mRNA_H-elongata_contig164905.4091.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig164905.4091.1
Unique NamemRNA_H-elongata_contig164905.4091.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig164905.4091.1 vs. uniprot
Match: UPI001E1E1C50 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E1C50)

HSP 1 Score: 65.5 bits (158), Expect = 4.630e-10
Identity = 42/114 (36.84%), Postives = 65/114 (57.02%), Query Frame = 1
Query:    1 KAYMGVTAHFISEGSADITRCTIACNEFPGSHTAERIAAELTTVMKQYEIETSVVAITTDTAANIKKAGTQLLPQQEWHGCAAHKIDLALRPVLEEPSIKQTLAKHNKMTKHVH 342
            ++Y   TAHF+ +   ++    +   +  GSHT+E IA  L T   ++++ T  V +TTD AAN KKA  Q+L  + + GC  H+I+L +R  LE P I++ LAK  K+    H
Sbjct:  206 ESYNTTTAHFLDK-DWNMKTAILGTKKMEGSHTSENIAESLMTTKNEWKLPT--VVVTTDNAANEKKA-FQILKWERF-GCYGHRINLIVRNALEVPEIRKILAKSRKLVTFFH 314          
BLAST of mRNA_H-elongata_contig164905.4091.1 vs. uniprot
Match: UPI0018D0C22E (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0018D0C22E)

HSP 1 Score: 64.7 bits (156), Expect = 8.620e-10
Identity = 35/97 (36.08%), Postives = 59/97 (60.82%), Query Frame = 1
Query:    1 KAYMGVTAHFISEGSADITRCTIACNEFPGSHTAERIAAELTTVMK-QYEIETSVVAITTDTAANIKKAGTQLLPQQEWHGCAAHKIDLALRPVLEE 288
            K+YM +T HFI E        T++  E   +HT+E +A E+  +++ ++ I   ++ +TTD AANIKKA   +L Q+  H CAAH ++L ++  L++
Sbjct:  203 KSYMTLTIHFIHENK--FKTLTLSTREVKDAHTSENLAREMKDILETEWNILDKIICVTTDNAANIKKAVIDIL-QKRHHSCAAHTLNLVVQDTLKD 296          
BLAST of mRNA_H-elongata_contig164905.4091.1 vs. uniprot
Match: UPI001F8DAAAB (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001F8DAAAB)

HSP 1 Score: 63.9 bits (154), Expect = 1.300e-9
Identity = 34/97 (35.05%), Postives = 59/97 (60.82%), Query Frame = 1
Query:    1 KAYMGVTAHFISEGSADITRCTIACNEFPGSHTAERIAAELTTVMK-QYEIETSVVAITTDTAANIKKAGTQLLPQQEWHGCAAHKIDLALRPVLEE 288
            K+YM +T HFI +G       T++  E   +HT+E +A E+  + + ++ I   ++ +TTD AANIKKA   +L Q+  H CAAH ++L ++  +++
Sbjct:  209 KSYMTLTIHFIYDGK--FKTLTLSTREIKDTHTSENLAREMKDICETEWNILDKIICVTTDNAANIKKAVIDIL-QKRHHSCAAHTLNLVVQDTIKD 302          
BLAST of mRNA_H-elongata_contig164905.4091.1 vs. uniprot
Match: A0A1A8J3D6_NOTKU (BED-type domain-containing protein (Fragment) n=1 Tax=Nothobranchius kuhntae TaxID=321403 RepID=A0A1A8J3D6_NOTKU)

HSP 1 Score: 57.8 bits (138), Expect = 2.210e-7
Identity = 35/109 (32.11%), Postives = 60/109 (55.05%), Query Frame = 1
Query:    4 AYMGVTAHFISEGSADITRCTIACNEFPGSHTAERIAAELTTVMKQYEIETSVVAITTDTAANIKKAGTQLLPQQEWHGCAAHKIDLALRPVLE-EPSIKQTLAKHNKM 327
            AY+ +  HFI+E S ++T   +    FP +HTA  IA  L T+M+++ I++ ++ + TD AAN+      L   +  H C AH ++L +R  L+  P ++    K  K+
Sbjct:  126 AYLAINCHFINE-SDELTSMLLTVRSFPENHTAANIAKVLATLMEEWNIQSKLMCLVTDGAANMLACANNL-DARHIH-CIAHALNLVVRKALDLTPGLEDMRGKARKV 231          
BLAST of mRNA_H-elongata_contig164905.4091.1 vs. uniprot
Match: UPI001C17C339 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C17C339)

HSP 1 Score: 53.9 bits (128), Expect = 1.320e-6
Identity = 31/92 (33.70%), Postives = 47/92 (51.09%), Query Frame = 1
Query:    7 YMGVTAHFISEGSADITRCTIACNEFPGSHTAERIAAELTTVMKQYEIETSVVAITTDTAANIKKAGTQLLPQQEWHGCAAHKIDLALRPVL 282
            Y+GVT  +I +   ++   T+  N     HTA+ +A  L  V  ++ +   V  ITTD AAN+KKA   +     W GC+AH + L +   L
Sbjct:   30 YIGVTCSYI-DTKFNLNEITLTVNYVRYLHTAQHVAESLKEVFNEWNLRDKVFTITTDNAANMKKAIASM-SNIRWQGCSAHTLQLIVGKAL 119          
BLAST of mRNA_H-elongata_contig164905.4091.1 vs. uniprot
Match: UPI001C9C677A (uncharacterized protein LOC122407372 n=1 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9C677A)

HSP 1 Score: 55.5 bits (132), Expect = 1.460e-6
Identity = 30/69 (43.48%), Postives = 40/69 (57.97%), Query Frame = 1
Query:    1 KAYMGVTAHFISEGSADITRCTIACNEFPGSHTAERIAAELTTVMKQYEIETS-VVAITTDTAANIKKA 204
            + ++GVTAH+I   +       IAC  FPGSHTAERIA  L  + + + + T  VVA  TD  +N  KA
Sbjct:   44 RRFLGVTAHWIDNATLTRQSFAIACQRFPGSHTAERIAEVLLDINESFGLNTEKVVATVTDNGSNFAKA 112          
BLAST of mRNA_H-elongata_contig164905.4091.1 vs. uniprot
Match: UPI001C1AB16C (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C1AB16C)

HSP 1 Score: 54.7 bits (130), Expect = 2.730e-6
Identity = 31/94 (32.98%), Postives = 48/94 (51.06%), Query Frame = 1
Query:    1 KAYMGVTAHFISEGSADITRCTIACNEFPGSHTAERIAAELTTVMKQYEIETSVVAITTDTAANIKKAGTQLLPQQEWHGCAAHKIDLALRPVL 282
            + Y+GVT  +I +   ++   T+  N     HTA+ +A  L  V  ++ +   V  ITTD AAN+KKA   +     W GC+AH + L +   L
Sbjct:  172 QGYIGVTCSYI-DTKFNLNEITLTVNYVRYPHTAQHVAESLEEVFNEWNLRDKVFTITTDNAANMKKAIASM-SNIRWQGCSAHTLQLIVGKAL 263          
BLAST of mRNA_H-elongata_contig164905.4091.1 vs. uniprot
Match: UPI001C089F98 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Alosa sapidissima TaxID=34773 RepID=UPI001C089F98)

HSP 1 Score: 54.3 bits (129), Expect = 3.760e-6
Identity = 27/68 (39.71%), Postives = 40/68 (58.82%), Query Frame = 1
Query:    1 KAYMGVTAHFISEGSADITRCTIACNEFPGSHTAERIAAELTTVMKQYEIETSVVAITTDTAANIKKA 204
            ++++GVTAH+I EG+ +     +AC    GSHT + +A  L  +  QY I   VV  TTD+ +N  KA
Sbjct:  209 QSFIGVTAHWIDEGTLERRSAALACKRLKGSHTFDVVAGALDEIHCQYRIRGKVVRTTTDSGSNFIKA 276          
BLAST of mRNA_H-elongata_contig164905.4091.1 vs. uniprot
Match: A0A6G0W4I3_APHCR (Zinc finger BED domain-containing protein 4-like n=1 Tax=Aphis craccivora TaxID=307492 RepID=A0A6G0W4I3_APHCR)

HSP 1 Score: 54.3 bits (129), Expect = 3.810e-6
Identity = 32/97 (32.99%), Postives = 52/97 (53.61%), Query Frame = 1
Query:    1 KAYMGVTAHFISEGSADITRCTIACNEFPGSHTAERIAAELTTVMKQYEIETS-VVAITTDTAANIKKAGTQLLPQQEWHGCAAHKIDLALRPVLEE 288
            K+Y+G+T HFIS G  +    TI   +    HT++ +A  L   +  + I    VVA+ +D+AANIKK  T+L        C AH ++L +   +++
Sbjct:  215 KSYLGITIHFISSGQLESV--TIGVVQLFEGHTSKYLAEVLDNCLLNWNISNEKVVAVVSDSAANIKKTVTELYGCDRQISCLAHTVNLVVEKAIDK 309          
BLAST of mRNA_H-elongata_contig164905.4091.1 vs. uniprot
Match: A0A8J9UAP6_BRAAE (Hypothetical protein n=1 Tax=Brassicogethes aeneus TaxID=1431903 RepID=A0A8J9UAP6_BRAAE)

HSP 1 Score: 53.9 bits (128), Expect = 5.100e-6
Identity = 30/106 (28.30%), Postives = 60/106 (56.60%), Query Frame = 1
Query:    4 AYMGVTAHFISEGSADITRCTIACNEFPG-SHTAERIAAELTTVMKQYEIETSVVAITTDTAANIKKAGTQLLPQQEWHGCAAHKIDLALRPVLEE-PSIKQTLAK 315
            +Y+ +T HF+ + +  +    ++ NE     HT + IAA+++ ++ +++++  +V I +D  AN+K A T  L +   H C AH ++L  +  L E P +K+ + K
Sbjct:  233 SYLSLTCHFVHDMT--LHSRVLSVNEMSSIHHTGQNIAADISAILTEWDLDAKIVTIVSDNGANVKNAITVHLRKYH-HPCVAHTLNLISKEALNENPELKKLITK 335          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig164905.4091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
UPI001E1E1C504.630e-1036.84E3 SUMO-protein ligase ZBED1-like n=1 Tax=Mercenar... [more]
UPI0018D0C22E8.620e-1036.08E3 SUMO-protein ligase ZBED1-like n=1 Tax=Plutella... [more]
UPI001F8DAAAB1.300e-935.05Uncharacterized protein n=1 Tax=Spodoptera exigua ... [more]
A0A1A8J3D6_NOTKU2.210e-732.11BED-type domain-containing protein (Fragment) n=1 ... [more]
UPI001C17C3391.320e-633.70Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
UPI001C9C677A1.460e-643.48uncharacterized protein LOC122407372 n=1 Tax=Ventu... [more]
UPI001C1AB16C2.730e-632.98Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
UPI001C089F983.760e-639.71E3 SUMO-protein ligase ZBED1-like n=1 Tax=Alosa sa... [more]
A0A6G0W4I3_APHCR3.810e-632.99Zinc finger BED domain-containing protein 4-like n... [more]
A0A8J9UAP6_BRAAE5.100e-628.30Hypothetical protein n=1 Tax=Brassicogethes aeneus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig164905contigH-elongata_contig164905:1079..1420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score61.2
Seed ortholog evalue3.4e-07
Seed eggNOG ortholog8049.ENSGMOP00000020500
EggNOG free text desc.Conserved hypothetical protein
EggNOG OGs39UGI@33154,3BNFC@33208,3DFE3@33213,48J0R@7711,49G7Q@7742,4A752@7898,KOG1121@1,KOG1121@2759
COG Functional cat.L
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size342
Cds size333
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929964.7863178-CDS-H-elongata_contig164905:1078..14111622929964.7863178-CDS-H-elongata_contig164905:1078..1411Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164905 1079..1411 -
1691679226.4640882-CDS-H-elongata_contig164905:1078..14111691679226.4640882-CDS-H-elongata_contig164905:1078..1411Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164905 1079..1411 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929964.8031244-UTR-H-elongata_contig164905:1411..14201622929964.8031244-UTR-H-elongata_contig164905:1411..1420Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig164905 1412..1420 -
1691679226.4761677-UTR-H-elongata_contig164905:1411..14201691679226.4761677-UTR-H-elongata_contig164905:1411..1420Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig164905 1412..1420 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig164905.4091.1prot_H-elongata_contig164905.4091.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig164905 1079..1411 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig164905.4091.1

>prot_H-elongata_contig164905.4091.1 ID=prot_H-elongata_contig164905.4091.1|Name=mRNA_H-elongata_contig164905.4091.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
MGVTAHFISEGSADITRCTIACNEFPGSHTAERIAAELTTVMKQYEIETS
VVAITTDTAANIKKAGTQLLPQQEWHGCAAHKIDLALRPVLEEPSIKQTL
AKHNKMTKHVH
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mRNA from alignment at H-elongata_contig164905:1079..1420-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig164905.4091.1 ID=mRNA_H-elongata_contig164905.4091.1|Name=mRNA_H-elongata_contig164905.4091.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=342bp|location=Sequence derived from alignment at H-elongata_contig164905:1079..1420- (Himanthalia elongata Himel1 dioecious)
AAAGCTTACATGGGCGTCACGGCGCACTTTATCTCTGAAGGATCAGCTGA CATTACAAGGTGCACCATCGCTTGCAACGAGTTTCCTGGCTCTCACACCG CCGAGCGCATCGCAGCGGAGCTGACCACTGTAATGAAGCAGTATGAGATC GAAACGAGTGTAGTCGCCATCACTACGGATACCGCAGCAAATATCAAGAA AGCTGGCACGCAGCTCCTGCCTCAACAGGAATGGCATGGTTGTGCAGCTC ACAAGATCGACCTGGCGCTTAGGCCTGTTCTGGAGGAGCCATCGATCAAG CAAACTTTGGCGAAACACAACAAGATGACAAAGCACGTCCAT
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Coding sequence (CDS) from alignment at H-elongata_contig164905:1079..1420-

>mRNA_H-elongata_contig164905.4091.1 ID=mRNA_H-elongata_contig164905.4091.1|Name=mRNA_H-elongata_contig164905.4091.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig164905:1079..1420- (Himanthalia elongata Himel1 dioecious)
ATGGGCGTCACGGCGCACTTTATCTCTGAAGGATCAGCTGACATTACAAG
GTGCACCATCGCTTGCAACGAGTTTCCTGGCTCTCACACCGCCGAGCGCA
TCGCAGCGGAGCTGACCACTGTAATGAAGCAGTATGAGATCGAAACGAGT
GTAGTCGCCATCACTACGGATACCGCAGCAAATATCAAGAAAGCTGGCAC
GCAGCTCCTGCCTCAACAGGAATGGCATGGTTGTGCAGCTCACAAGATCG
ACCTGGCGCTTAGGCCTGTTCTGGAGGAGCCATCGATCAAGCAAACTTTG
GCGAAACACAACAAGATGACAAAGCACGTCCATATGGGCGTCACGGCGCA
CTTTATCTCTGAAGGATCAGCTGACATTACAAGGTGCACCATCGCTTGCA
ACGAGTTTCCTGGCTCTCACACCGCCGAGCGCATCGCAGCGGAGCTGACC
ACTGTAATGAAGCAGTATGAGATCGAAACGAGTGTAGTCGCCATCACTAC
GGATACCGCAGCAAATATCAAGAAAGCTGGCACGCAGCTCCTGCCTCAAC
AGGAATGGCATGGTTGTGCAGCTCACAAGATCGACCTGGCGCTTAGGCCT
GTTCTGGAGGAGCCATCGATCAAGCAAACTTTGGCGAAACACAACAAGAT
GACAAAGCACGTCCAT
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