mRNA_H-elongata_contig16487.4088.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig16487.4088.1 vs. uniprot
Match: A0A6H5JI36_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI36_9PHAE) HSP 1 Score: 213 bits (541), Expect = 2.480e-64 Identity = 91/127 (71.65%), Postives = 107/127 (84.25%), Query Frame = 1
Query: 1 GHLEFSLCDTADLDDPDGVVTQGCFNMHPLDRAEDDGDASPIDSNYPGRYFLDPPCRSVETDQTILPGAFTGYVVTARYQLPSGITCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
GHLEF +C+ D+ DPDGVVTQGCFNMHPLDRA+DDGDASPID ++ GRY+LDPPCR+ ETDQ LPGA+ G V TARY+LPSG+TCSRCI+QM YYTGN+C HPGYD+F+P S P CAP K DW+
Sbjct: 214 GHLEFFICNAEDMSDPDGVVTQGCFNMHPLDRADDDGDASPIDPDHIGRYYLDPPCRAGETDQDTLPGAYPGDVATARYKLPSGLTCSRCILQMVYYTGNACKHPGYDEFDPVSVPDGCAPTKEDWV 340
BLAST of mRNA_H-elongata_contig16487.4088.1 vs. uniprot
Match: D7FP25_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP25_ECTSI) HSP 1 Score: 192 bits (489), Expect = 8.960e-58 Identity = 88/128 (68.75%), Postives = 98/128 (76.56%), Query Frame = 1
Query: 1 GHLEFSLCDTADLDD-PDGVVTQGCFNMHPLDRAEDDGDASPIDSNYPGRYFLDPPCRSVETDQTILPGAFTGYVVTARYQLPSGITCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
GH+E LCD DL D PD VVTQ CFN +PLDRAEDD SPID GR+ LDPPCR+ ETDQ +LPGAF G V TAR+QLP G+TC RC+VQM YYTGNSC H GY +FNP SWPS CAP+KADWI
Sbjct: 97 GHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNSPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMVYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWI 224
BLAST of mRNA_H-elongata_contig16487.4088.1 vs. uniprot
Match: D8LD67_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD67_ECTSI) HSP 1 Score: 192 bits (489), Expect = 9.390e-57 Identity = 88/128 (68.75%), Postives = 98/128 (76.56%), Query Frame = 1
Query: 1 GHLEFSLCDTADLDD-PDGVVTQGCFNMHPLDRAEDDGDASPIDSNYPGRYFLDPPCRSVETDQTILPGAFTGYVVTARYQLPSGITCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
GH+E LCD DL D PD VVTQ CFN +PLDRAEDD PID GR+ LDPPCR+ ETDQ +LPGAF G V TAR+QLP G+TC RC+VQMAYYTGNSC H GY +FNP SWPS CAP+KADWI
Sbjct: 146 GHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNGPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMAYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWI 273
BLAST of mRNA_H-elongata_contig16487.4088.1 vs. uniprot
Match: D7G4D7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D7_ECTSI) HSP 1 Score: 185 bits (469), Expect = 5.830e-55 Identity = 79/127 (62.20%), Postives = 95/127 (74.80%), Query Frame = 1
Query: 1 GHLEFSLCDTADLDDPDGVVTQGCFNMHPLDRAEDDGDASPIDSNYPGRYFLDPPCRSVETDQTILPGAFTGYVVTARYQLPSGITCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
GH+EF +C+ +++DPDG+ Q CFN +PL RAE D + SPID NYPGRY++DP CR ETDQT GA GYV+ A YQLP G+TC RCI+QM YYTGNSC H GY++F P SWPS CAP K DWI
Sbjct: 125 GHVEFFICNADEMEDPDGIANQECFNNYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLPEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWI 251
BLAST of mRNA_H-elongata_contig16487.4088.1 vs. uniprot
Match: D8LMS9_ECTSI (EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LMS9_ECTSI) HSP 1 Score: 186 bits (473), Expect = 1.460e-54 Identity = 83/127 (65.35%), Postives = 97/127 (76.38%), Query Frame = 1
Query: 1 GHLEFSLCDTADLDDPDGVVTQGCFNMHPLDRAEDDGDASPIDSNYPGRYFLDPPCRSVETDQTILPGAFTGYVVTARYQLPSGITCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
GH EF +C+T D+DDPDGV TQ CFNMHPL RA+DDGDASPID NYPGRY++DP CR ET+Q+ + GY + RY LP I C CI+QM YYTGN+C H GY++FNPTSWPS CAPNK DWI
Sbjct: 154 GHCEFFVCNTDDMDDPDGVPTQECFNMHPLTRADDDGDASPIDPNYPGRYYVDPECREEETEQSS--NSIEGYNIKMRYVLPD-IECEHCILQMVYYTGNTCKHIGYEEFNPTSWPSSCAPNKWDWI 277
BLAST of mRNA_H-elongata_contig16487.4088.1 vs. uniprot
Match: D8LMF4_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF4_ECTSI) HSP 1 Score: 185 bits (469), Expect = 1.460e-53 Identity = 83/128 (64.84%), Postives = 96/128 (75.00%), Query Frame = 1
Query: 1 GHLEFSLCDTADLDD-PDGVVTQGCFNMHPLDRAEDDGDASPIDSNYPGRYFLDPPCRSVETDQTILPGAFTGYVVTARYQLPSGITCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
GH+E LCDTADL + D +VTQ CFN +PLDRA DD PID Y GR+ LDPPCR+ ETDQ ++ GA+ G V TARYQLP G+ C RC+VQM YYTGNSC H GY +FNP SWPS CAP+KADWI
Sbjct: 153 GHVEAFLCDTADLPEGEDSIVTQSCFNDYPLDRAIDDEFNGPIDPEYKGRFILDPPCRASETDQDLVEGAYPGDVATARYQLPEGVVCDRCVVQMVYYTGNSCKHEGYAEFNPESWPSSCAPSKADWI 280
BLAST of mRNA_H-elongata_contig16487.4088.1 vs. uniprot
Match: A0A6H5KD35_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD35_9PHAE) HSP 1 Score: 181 bits (458), Expect = 1.970e-52 Identity = 84/128 (65.62%), Postives = 95/128 (74.22%), Query Frame = 1
Query: 1 GHLEFSLCDTADLDD-PDGVVTQGCFNMHPLDRAEDDGDASPIDSNYPGRYFLDPPCRSVETDQTILPGAFTGYVVTARYQLPSGITCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
GH+E LCD DL D PD VVTQ CFN HPLDRAEDD PID GR+ LDPPCR+ ETDQ ++PGAF G V TAR+QLP G+TC RC+VQMAY+ NSC H GY +FNP SWP CAP+KADWI
Sbjct: 117 GHVEMFLCDADDLPDGPDSVVTQSCFNEHPLDRAEDDEFNGPIDPLNRGRFILDPPCRASETDQELVPGAFPGDVATARFQLPQGVTCERCVVQMAYW--NSCKHQGYAEFNPPSWPGSCAPSKADWI 242
BLAST of mRNA_H-elongata_contig16487.4088.1 vs. uniprot
Match: D8LM92_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM92_ECTSI) HSP 1 Score: 184 bits (467), Expect = 3.910e-52 Identity = 83/128 (64.84%), Postives = 94/128 (73.44%), Query Frame = 1
Query: 1 GHLEFSLCDTADLDD-PDGVVTQGCFNMHPLDRAEDDGDASPIDSNYPGRYFLDPPCRSVETDQTILPGAFTGYVVTARYQLPSGITCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
GH+E LCD DL PD VTQ CFN HPLDR +DD SPID + GR+ LDPPCR+ ETDQ +L GAF G V TAR++LP G+TC RC+VQM YYTGNSC H GY +FNP SWPS CAP KADWI
Sbjct: 148 GHVEMFLCDADDLPGGPDSTVTQSCFNEHPLDRVDDDDFNSPIDPSNTGRFILDPPCRASETDQEMLDGAFPGDVATARFKLPQGLTCERCVVQMVYYTGNSCKHQGYAEFNPESWPSSCAPTKADWI 275
BLAST of mRNA_H-elongata_contig16487.4088.1 vs. uniprot
Match: D8LM93_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM93_ECTSI) HSP 1 Score: 176 bits (447), Expect = 4.620e-52 Identity = 78/128 (60.94%), Postives = 94/128 (73.44%), Query Frame = 1
Query: 1 GHLEFSLCDTADLDD-PDGVVTQGCFNMHPLDRAEDDGDASPIDSNYPGRYFLDPPCRSVETDQTILPGAFTGYVVTARYQLPSGITCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
GH+E LC+ A+L PD VTQ CFN HPLDRA+DD P D + GR+ LDPPCR+ ETDQ +L GA+ V TAR++LP G++C RC+VQM YYTGNSC H GY +FNP SWPS CAP+KADWI
Sbjct: 149 GHVEMFLCNAANLPGGPDSTVTQSCFNEHPLDRADDDEFNGPADPDNTGRFILDPPCRASETDQALLDGAYPSDVATARFKLPQGLSCERCVVQMVYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWI 276
BLAST of mRNA_H-elongata_contig16487.4088.1 vs. uniprot
Match: D7FU28_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU28_ECTSI) HSP 1 Score: 184 bits (467), Expect = 5.320e-52 Identity = 80/127 (62.99%), Postives = 93/127 (73.23%), Query Frame = 1
Query: 1 GHLEFSLCDTADLDDPDGVVTQGCFNMHPLDRAEDDGDASPIDSNYPGRYFLDPPCRSVETDQTILPGAFTGYVVTARYQLPSGITCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
GHLEF +CDT DLDDPD V TQ CFN +PL R+E DG SPID NYPGRY+ DPPCR ET+Q A GYV+T Y LP + C C++QM YYTG+ C HPGY++FNP SW SECAPNK+DWI
Sbjct: 127 GHLEFFICDTQDLDDPDDVATQECFNKYPLTRSEGDGVNSPIDPNYPGRYYADPPCRENETEQDYDWRAGGGYVMTMNYDLPENLVCEHCVLQMWYYTGHKCYHPGYEEFNPASWGSECAPNKSDWI 253 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16487.4088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16487.4088.1 >prot_H-elongata_contig16487.4088.1 ID=prot_H-elongata_contig16487.4088.1|Name=mRNA_H-elongata_contig16487.4088.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp GHLEFSLCDTADLDDPDGVVTQGCFNMHPLDRAEDDGDASPIDSNYPGRYback to top mRNA from alignment at H-elongata_contig16487:624..1371+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16487.4088.1 ID=mRNA_H-elongata_contig16487.4088.1|Name=mRNA_H-elongata_contig16487.4088.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=748bp|location=Sequence derived from alignment at H-elongata_contig16487:624..1371+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16487:624..1371+ >mRNA_H-elongata_contig16487.4088.1 ID=mRNA_H-elongata_contig16487.4088.1|Name=mRNA_H-elongata_contig16487.4088.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig16487:624..1371+ (Himanthalia elongata Himel1 dioecious)back to top |