mRNA_H-elongata_contig163663.4027.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig163663.4027.1 vs. uniprot
Match: D8LGM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM3_ECTSI) HSP 1 Score: 194 bits (492), Expect = 6.260e-56 Identity = 92/134 (68.66%), Postives = 111/134 (82.84%), Query Frame = 1
Query: 1 QDKSLAYWREGPYWMTLHKLWRRMAERDYRTAAKAVYVLHRVARDTTAESWGHFRATLLQMRRVEDKGTRSRYFSRRIVRRARYPCP*NVDEEGHPFREWLDSYAEFVLMRLQSFCPDLSDLAAVDSGTRHDDA 402
+D A W+EGPYWMTLHKLWRRMAERDYRTA+KAVYVLHR+AR TTAESWG+FR+TL +MRR EDKGT+SRYFSRR++ NVD++G PF EWLD+YAEFVL+RLQSF P+L +LAA+D+ T H+ A
Sbjct: 341 KDGGQAAWKEGPYWMTLHKLWRRMAERDYRTASKAVYVLHRLARGTTAESWGYFRSTLQEMRRDEDKGTKSRYFSRRVIS--------NVDDDGRPFSEWLDAYAEFVLLRLQSFSPELGELAAIDAETPHEKA 466
BLAST of mRNA_H-elongata_contig163663.4027.1 vs. uniprot
Match: A0A6H5L695_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L695_9PHAE) HSP 1 Score: 194 bits (492), Expect = 2.470e-55 Identity = 92/134 (68.66%), Postives = 111/134 (82.84%), Query Frame = 1
Query: 1 QDKSLAYWREGPYWMTLHKLWRRMAERDYRTAAKAVYVLHRVARDTTAESWGHFRATLLQMRRVEDKGTRSRYFSRRIVRRARYPCP*NVDEEGHPFREWLDSYAEFVLMRLQSFCPDLSDLAAVDSGTRHDDA 402
+D A W+EGPYWMTLHKLWRRMAERDYRTA+KAVYVLHR+AR TTAESWG+FR+TL +MRR EDKGT+SRYFSRR++ NVD++G PF EWLD+YAEFVL+RLQSF P+L +LAA+D+ T H+ A
Sbjct: 376 KDGGQAAWKEGPYWMTLHKLWRRMAERDYRTASKAVYVLHRLARGTTAESWGYFRSTLQEMRRDEDKGTKSRYFSRRVIS--------NVDDDGRPFSEWLDAYAEFVLLRLQSFSPELGELAAIDAETPHEKA 501
BLAST of mRNA_H-elongata_contig163663.4027.1 vs. uniprot
Match: A0A7S0SQZ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SQZ5_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 1.370e-12 Identity = 35/107 (32.71%), Postives = 67/107 (62.62%), Query Frame = 1
Query: 28 EGPYWMTLHKLWRRMAERDYRTAAKAVYVLHRVARDTTAESWGHFRATLLQMRRVED-KGTRSRYFSRRIVRRARYPCP*NVDEEGHPFREWLDSYAEFVLMRLQSF 345
+ PY MTLHK+W +M E+D+RT +K+ Y+LH + RD++ ES F + +M R + K +YF +++++ +D G+ +++++ +YA++VL R ++F
Sbjct: 132 DDPYHMTLHKIWTKMCEKDWRTVSKSFYLLHCIVRDSSVESCEEFTDAIKEMSRTRNPKKPDHKYFDLKLIKQ--------LDSFGNSYKDFVVAYAQYVLYRSKNF 230
BLAST of mRNA_H-elongata_contig163663.4027.1 vs. uniprot
Match: H6WB97_VAULI (ENTH domain-containing protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB97_VAULI) HSP 1 Score: 69.7 bits (169), Expect = 2.430e-11 Identity = 40/113 (35.40%), Postives = 67/113 (59.29%), Query Frame = 1
Query: 28 EGPYWMTLHKLWRRMAERDYRTAAKAVYVLHRVARDTTAESWGHFRATLLQMRRVEDKGTRSRYFSRRIVRRARYPCP*NVDEEGHPFREWLDSYAEFVLMRLQSFCPDLSDL 366
EGPY M L KLWR+M D+RT+ K++Y+LHR+A +T+AES+ HF T L++R + F + ++R+ P N ++ +++ A+FV R++ PD++ L
Sbjct: 134 EGPYHMLLLKLWRQMKSSDWRTSTKSLYILHRLAIETSAESYTHFHRTFLELR----ASVQPPPFEPKQIKRS----PQNNEK-----MKFIKKQAKFVFNRIEQISPDINSL 233
BLAST of mRNA_H-elongata_contig163663.4027.1 vs. uniprot
Match: A0A448ZTH1_9STRA (ENTH domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZTH1_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 4.010e-11 Identity = 38/112 (33.93%), Postives = 62/112 (55.36%), Query Frame = 1
Query: 37 YWMTLHKLWRRMAERDYRTAAKAVYVLHRVARDTTAESWGHFRATLLQMRRVEDKGTRSRYFSRRIVRRARYPCP*NVDEEGHPFREWLDSYAEFVLMRLQSFCPDLSDLAA 372
Y L KLW +MAE+D+RT KA+Y+LHR + D + E +A + ++RR D + ++FS +++ + EE +R +L YA +VL+R Q F ++AA
Sbjct: 268 YDAVLRKLWAKMAEKDWRTTIKALYILHRFSADGSPEHAPALKARVRELRRTRDPKRKGKFFSSKLLLAG------DTSEETAKYRAFLGRYAHYVLLRAQCFGGMFDEIAA 373
BLAST of mRNA_H-elongata_contig163663.4027.1 vs. uniprot
Match: A0A7S4VB79_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VB79_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 4.070e-11 Identity = 36/103 (34.95%), Postives = 56/103 (54.37%), Query Frame = 1
Query: 37 YWMTLHKLWRRMAERDYRTAAKAVYVLHRVARDTTAESWGHFRATLLQMRRVEDKGTRSRYFSRRIVRRARYPCP*NVDEEGHPFREWLDSYAEFVLMRLQSF 345
Y L KLW +MAE+D+RT KA+Y+LHR + D + +A L ++RR D + +YF+ + + + E PFR ++ YA +VL+R Q F
Sbjct: 326 YDAVLRKLWNKMAEKDWRTTIKALYILHRFSSDGGPDHQAALKARLRELRRTRDPKRKEKYFNSKQLLEG------DATPENQPFRAFMARYAHYVLLRAQCF 422
BLAST of mRNA_H-elongata_contig163663.4027.1 vs. uniprot
Match: A0A1E7FBW9_9STRA (ENTH domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FBW9_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 1.720e-10 Identity = 37/118 (31.36%), Postives = 64/118 (54.24%), Query Frame = 1
Query: 37 YWMTLHKLWRRMAERDYRTAAKAVYVLHRVARDTTAESWGHFRATLLQMRRVEDKGTRSRYFSRRIVRRARYPCP*NVDEEGHPFREWLDSYAEFVLMRLQSFCPDLSDLAAVDSGTR 390
Y L KLW +MAE+D+RT KA+Y+LHR + D + + +A + ++RR D + ++FS ++++ + E FR ++ YA +VL+R Q F ++AA S +
Sbjct: 78 YDAVLRKLWAKMAEKDWRTTIKALYILHRFSADGSPDHAPALKARVRELRRTRDPKRKGKFFSSKLLQAG------DDKPESAKFRAFMGRYAHYVLLRAQCFGGMFDEIAAPPSADK 189
BLAST of mRNA_H-elongata_contig163663.4027.1 vs. uniprot
Match: A0A7R9ZH59_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZH59_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 5.380e-10 Identity = 36/103 (34.95%), Postives = 55/103 (53.40%), Query Frame = 1
Query: 37 YWMTLHKLWRRMAERDYRTAAKAVYVLHRVARDTTAESWGHFRATLLQMRRVEDKGTRSRYFSRRIVRRARYPCP*NVDEEGHPFREWLDSYAEFVLMRLQSF 345
Y L KLW +MAE+D+RT KA+YVLHR + D + +A L ++RR D + +YF+ + + + E +R +L YA +VL+R Q F
Sbjct: 123 YDAVLRKLWSKMAEKDWRTKIKALYVLHRFSADGAPDHQAALKARLRELRRTRDPKRKEKYFNSKQLLGG------DASPENAKYRAFLARYAHYVLLRAQCF 219
BLAST of mRNA_H-elongata_contig163663.4027.1 vs. uniprot
Match: B7G2T5_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G2T5_PHATC) HSP 1 Score: 64.7 bits (156), Expect = 1.660e-9 Identity = 37/104 (35.58%), Postives = 57/104 (54.81%), Query Frame = 1
Query: 37 YWMTLHKLWRRMAERDYRTAAKAVYVLHRVARDTTAESWGHFRATLLQMRRVEDKGTRSRYF-SRRIVRRARYPCP*NVDEEGHPFREWLDSYAEFVLMRLQSF 345
Y L KLW +MAE+D+RT K++Y+LHR + D E +A L ++RR D + +YF S++++ P E FR ++ YA +VL+R Q F
Sbjct: 294 YDAVLRKLWGKMAEKDWRTTIKSLYILHRFSADGAPEHAAALKARLRELRRTRDPKRKDKYFNSKQLLAGESNP-------ENIKFRAFMSRYAHYVLLRAQCF 390
BLAST of mRNA_H-elongata_contig163663.4027.1 vs. uniprot
Match: A0A7S2BXP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BXP2_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 8.040e-9 Identity = 39/120 (32.50%), Postives = 61/120 (50.83%), Query Frame = 1
Query: 37 YWMTLHKLWRRMAERDYRTAAKAVYVLHRVARDTTAESWGHFRATLLQMRRVEDKGTRSRYFSRRIVRRARYPCP*NVDEEGHPF----REWLDSYAEFVLMRLQSFCPDLSDLAAVDSG 384
Y+M LHKLW RMAE D+RT AK++++ HR+A F +M+R+ K T++ Y++ + R D+ PF ++L +YA F R SF +L ++D G
Sbjct: 21 YFMMLHKLWSRMAEHDWRTVAKSLFIFHRMAVSVDPSLHLEFVQRFNRMQRLTHKKTKATYYNLETLLTVR-------DDGAAPFGPGTAKFLRAYAVFCFERFLSFSGRFEELDSLDEG 133 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig163663.4027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig163663.4027.1 >prot_H-elongata_contig163663.4027.1 ID=prot_H-elongata_contig163663.4027.1|Name=mRNA_H-elongata_contig163663.4027.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp MTLHKLWRRMAERDYRTAAKAVYVLHRVARDTTAESWGHFRATLLQMRRVback to top mRNA from alignment at H-elongata_contig163663:333..1374+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig163663.4027.1 ID=mRNA_H-elongata_contig163663.4027.1|Name=mRNA_H-elongata_contig163663.4027.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1042bp|location=Sequence derived from alignment at H-elongata_contig163663:333..1374+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig163663:333..1374+ >mRNA_H-elongata_contig163663.4027.1 ID=mRNA_H-elongata_contig163663.4027.1|Name=mRNA_H-elongata_contig163663.4027.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig163663:333..1374+ (Himanthalia elongata Himel1 dioecious)back to top |