mRNA_H-elongata_contig16487.4088.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16487.4088.1
Unique NamemRNA_H-elongata_contig16487.4088.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig16487.4088.1 vs. uniprot
Match: A0A6H5JI36_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI36_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 2.480e-64
Identity = 91/127 (71.65%), Postives = 107/127 (84.25%), Query Frame = 1
Query:    1 GHLEFSLCDTADLDDPDGVVTQGCFNMHPLDRAEDDGDASPIDSNYPGRYFLDPPCRSVETDQTILPGAFTGYVVTARYQLPSGITCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
            GHLEF +C+  D+ DPDGVVTQGCFNMHPLDRA+DDGDASPID ++ GRY+LDPPCR+ ETDQ  LPGA+ G V TARY+LPSG+TCSRCI+QM YYTGN+C HPGYD+F+P S P  CAP K DW+
Sbjct:  214 GHLEFFICNAEDMSDPDGVVTQGCFNMHPLDRADDDGDASPIDPDHIGRYYLDPPCRAGETDQDTLPGAYPGDVATARYKLPSGLTCSRCILQMVYYTGNACKHPGYDEFDPVSVPDGCAPTKEDWV 340          
BLAST of mRNA_H-elongata_contig16487.4088.1 vs. uniprot
Match: D7FP25_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP25_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 8.960e-58
Identity = 88/128 (68.75%), Postives = 98/128 (76.56%), Query Frame = 1
Query:    1 GHLEFSLCDTADLDD-PDGVVTQGCFNMHPLDRAEDDGDASPIDSNYPGRYFLDPPCRSVETDQTILPGAFTGYVVTARYQLPSGITCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
            GH+E  LCD  DL D PD VVTQ CFN +PLDRAEDD   SPID    GR+ LDPPCR+ ETDQ +LPGAF G V TAR+QLP G+TC RC+VQM YYTGNSC H GY +FNP SWPS CAP+KADWI
Sbjct:   97 GHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNSPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMVYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWI 224          
BLAST of mRNA_H-elongata_contig16487.4088.1 vs. uniprot
Match: D8LD67_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD67_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 9.390e-57
Identity = 88/128 (68.75%), Postives = 98/128 (76.56%), Query Frame = 1
Query:    1 GHLEFSLCDTADLDD-PDGVVTQGCFNMHPLDRAEDDGDASPIDSNYPGRYFLDPPCRSVETDQTILPGAFTGYVVTARYQLPSGITCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
            GH+E  LCD  DL D PD VVTQ CFN +PLDRAEDD    PID    GR+ LDPPCR+ ETDQ +LPGAF G V TAR+QLP G+TC RC+VQMAYYTGNSC H GY +FNP SWPS CAP+KADWI
Sbjct:  146 GHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNGPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMAYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWI 273          
BLAST of mRNA_H-elongata_contig16487.4088.1 vs. uniprot
Match: D7G4D7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D7_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 5.830e-55
Identity = 79/127 (62.20%), Postives = 95/127 (74.80%), Query Frame = 1
Query:    1 GHLEFSLCDTADLDDPDGVVTQGCFNMHPLDRAEDDGDASPIDSNYPGRYFLDPPCRSVETDQTILPGAFTGYVVTARYQLPSGITCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
            GH+EF +C+  +++DPDG+  Q CFN +PL RAE D + SPID NYPGRY++DP CR  ETDQT   GA  GYV+ A YQLP G+TC RCI+QM YYTGNSC H GY++F P SWPS CAP K DWI
Sbjct:  125 GHVEFFICNADEMEDPDGIANQECFNNYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLPEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWI 251          
BLAST of mRNA_H-elongata_contig16487.4088.1 vs. uniprot
Match: D8LMS9_ECTSI (EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LMS9_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 1.460e-54
Identity = 83/127 (65.35%), Postives = 97/127 (76.38%), Query Frame = 1
Query:    1 GHLEFSLCDTADLDDPDGVVTQGCFNMHPLDRAEDDGDASPIDSNYPGRYFLDPPCRSVETDQTILPGAFTGYVVTARYQLPSGITCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
            GH EF +C+T D+DDPDGV TQ CFNMHPL RA+DDGDASPID NYPGRY++DP CR  ET+Q+    +  GY +  RY LP  I C  CI+QM YYTGN+C H GY++FNPTSWPS CAPNK DWI
Sbjct:  154 GHCEFFVCNTDDMDDPDGVPTQECFNMHPLTRADDDGDASPIDPNYPGRYYVDPECREEETEQSS--NSIEGYNIKMRYVLPD-IECEHCILQMVYYTGNTCKHIGYEEFNPTSWPSSCAPNKWDWI 277          
BLAST of mRNA_H-elongata_contig16487.4088.1 vs. uniprot
Match: D8LMF4_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF4_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 1.460e-53
Identity = 83/128 (64.84%), Postives = 96/128 (75.00%), Query Frame = 1
Query:    1 GHLEFSLCDTADLDD-PDGVVTQGCFNMHPLDRAEDDGDASPIDSNYPGRYFLDPPCRSVETDQTILPGAFTGYVVTARYQLPSGITCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
            GH+E  LCDTADL +  D +VTQ CFN +PLDRA DD    PID  Y GR+ LDPPCR+ ETDQ ++ GA+ G V TARYQLP G+ C RC+VQM YYTGNSC H GY +FNP SWPS CAP+KADWI
Sbjct:  153 GHVEAFLCDTADLPEGEDSIVTQSCFNDYPLDRAIDDEFNGPIDPEYKGRFILDPPCRASETDQDLVEGAYPGDVATARYQLPEGVVCDRCVVQMVYYTGNSCKHEGYAEFNPESWPSSCAPSKADWI 280          
BLAST of mRNA_H-elongata_contig16487.4088.1 vs. uniprot
Match: A0A6H5KD35_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD35_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 1.970e-52
Identity = 84/128 (65.62%), Postives = 95/128 (74.22%), Query Frame = 1
Query:    1 GHLEFSLCDTADLDD-PDGVVTQGCFNMHPLDRAEDDGDASPIDSNYPGRYFLDPPCRSVETDQTILPGAFTGYVVTARYQLPSGITCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
            GH+E  LCD  DL D PD VVTQ CFN HPLDRAEDD    PID    GR+ LDPPCR+ ETDQ ++PGAF G V TAR+QLP G+TC RC+VQMAY+  NSC H GY +FNP SWP  CAP+KADWI
Sbjct:  117 GHVEMFLCDADDLPDGPDSVVTQSCFNEHPLDRAEDDEFNGPIDPLNRGRFILDPPCRASETDQELVPGAFPGDVATARFQLPQGVTCERCVVQMAYW--NSCKHQGYAEFNPPSWPGSCAPSKADWI 242          
BLAST of mRNA_H-elongata_contig16487.4088.1 vs. uniprot
Match: D8LM92_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM92_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 3.910e-52
Identity = 83/128 (64.84%), Postives = 94/128 (73.44%), Query Frame = 1
Query:    1 GHLEFSLCDTADLDD-PDGVVTQGCFNMHPLDRAEDDGDASPIDSNYPGRYFLDPPCRSVETDQTILPGAFTGYVVTARYQLPSGITCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
            GH+E  LCD  DL   PD  VTQ CFN HPLDR +DD   SPID +  GR+ LDPPCR+ ETDQ +L GAF G V TAR++LP G+TC RC+VQM YYTGNSC H GY +FNP SWPS CAP KADWI
Sbjct:  148 GHVEMFLCDADDLPGGPDSTVTQSCFNEHPLDRVDDDDFNSPIDPSNTGRFILDPPCRASETDQEMLDGAFPGDVATARFKLPQGLTCERCVVQMVYYTGNSCKHQGYAEFNPESWPSSCAPTKADWI 275          
BLAST of mRNA_H-elongata_contig16487.4088.1 vs. uniprot
Match: D8LM93_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM93_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 4.620e-52
Identity = 78/128 (60.94%), Postives = 94/128 (73.44%), Query Frame = 1
Query:    1 GHLEFSLCDTADLDD-PDGVVTQGCFNMHPLDRAEDDGDASPIDSNYPGRYFLDPPCRSVETDQTILPGAFTGYVVTARYQLPSGITCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
            GH+E  LC+ A+L   PD  VTQ CFN HPLDRA+DD    P D +  GR+ LDPPCR+ ETDQ +L GA+   V TAR++LP G++C RC+VQM YYTGNSC H GY +FNP SWPS CAP+KADWI
Sbjct:  149 GHVEMFLCNAANLPGGPDSTVTQSCFNEHPLDRADDDEFNGPADPDNTGRFILDPPCRASETDQALLDGAYPSDVATARFKLPQGLSCERCVVQMVYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWI 276          
BLAST of mRNA_H-elongata_contig16487.4088.1 vs. uniprot
Match: D7FU28_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU28_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 5.320e-52
Identity = 80/127 (62.99%), Postives = 93/127 (73.23%), Query Frame = 1
Query:    1 GHLEFSLCDTADLDDPDGVVTQGCFNMHPLDRAEDDGDASPIDSNYPGRYFLDPPCRSVETDQTILPGAFTGYVVTARYQLPSGITCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
            GHLEF +CDT DLDDPD V TQ CFN +PL R+E DG  SPID NYPGRY+ DPPCR  ET+Q     A  GYV+T  Y LP  + C  C++QM YYTG+ C HPGY++FNP SW SECAPNK+DWI
Sbjct:  127 GHLEFFICDTQDLDDPDDVATQECFNKYPLTRSEGDGVNSPIDPNYPGRYYADPPCRENETEQDYDWRAGGGYVMTMNYDLPENLVCEHCVLQMWYYTGHKCYHPGYEEFNPASWGSECAPNKSDWI 253          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16487.4088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JI36_9PHAE2.480e-6471.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FP25_ECTSI8.960e-5868.75EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LD67_ECTSI9.390e-5768.75EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G4D7_ECTSI5.830e-5562.20EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LMS9_ECTSI1.460e-5465.35EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]
D8LMF4_ECTSI1.460e-5364.84EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]
A0A6H5KD35_9PHAE1.970e-5265.63CBM1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LM92_ECTSI3.910e-5264.84EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LM93_ECTSI4.620e-5260.94EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FU28_ECTSI5.320e-5262.99EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16487contigH-elongata_contig16487:624..1371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score214.5
Seed ortholog evalue2.8e-53
Seed eggNOG ortholog2880.D7FSZ8
EggNOG free text desc.Fungal-type cellulose-binding domain
EggNOG OGs2CZUJ@1,2SBQR@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929964.6326218-CDS-H-elongata_contig16487:623..9121622929964.6326218-CDS-H-elongata_contig16487:623..912Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16487 624..912 +
1691679226.37862-CDS-H-elongata_contig16487:623..9121691679226.37862-CDS-H-elongata_contig16487:623..912Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16487 624..912 +
1622929964.642645-CDS-H-elongata_contig16487:1279..13711622929964.642645-CDS-H-elongata_contig16487:1279..1371Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16487 1280..1371 +
1691679226.3909807-CDS-H-elongata_contig16487:1279..13711691679226.3909807-CDS-H-elongata_contig16487:1279..1371Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16487 1280..1371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16487.4088.1prot_H-elongata_contig16487.4088.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16487 624..1371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16487.4088.1

>prot_H-elongata_contig16487.4088.1 ID=prot_H-elongata_contig16487.4088.1|Name=mRNA_H-elongata_contig16487.4088.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
GHLEFSLCDTADLDDPDGVVTQGCFNMHPLDRAEDDGDASPIDSNYPGRY
FLDPPCRSVETDQTILPGAFTGYVVTARYQLPSGITCSRCIVQMAYYTGN
SCMHPGYDDFNPTSWPSECAPNKADWI
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mRNA from alignment at H-elongata_contig16487:624..1371+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16487.4088.1 ID=mRNA_H-elongata_contig16487.4088.1|Name=mRNA_H-elongata_contig16487.4088.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=748bp|location=Sequence derived from alignment at H-elongata_contig16487:624..1371+ (Himanthalia elongata Himel1 dioecious)
GGGCACTTAGAGTTTTCACTCTGCGACACTGCCGACCTCGATGACCCAGA CGGTGTGGTGACCCAGGGGTGCTTCAACATGCACCCGTTGGATCGAGCGG AAGACGACGGAGACGCGTCGCCCATCGACTCCAATTATCCGGGAAGATAT TTCCTTGACCCACCCTGCAGGTCTGTGGAAACAGACCAGACTATCCTTCC CGGTGCCTTCACTGGCTACGTCGTGACGGCTCGGTACCAGCTCCCTTCCG GCATAACCTGCTCTCGCTGCATCGTGCAGATGGCCTACTGTGAGTGTTTT GTGGTGATCATGGTTGTGCACGTCTATCTAGCATCGGTTCATCTTGCTTG AGCATCTCGTCTGTCAACATGAACATAAACGCTCCATCACGTGGTGGGTG GGTCGGCACGAATGAAGAATACAGAATAAGGGAAAAAAGATTCGGAAGGG GTTCTAAGCCTAGCGATAGGAAACAAGTTGGTTGTGGAAGGTGTTATTAT TAAGCGATTTATTATGGCAACCGCGTTGGGCACGGCCTTCACGGCAATGC TGGATATTTGCATCTGTTTCATCCTAAACCTGGGTTTTGAGTAATCTTGA CTATCGAGCATATGATTTCGCGTAACATTCCCCGAACACGTTTACCTTCG ACACAGACACCGGTAACTCTTGCATGCACCCGGGTTACGACGACTTCAAC CCTACTTCTTGGCCCAGCGAGTGCGCCCCGAACAAAGCAGACTGGATC
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Coding sequence (CDS) from alignment at H-elongata_contig16487:624..1371+

>mRNA_H-elongata_contig16487.4088.1 ID=mRNA_H-elongata_contig16487.4088.1|Name=mRNA_H-elongata_contig16487.4088.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig16487:624..1371+ (Himanthalia elongata Himel1 dioecious)
GGGCACTTAGAGTTTTCACTCTGCGACACTGCCGACCTCGATGACCCAGA
CGGTGTGGTGACCCAGGGGTGCTTCAACATGCACCCGTTGGATCGAGCGG
AAGACGACGGAGACGCGTCGCCCATCGACTCCAATTATCCGGGAAGATAT
TTCCTTGACCCACCCTGCAGGTCTGTGGAAACAGACCAGACTATCCTTCC
CGGTGCCTTCACTGGCTACGTCGTGACGGCTCGGTACCAGCTCCCTTCCG
GCATAACCTGCTCTCGCTGCATCGTGCAGATGGCCTACTGGGCACTTAGA
GTTTTCACTCTGCGACACTGCCGACCTCGATGACCCAGACGGTGTGGTGA
CCCAGGGGTGCTTCAACATGCACCCGTTGGATCGAGCGGAAGACGACGGA
GACGCGTCGCCCATCGACTCCAATTATCCGGGAAGATATTTCCTTGACCC
ACCCTGCAGGTCTGTGGAAACAGACCAGACTATCCTTCCCGGTGCCTTCA
CTGGCTACGTCGTGACGGCTCGGTACCAGCTCCCTTCCGGCATAACCTGC
TCTCGCTGCATCGTGCAGATGGCCTACTACACCGGTAACTCTTGCATGCA
CCCGGGTTACGACGACTTCAACCCTACTTCTTGGCCCAGCGAGTGCGCCC
CGAACAAAGCAGACTGGATCACACCGGTAACTCTTGCATGCACCCGGGTT
ACGACGACTTCAACCCTACTTCTTGGCCCAGCGAGTGCGCCCCGAACAAA
GCAGACTGGATC
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