mRNA_H-elongata_contig165095.4102.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig165095.4102.1 vs. uniprot
Match: A0A097IUN1_9PHAE (Malate dehydrogenase n=5 Tax=Sargassum TaxID=3015 RepID=A0A097IUN1_9PHAE) HSP 1 Score: 104 bits (259), Expect = 8.940e-25 Identity = 59/88 (67.05%), Postives = 68/88 (77.27%), Query Frame = 1
Query: 1 NNKKVPDTSAVEFFVNGKWIPAALVIPNNAWLGLSSSSQGSG----GAVG--LVEAVRGRGQAVLKARKLSSAMSAANAIAEHLADWL 246
+N +VPD SAVEFFV+G+W+P VIP+ WLGL++S G G GA G LVEAVR RG AVL ARKLSSAMSAANAIAEHL+DWL
Sbjct: 205 SNSQVPDVSAVEFFVDGRWVPIESVIPDTTWLGLANSLPGGGSIGGGAEGQSLVEAVRKRGAAVLGARKLSSAMSAANAIAEHLSDWL 292
BLAST of mRNA_H-elongata_contig165095.4102.1 vs. uniprot
Match: A0A097IUJ7_SCYLO (Malate dehydrogenase n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=A0A097IUJ7_SCYLO) HSP 1 Score: 102 bits (255), Expect = 5.180e-24 Identity = 61/87 (70.11%), Postives = 68/87 (78.16%), Query Frame = 1
Query: 1 NNKKVPDTSAVEFFVNGKWIPAALVIPNNAWLGLSSSSQG----SGGAV-GLVEAVRGRGQAVLKARKLSSAMSAANAIAEHLADWL 246
+N +VPD SAVEFFV+ +WIPAA VI + AWL LSS+S G G AV GL EAVRGRG AVL ARKLSSAMSAANAIA HL+DWL
Sbjct: 219 SNSQVPDASAVEFFVDDRWIPAASVIRDAAWLTLSSNSHGRFDADGEAVLGLAEAVRGRGAAVLDARKLSSAMSAANAIAGHLSDWL 305
BLAST of mRNA_H-elongata_contig165095.4102.1 vs. uniprot
Match: A0A097IUL1_9PHAE (Malate dehydrogenase n=1 Tax=Scytosiphon dotyi TaxID=180438 RepID=A0A097IUL1_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 7.290e-23 Identity = 59/87 (67.82%), Postives = 67/87 (77.01%), Query Frame = 1
Query: 1 NNKKVPDTSAVEFFVNGKWIPAALVIPNNAWLGLSSSSQ----GSGGAV-GLVEAVRGRGQAVLKARKLSSAMSAANAIAEHLADWL 246
+N +VPD SAVEFFV+G+W PAA VI + AWL LSS++ G AV GL EAVRGRG AVL ARKLSSAMSAANAIA HL+DWL
Sbjct: 221 SNSQVPDASAVEFFVDGRWTPAASVIRDAAWLTLSSNAHERFDADGEAVLGLAEAVRGRGAAVLGARKLSSAMSAANAIAGHLSDWL 307
BLAST of mRNA_H-elongata_contig165095.4102.1 vs. uniprot
Match: A0A6H5KVV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV0_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 1.330e-22 Identity = 59/87 (67.82%), Postives = 64/87 (73.56%), Query Frame = 1
Query: 1 NNKKVPDTSAVEFFVNGKWIPAALVIPNNAWLGLSSSSQ----GSGGAV-GLVEAVRGRGQAVLKARKLSSAMSAANAIAEHLADWL 246
+N +VPD SAVEF VNG W PA VI + +WL LS+SS GG V GL EAVRGRG AVL ARKLSSAMSAANAIA HLADWL
Sbjct: 213 SNSQVPDASAVEFRVNGCWTPAPAVIRDASWLNLSNSSHERFDAEGGVVLGLAEAVRGRGAAVLGARKLSSAMSAANAIASHLADWL 299
BLAST of mRNA_H-elongata_contig165095.4102.1 vs. uniprot
Match: A0A097IUP1_9PHAE (Malate dehydrogenase n=1 Tax=Colpomenia sinuosa TaxID=87236 RepID=A0A097IUP1_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 3.210e-22 Identity = 57/87 (65.52%), Postives = 64/87 (73.56%), Query Frame = 1
Query: 1 NNKKVPDTSAVEFFVNGKWIPAALVIPNNAWLGLSSSSQGSGGA-----VGLVEAVRGRGQAVLKARKLSSAMSAANAIAEHLADWL 246
+N +VPD SAVEF V+G+W PAA VI + AWL LSS+S S A +GL E VRGRG AVL ARKLSSAMSAANAIA HL DWL
Sbjct: 219 SNSQVPDASAVEFLVDGRWTPAASVIRDAAWLTLSSNSHESFDADGEPVLGLAEGVRGRGAAVLGARKLSSAMSAANAIASHLKDWL 305
BLAST of mRNA_H-elongata_contig165095.4102.1 vs. uniprot
Match: A0A097IUP6_SACJA (Malate dehydrogenase n=2 Tax=Saccharina TaxID=309357 RepID=A0A097IUP6_SACJA) HSP 1 Score: 96.7 bits (239), Expect = 7.640e-22 Identity = 53/87 (60.92%), Postives = 64/87 (73.56%), Query Frame = 1
Query: 1 NNKKVPDTSAVEFFVNGKWIPAALVIPNNAWLGLSSSSQGSGGAV-----GLVEAVRGRGQAVLKARKLSSAMSAANAIAEHLADWL 246
+N +VPD SAVEF ++G W+PA VI ++ WL LS+S+ G + GL EAVRGRG AVL ARKLSSAMSAANAIA HL+DWL
Sbjct: 209 SNSQVPDASAVEFLIDGSWVPAVSVIGDSGWLDLSTSTPQGGRVLEGEVSGLAEAVRGRGAAVLGARKLSSAMSAANAIAGHLSDWL 295
BLAST of mRNA_H-elongata_contig165095.4102.1 vs. uniprot
Match: A0A097IUM0_9PHAE (Malate dehydrogenase n=1 Tax=Punctaria latifolia TaxID=90013 RepID=A0A097IUM0_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 4.390e-21 Identity = 56/87 (64.37%), Postives = 62/87 (71.26%), Query Frame = 1
Query: 1 NNKKVPDTSAVEFFVNGKWIPAALVIPNNAWLGLSSSSQ----GSGGAV-GLVEAVRGRGQAVLKARKLSSAMSAANAIAEHLADWL 246
+N +VPD SAVEF V+G+W P + VI + AWL LS S G V GL EAVRGRG AVL ARKLSSAMSAANAIA HLADWL
Sbjct: 212 SNSQVPDASAVEFRVDGRWTPVSSVIRDTAWLNLSGSGHERLDADGEVVLGLTEAVRGRGAAVLGARKLSSAMSAANAIASHLADWL 298
BLAST of mRNA_H-elongata_contig165095.4102.1 vs. uniprot
Match: A0A097IUK3_9PHAE (Malate dehydrogenase n=1 Tax=Dictyopteris undulata TaxID=156997 RepID=A0A097IUK3_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 1.330e-17 Identity = 45/84 (53.57%), Postives = 59/84 (70.24%), Query Frame = 1
Query: 1 NNKKVPDTSAVEFFVNGKWIPAALVIPNNAWLGLSSSSQ--GSGGAVGLVEAVRGRGQAVLKARKLSSAMSAANAIAEHLADWL 246
++ +VPD S+VEF +NG W+PA ++ ++ WL L ++ G+GG L EAVR RG +L ARKLSSAMSAANA A HL DWL
Sbjct: 204 SDSQVPDASSVEFCLNGNWVPAQTILGDSPWLKLQDANAVAGAGGGDYLSEAVRNRGAVILAARKLSSAMSAANATAAHLGDWL 287
BLAST of mRNA_H-elongata_contig165095.4102.1 vs. uniprot
Match: A0A097IUM7_UNDPI (Malate dehydrogenase n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=A0A097IUM7_UNDPI) HSP 1 Score: 82.0 bits (201), Expect = 1.680e-16 Identity = 46/87 (52.87%), Postives = 57/87 (65.52%), Query Frame = 1
Query: 1 NNKKVPDTSAVEFFVNGKWIPAALVIPNNAWLGLS-----SSSQGSGGAVGLVEAVRGRGQAVLKARKLSSAMSAANAIAEHLADWL 246
+N +VPD S+ E F+ W+PA + LGL+ S+ G G L +AVRGRG AVL+ARKLSSAMSAANAIA HL+DWL
Sbjct: 214 SNSQVPDVSSAELFIGNMWVPAVFAFRDAHLLGLNAPRPGSAPTGEGEVCSLTKAVRGRGAAVLEARKLSSAMSAANAIAGHLSDWL 300
BLAST of mRNA_H-elongata_contig165095.4102.1 vs. uniprot
Match: A0A0M3QTM7_DROBS (Malate dehydrogenase n=2 Tax=Drosophila busckii TaxID=30019 RepID=A0A0M3QTM7_DROBS) HSP 1 Score: 57.8 bits (138), Expect = 4.550e-8 Identity = 34/81 (41.98%), Postives = 48/81 (59.26%), Query Frame = 1
Query: 1 NNKKVPDTSAVEFFVNGKWIPAALVIPNNAWLGLSSSSQGSGGAVGLVEAVRGRGQAVLKARKLSSAMSAANAIAEHLADW 243
++ + PD S +NG+W P A + +NA+L QGS +E V+ RG AV+ ARK+SSAMSAA A +H+ DW
Sbjct: 99 SSTQYPDASQGTILINGEWKPIAQAVNDNAYL------QGS-----FIETVQKRGAAVIGARKMSSAMSAAKAACDHMHDW 168 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165095.4102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig165095.4102.1 >prot_H-elongata_contig165095.4102.1 ID=prot_H-elongata_contig165095.4102.1|Name=mRNA_H-elongata_contig165095.4102.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp NNKKVPDTSAVEFFVNGKWIPAALVIPNNAWLGLSSSSQGSGGAVGLVEAback to top mRNA from alignment at H-elongata_contig165095:439..684+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig165095.4102.1 ID=mRNA_H-elongata_contig165095.4102.1|Name=mRNA_H-elongata_contig165095.4102.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=246bp|location=Sequence derived from alignment at H-elongata_contig165095:439..684+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig165095:439..684+ >mRNA_H-elongata_contig165095.4102.1 ID=mRNA_H-elongata_contig165095.4102.1|Name=mRNA_H-elongata_contig165095.4102.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig165095:439..684+ (Himanthalia elongata Himel1 dioecious)back to top |