_H-elongata_contig165095.4102.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig165095.4102.1 vs. uniprot
Match: A0A097IUN1_9PHAE (Malate dehydrogenase n=5 Tax=Sargassum TaxID=3015 RepID=A0A097IUN1_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 8.940e-25
Identity = 59/88 (67.05%), Postives = 68/88 (77.27%), Query Frame = 1
Query:    1 NNKKVPDTSAVEFFVNGKWIPAALVIPNNAWLGLSSSSQGSG----GAVG--LVEAVRGRGQAVLKARKLSSAMSAANAIAEHLADWL 246
            +N +VPD SAVEFFV+G+W+P   VIP+  WLGL++S  G G    GA G  LVEAVR RG AVL ARKLSSAMSAANAIAEHL+DWL
Sbjct:  205 SNSQVPDVSAVEFFVDGRWVPIESVIPDTTWLGLANSLPGGGSIGGGAEGQSLVEAVRKRGAAVLGARKLSSAMSAANAIAEHLSDWL 292          
BLAST of mRNA_H-elongata_contig165095.4102.1 vs. uniprot
Match: A0A097IUJ7_SCYLO (Malate dehydrogenase n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=A0A097IUJ7_SCYLO)

HSP 1 Score: 102 bits (255), Expect = 5.180e-24
Identity = 61/87 (70.11%), Postives = 68/87 (78.16%), Query Frame = 1
Query:    1 NNKKVPDTSAVEFFVNGKWIPAALVIPNNAWLGLSSSSQG----SGGAV-GLVEAVRGRGQAVLKARKLSSAMSAANAIAEHLADWL 246
            +N +VPD SAVEFFV+ +WIPAA VI + AWL LSS+S G     G AV GL EAVRGRG AVL ARKLSSAMSAANAIA HL+DWL
Sbjct:  219 SNSQVPDASAVEFFVDDRWIPAASVIRDAAWLTLSSNSHGRFDADGEAVLGLAEAVRGRGAAVLDARKLSSAMSAANAIAGHLSDWL 305          
BLAST of mRNA_H-elongata_contig165095.4102.1 vs. uniprot
Match: A0A097IUL1_9PHAE (Malate dehydrogenase n=1 Tax=Scytosiphon dotyi TaxID=180438 RepID=A0A097IUL1_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 7.290e-23
Identity = 59/87 (67.82%), Postives = 67/87 (77.01%), Query Frame = 1
Query:    1 NNKKVPDTSAVEFFVNGKWIPAALVIPNNAWLGLSSSSQ----GSGGAV-GLVEAVRGRGQAVLKARKLSSAMSAANAIAEHLADWL 246
            +N +VPD SAVEFFV+G+W PAA VI + AWL LSS++       G AV GL EAVRGRG AVL ARKLSSAMSAANAIA HL+DWL
Sbjct:  221 SNSQVPDASAVEFFVDGRWTPAASVIRDAAWLTLSSNAHERFDADGEAVLGLAEAVRGRGAAVLGARKLSSAMSAANAIAGHLSDWL 307          
BLAST of mRNA_H-elongata_contig165095.4102.1 vs. uniprot
Match: A0A6H5KVV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV0_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.330e-22
Identity = 59/87 (67.82%), Postives = 64/87 (73.56%), Query Frame = 1
Query:    1 NNKKVPDTSAVEFFVNGKWIPAALVIPNNAWLGLSSSSQ----GSGGAV-GLVEAVRGRGQAVLKARKLSSAMSAANAIAEHLADWL 246
            +N +VPD SAVEF VNG W PA  VI + +WL LS+SS       GG V GL EAVRGRG AVL ARKLSSAMSAANAIA HLADWL
Sbjct:  213 SNSQVPDASAVEFRVNGCWTPAPAVIRDASWLNLSNSSHERFDAEGGVVLGLAEAVRGRGAAVLGARKLSSAMSAANAIASHLADWL 299          
BLAST of mRNA_H-elongata_contig165095.4102.1 vs. uniprot
Match: A0A097IUP1_9PHAE (Malate dehydrogenase n=1 Tax=Colpomenia sinuosa TaxID=87236 RepID=A0A097IUP1_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 3.210e-22
Identity = 57/87 (65.52%), Postives = 64/87 (73.56%), Query Frame = 1
Query:    1 NNKKVPDTSAVEFFVNGKWIPAALVIPNNAWLGLSSSSQGSGGA-----VGLVEAVRGRGQAVLKARKLSSAMSAANAIAEHLADWL 246
            +N +VPD SAVEF V+G+W PAA VI + AWL LSS+S  S  A     +GL E VRGRG AVL ARKLSSAMSAANAIA HL DWL
Sbjct:  219 SNSQVPDASAVEFLVDGRWTPAASVIRDAAWLTLSSNSHESFDADGEPVLGLAEGVRGRGAAVLGARKLSSAMSAANAIASHLKDWL 305          
BLAST of mRNA_H-elongata_contig165095.4102.1 vs. uniprot
Match: A0A097IUP6_SACJA (Malate dehydrogenase n=2 Tax=Saccharina TaxID=309357 RepID=A0A097IUP6_SACJA)

HSP 1 Score: 96.7 bits (239), Expect = 7.640e-22
Identity = 53/87 (60.92%), Postives = 64/87 (73.56%), Query Frame = 1
Query:    1 NNKKVPDTSAVEFFVNGKWIPAALVIPNNAWLGLSSSSQGSGGAV-----GLVEAVRGRGQAVLKARKLSSAMSAANAIAEHLADWL 246
            +N +VPD SAVEF ++G W+PA  VI ++ WL LS+S+   G  +     GL EAVRGRG AVL ARKLSSAMSAANAIA HL+DWL
Sbjct:  209 SNSQVPDASAVEFLIDGSWVPAVSVIGDSGWLDLSTSTPQGGRVLEGEVSGLAEAVRGRGAAVLGARKLSSAMSAANAIAGHLSDWL 295          
BLAST of mRNA_H-elongata_contig165095.4102.1 vs. uniprot
Match: A0A097IUM0_9PHAE (Malate dehydrogenase n=1 Tax=Punctaria latifolia TaxID=90013 RepID=A0A097IUM0_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 4.390e-21
Identity = 56/87 (64.37%), Postives = 62/87 (71.26%), Query Frame = 1
Query:    1 NNKKVPDTSAVEFFVNGKWIPAALVIPNNAWLGLSSSSQ----GSGGAV-GLVEAVRGRGQAVLKARKLSSAMSAANAIAEHLADWL 246
            +N +VPD SAVEF V+G+W P + VI + AWL LS S        G  V GL EAVRGRG AVL ARKLSSAMSAANAIA HLADWL
Sbjct:  212 SNSQVPDASAVEFRVDGRWTPVSSVIRDTAWLNLSGSGHERLDADGEVVLGLTEAVRGRGAAVLGARKLSSAMSAANAIASHLADWL 298          
BLAST of mRNA_H-elongata_contig165095.4102.1 vs. uniprot
Match: A0A097IUK3_9PHAE (Malate dehydrogenase n=1 Tax=Dictyopteris undulata TaxID=156997 RepID=A0A097IUK3_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.330e-17
Identity = 45/84 (53.57%), Postives = 59/84 (70.24%), Query Frame = 1
Query:    1 NNKKVPDTSAVEFFVNGKWIPAALVIPNNAWLGLSSSSQ--GSGGAVGLVEAVRGRGQAVLKARKLSSAMSAANAIAEHLADWL 246
            ++ +VPD S+VEF +NG W+PA  ++ ++ WL L  ++   G+GG   L EAVR RG  +L ARKLSSAMSAANA A HL DWL
Sbjct:  204 SDSQVPDASSVEFCLNGNWVPAQTILGDSPWLKLQDANAVAGAGGGDYLSEAVRNRGAVILAARKLSSAMSAANATAAHLGDWL 287          
BLAST of mRNA_H-elongata_contig165095.4102.1 vs. uniprot
Match: A0A097IUM7_UNDPI (Malate dehydrogenase n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=A0A097IUM7_UNDPI)

HSP 1 Score: 82.0 bits (201), Expect = 1.680e-16
Identity = 46/87 (52.87%), Postives = 57/87 (65.52%), Query Frame = 1
Query:    1 NNKKVPDTSAVEFFVNGKWIPAALVIPNNAWLGLS-----SSSQGSGGAVGLVEAVRGRGQAVLKARKLSSAMSAANAIAEHLADWL 246
            +N +VPD S+ E F+   W+PA     +   LGL+     S+  G G    L +AVRGRG AVL+ARKLSSAMSAANAIA HL+DWL
Sbjct:  214 SNSQVPDVSSAELFIGNMWVPAVFAFRDAHLLGLNAPRPGSAPTGEGEVCSLTKAVRGRGAAVLEARKLSSAMSAANAIAGHLSDWL 300          
BLAST of mRNA_H-elongata_contig165095.4102.1 vs. uniprot
Match: A0A0M3QTM7_DROBS (Malate dehydrogenase n=2 Tax=Drosophila busckii TaxID=30019 RepID=A0A0M3QTM7_DROBS)

HSP 1 Score: 57.8 bits (138), Expect = 4.550e-8
Identity = 34/81 (41.98%), Postives = 48/81 (59.26%), Query Frame = 1
Query:    1 NNKKVPDTSAVEFFVNGKWIPAALVIPNNAWLGLSSSSQGSGGAVGLVEAVRGRGQAVLKARKLSSAMSAANAIAEHLADW 243
            ++ + PD S     +NG+W P A  + +NA+L      QGS      +E V+ RG AV+ ARK+SSAMSAA A  +H+ DW
Sbjct:   99 SSTQYPDASQGTILINGEWKPIAQAVNDNAYL------QGS-----FIETVQKRGAAVIGARKMSSAMSAAKAACDHMHDW 168          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165095.4102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A097IUN1_9PHAE8.940e-2567.05Malate dehydrogenase n=5 Tax=Sargassum TaxID=3015 ... [more]
A0A097IUJ7_SCYLO5.180e-2470.11Malate dehydrogenase n=1 Tax=Scytosiphon lomentari... [more]
A0A097IUL1_9PHAE7.290e-2367.82Malate dehydrogenase n=1 Tax=Scytosiphon dotyi Tax... [more]
A0A6H5KVV0_9PHAE1.330e-2267.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A097IUP1_9PHAE3.210e-2265.52Malate dehydrogenase n=1 Tax=Colpomenia sinuosa Ta... [more]
A0A097IUP6_SACJA7.640e-2260.92Malate dehydrogenase n=2 Tax=Saccharina TaxID=3093... [more]
A0A097IUM0_9PHAE4.390e-2164.37Malate dehydrogenase n=1 Tax=Punctaria latifolia T... [more]
A0A097IUK3_9PHAE1.330e-1753.57Malate dehydrogenase n=1 Tax=Dictyopteris undulata... [more]
A0A097IUM7_UNDPI1.680e-1652.87Malate dehydrogenase n=1 Tax=Undaria pinnatifida T... [more]
A0A0M3QTM7_DROBS4.550e-841.98Malate dehydrogenase n=2 Tax=Drosophila busckii Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig165095contigH-elongata_contig165095:439..684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMalate dehydrogenase
Ec32 orthologEc-02_003100.1
Exons1
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929966.6640267-CDS-H-elongata_contig165095:438..6841622929966.6640267-CDS-H-elongata_contig165095:438..684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165095 439..684 +
1691679227.417274-CDS-H-elongata_contig165095:438..6841691679227.417274-CDS-H-elongata_contig165095:438..684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165095 439..684 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig165095.4102.1prot_H-elongata_contig165095.4102.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig165095 439..684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig165095.4102.1

>prot_H-elongata_contig165095.4102.1 ID=prot_H-elongata_contig165095.4102.1|Name=mRNA_H-elongata_contig165095.4102.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
NNKKVPDTSAVEFFVNGKWIPAALVIPNNAWLGLSSSSQGSGGAVGLVEA
VRGRGQAVLKARKLSSAMSAANAIAEHLADWL
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mRNA from alignment at H-elongata_contig165095:439..684+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig165095.4102.1 ID=mRNA_H-elongata_contig165095.4102.1|Name=mRNA_H-elongata_contig165095.4102.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=246bp|location=Sequence derived from alignment at H-elongata_contig165095:439..684+ (Himanthalia elongata Himel1 dioecious)
AACAACAAAAAGGTCCCCGACACGAGCGCGGTGGAGTTCTTCGTCAATGG CAAATGGATCCCGGCAGCGTTAGTCATCCCAAACAACGCCTGGCTAGGCC TGTCAAGTTCTTCGCAGGGCAGTGGCGGGGCCGTGGGGCTGGTGGAGGCG GTCCGTGGGAGGGGGCAGGCGGTATTAAAGGCGCGCAAGCTCAGTAGCGC TATGTCGGCCGCGAATGCAATCGCGGAACACCTGGCGGACTGGCTG
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Coding sequence (CDS) from alignment at H-elongata_contig165095:439..684+

>mRNA_H-elongata_contig165095.4102.1 ID=mRNA_H-elongata_contig165095.4102.1|Name=mRNA_H-elongata_contig165095.4102.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig165095:439..684+ (Himanthalia elongata Himel1 dioecious)
AACAACAAAAAGGTCCCCGACACGAGCGCGGTGGAGTTCTTCGTCAATGG
CAAATGGATCCCGGCAGCGTTAGTCATCCCAAACAACGCCTGGCTAGGCC
TGTCAAGTTCTTCGCAGGGCAGTGGCGGGGCCGTGGGGCTGGTGGAGGCG
GTCCGTGGGAGGGGGCAGGCGGTATTAAAGGCGCGCAAGCTCAGTAGCGC
TATGTCGGCCGCGAATGCAATCGCGGAACACCTGGCGGACTGGCTGAACA
ACAAAAAGGTCCCCGACACGAGCGCGGTGGAGTTCTTCGTCAATGGCAAA
TGGATCCCGGCAGCGTTAGTCATCCCAAACAACGCCTGGCTAGGCCTGTC
AAGTTCTTCGCAGGGCAGTGGCGGGGCCGTGGGGCTGGTGGAGGCGGTCC
GTGGGAGGGGGCAGGCGGTATTAAAGGCGCGCAAGCTCAGTAGCGCTATG
TCGGCCGCGAATGCAATCGCGGAACACCTGGCGGACTGGCTG
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