mRNA_H-elongata_contig163663.4027.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig163663.4027.1
Unique NamemRNA_H-elongata_contig163663.4027.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig163663.4027.1 vs. uniprot
Match: D8LGM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM3_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 6.260e-56
Identity = 92/134 (68.66%), Postives = 111/134 (82.84%), Query Frame = 1
Query:    1 QDKSLAYWREGPYWMTLHKLWRRMAERDYRTAAKAVYVLHRVARDTTAESWGHFRATLLQMRRVEDKGTRSRYFSRRIVRRARYPCP*NVDEEGHPFREWLDSYAEFVLMRLQSFCPDLSDLAAVDSGTRHDDA 402
            +D   A W+EGPYWMTLHKLWRRMAERDYRTA+KAVYVLHR+AR TTAESWG+FR+TL +MRR EDKGT+SRYFSRR++         NVD++G PF EWLD+YAEFVL+RLQSF P+L +LAA+D+ T H+ A
Sbjct:  341 KDGGQAAWKEGPYWMTLHKLWRRMAERDYRTASKAVYVLHRLARGTTAESWGYFRSTLQEMRRDEDKGTKSRYFSRRVIS--------NVDDDGRPFSEWLDAYAEFVLLRLQSFSPELGELAAIDAETPHEKA 466          
BLAST of mRNA_H-elongata_contig163663.4027.1 vs. uniprot
Match: A0A6H5L695_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L695_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 2.470e-55
Identity = 92/134 (68.66%), Postives = 111/134 (82.84%), Query Frame = 1
Query:    1 QDKSLAYWREGPYWMTLHKLWRRMAERDYRTAAKAVYVLHRVARDTTAESWGHFRATLLQMRRVEDKGTRSRYFSRRIVRRARYPCP*NVDEEGHPFREWLDSYAEFVLMRLQSFCPDLSDLAAVDSGTRHDDA 402
            +D   A W+EGPYWMTLHKLWRRMAERDYRTA+KAVYVLHR+AR TTAESWG+FR+TL +MRR EDKGT+SRYFSRR++         NVD++G PF EWLD+YAEFVL+RLQSF P+L +LAA+D+ T H+ A
Sbjct:  376 KDGGQAAWKEGPYWMTLHKLWRRMAERDYRTASKAVYVLHRLARGTTAESWGYFRSTLQEMRRDEDKGTKSRYFSRRVIS--------NVDDDGRPFSEWLDAYAEFVLLRLQSFSPELGELAAIDAETPHEKA 501          
BLAST of mRNA_H-elongata_contig163663.4027.1 vs. uniprot
Match: A0A7S0SQZ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SQZ5_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.370e-12
Identity = 35/107 (32.71%), Postives = 67/107 (62.62%), Query Frame = 1
Query:   28 EGPYWMTLHKLWRRMAERDYRTAAKAVYVLHRVARDTTAESWGHFRATLLQMRRVED-KGTRSRYFSRRIVRRARYPCP*NVDEEGHPFREWLDSYAEFVLMRLQSF 345
            + PY MTLHK+W +M E+D+RT +K+ Y+LH + RD++ ES   F   + +M R  + K    +YF  +++++        +D  G+ +++++ +YA++VL R ++F
Sbjct:  132 DDPYHMTLHKIWTKMCEKDWRTVSKSFYLLHCIVRDSSVESCEEFTDAIKEMSRTRNPKKPDHKYFDLKLIKQ--------LDSFGNSYKDFVVAYAQYVLYRSKNF 230          
BLAST of mRNA_H-elongata_contig163663.4027.1 vs. uniprot
Match: H6WB97_VAULI (ENTH domain-containing protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB97_VAULI)

HSP 1 Score: 69.7 bits (169), Expect = 2.430e-11
Identity = 40/113 (35.40%), Postives = 67/113 (59.29%), Query Frame = 1
Query:   28 EGPYWMTLHKLWRRMAERDYRTAAKAVYVLHRVARDTTAESWGHFRATLLQMRRVEDKGTRSRYFSRRIVRRARYPCP*NVDEEGHPFREWLDSYAEFVLMRLQSFCPDLSDL 366
            EGPY M L KLWR+M   D+RT+ K++Y+LHR+A +T+AES+ HF  T L++R       +   F  + ++R+    P N ++      +++   A+FV  R++   PD++ L
Sbjct:  134 EGPYHMLLLKLWRQMKSSDWRTSTKSLYILHRLAIETSAESYTHFHRTFLELR----ASVQPPPFEPKQIKRS----PQNNEK-----MKFIKKQAKFVFNRIEQISPDINSL 233          
BLAST of mRNA_H-elongata_contig163663.4027.1 vs. uniprot
Match: A0A448ZTH1_9STRA (ENTH domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZTH1_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 4.010e-11
Identity = 38/112 (33.93%), Postives = 62/112 (55.36%), Query Frame = 1
Query:   37 YWMTLHKLWRRMAERDYRTAAKAVYVLHRVARDTTAESWGHFRATLLQMRRVEDKGTRSRYFSRRIVRRARYPCP*NVDEEGHPFREWLDSYAEFVLMRLQSFCPDLSDLAA 372
            Y   L KLW +MAE+D+RT  KA+Y+LHR + D + E     +A + ++RR  D   + ++FS +++         +  EE   +R +L  YA +VL+R Q F     ++AA
Sbjct:  268 YDAVLRKLWAKMAEKDWRTTIKALYILHRFSADGSPEHAPALKARVRELRRTRDPKRKGKFFSSKLLLAG------DTSEETAKYRAFLGRYAHYVLLRAQCFGGMFDEIAA 373          
BLAST of mRNA_H-elongata_contig163663.4027.1 vs. uniprot
Match: A0A7S4VB79_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VB79_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 4.070e-11
Identity = 36/103 (34.95%), Postives = 56/103 (54.37%), Query Frame = 1
Query:   37 YWMTLHKLWRRMAERDYRTAAKAVYVLHRVARDTTAESWGHFRATLLQMRRVEDKGTRSRYFSRRIVRRARYPCP*NVDEEGHPFREWLDSYAEFVLMRLQSF 345
            Y   L KLW +MAE+D+RT  KA+Y+LHR + D   +     +A L ++RR  D   + +YF+ + +         +   E  PFR ++  YA +VL+R Q F
Sbjct:  326 YDAVLRKLWNKMAEKDWRTTIKALYILHRFSSDGGPDHQAALKARLRELRRTRDPKRKEKYFNSKQLLEG------DATPENQPFRAFMARYAHYVLLRAQCF 422          
BLAST of mRNA_H-elongata_contig163663.4027.1 vs. uniprot
Match: A0A1E7FBW9_9STRA (ENTH domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FBW9_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.720e-10
Identity = 37/118 (31.36%), Postives = 64/118 (54.24%), Query Frame = 1
Query:   37 YWMTLHKLWRRMAERDYRTAAKAVYVLHRVARDTTAESWGHFRATLLQMRRVEDKGTRSRYFSRRIVRRARYPCP*NVDEEGHPFREWLDSYAEFVLMRLQSFCPDLSDLAAVDSGTR 390
            Y   L KLW +MAE+D+RT  KA+Y+LHR + D + +     +A + ++RR  D   + ++FS ++++        +   E   FR ++  YA +VL+R Q F     ++AA  S  +
Sbjct:   78 YDAVLRKLWAKMAEKDWRTTIKALYILHRFSADGSPDHAPALKARVRELRRTRDPKRKGKFFSSKLLQAG------DDKPESAKFRAFMGRYAHYVLLRAQCFGGMFDEIAAPPSADK 189          
BLAST of mRNA_H-elongata_contig163663.4027.1 vs. uniprot
Match: A0A7R9ZH59_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZH59_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 5.380e-10
Identity = 36/103 (34.95%), Postives = 55/103 (53.40%), Query Frame = 1
Query:   37 YWMTLHKLWRRMAERDYRTAAKAVYVLHRVARDTTAESWGHFRATLLQMRRVEDKGTRSRYFSRRIVRRARYPCP*NVDEEGHPFREWLDSYAEFVLMRLQSF 345
            Y   L KLW +MAE+D+RT  KA+YVLHR + D   +     +A L ++RR  D   + +YF+ + +         +   E   +R +L  YA +VL+R Q F
Sbjct:  123 YDAVLRKLWSKMAEKDWRTKIKALYVLHRFSADGAPDHQAALKARLRELRRTRDPKRKEKYFNSKQLLGG------DASPENAKYRAFLARYAHYVLLRAQCF 219          
BLAST of mRNA_H-elongata_contig163663.4027.1 vs. uniprot
Match: B7G2T5_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G2T5_PHATC)

HSP 1 Score: 64.7 bits (156), Expect = 1.660e-9
Identity = 37/104 (35.58%), Postives = 57/104 (54.81%), Query Frame = 1
Query:   37 YWMTLHKLWRRMAERDYRTAAKAVYVLHRVARDTTAESWGHFRATLLQMRRVEDKGTRSRYF-SRRIVRRARYPCP*NVDEEGHPFREWLDSYAEFVLMRLQSF 345
            Y   L KLW +MAE+D+RT  K++Y+LHR + D   E     +A L ++RR  D   + +YF S++++     P       E   FR ++  YA +VL+R Q F
Sbjct:  294 YDAVLRKLWGKMAEKDWRTTIKSLYILHRFSADGAPEHAAALKARLRELRRTRDPKRKDKYFNSKQLLAGESNP-------ENIKFRAFMSRYAHYVLLRAQCF 390          
BLAST of mRNA_H-elongata_contig163663.4027.1 vs. uniprot
Match: A0A7S2BXP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BXP2_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 8.040e-9
Identity = 39/120 (32.50%), Postives = 61/120 (50.83%), Query Frame = 1
Query:   37 YWMTLHKLWRRMAERDYRTAAKAVYVLHRVARDTTAESWGHFRATLLQMRRVEDKGTRSRYFSRRIVRRARYPCP*NVDEEGHPF----REWLDSYAEFVLMRLQSFCPDLSDLAAVDSG 384
            Y+M LHKLW RMAE D+RT AK++++ HR+A          F     +M+R+  K T++ Y++   +   R       D+   PF     ++L +YA F   R  SF     +L ++D G
Sbjct:   21 YFMMLHKLWSRMAEHDWRTVAKSLFIFHRMAVSVDPSLHLEFVQRFNRMQRLTHKKTKATYYNLETLLTVR-------DDGAAPFGPGTAKFLRAYAVFCFERFLSFSGRFEELDSLDEG 133          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig163663.4027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LGM3_ECTSI6.260e-5668.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L695_9PHAE2.470e-5568.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0SQZ5_9STRA1.370e-1232.71Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
H6WB97_VAULI2.430e-1135.40ENTH domain-containing protein n=1 Tax=Vaucheria l... [more]
A0A448ZTH1_9STRA4.010e-1133.93ENTH domain-containing protein n=1 Tax=Pseudo-nitz... [more]
A0A7S4VB79_9STRA4.070e-1134.95Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1E7FBW9_9STRA1.720e-1031.36ENTH domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7R9ZH59_9STRA5.380e-1034.95Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
B7G2T5_PHATC1.660e-935.58Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2BXP2_9STRA8.040e-932.50Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig163663contigH-elongata_contig163663:333..1374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue7.9e-24
Seed eggNOG ortholog2880.D8LGM3
EggNOG OGs2ECB5@1,2SI7J@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionENTH/VHS
Ec32 orthologEc-10_002760.1
Exons2
Model size402
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig163663.4027.1prot_H-elongata_contig163663.4027.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig163663 375..1236 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929957.5474782-UTR-H-elongata_contig163663:332..3741622929957.5474782-UTR-H-elongata_contig163663:332..374Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig163663 333..374 +
1691679223.178653-UTR-H-elongata_contig163663:332..3741691679223.178653-UTR-H-elongata_contig163663:332..374Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig163663 333..374 +
1622929957.5868926-UTR-H-elongata_contig163663:1236..13741622929957.5868926-UTR-H-elongata_contig163663:1236..1374Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig163663 1237..1374 +
1691679223.2064807-UTR-H-elongata_contig163663:1236..13741691679223.2064807-UTR-H-elongata_contig163663:1236..1374Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig163663 1237..1374 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929957.559715-CDS-H-elongata_contig163663:374..5951622929957.559715-CDS-H-elongata_contig163663:374..595Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163663 375..595 +
1691679223.188017-CDS-H-elongata_contig163663:374..5951691679223.188017-CDS-H-elongata_contig163663:374..595Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163663 375..595 +
1622929957.5744617-CDS-H-elongata_contig163663:1235..12361622929957.5744617-CDS-H-elongata_contig163663:1235..1236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163663 1236..1236 +
1691679223.1971734-CDS-H-elongata_contig163663:1235..12361691679223.1971734-CDS-H-elongata_contig163663:1235..1236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163663 1236..1236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig163663.4027.1

>prot_H-elongata_contig163663.4027.1 ID=prot_H-elongata_contig163663.4027.1|Name=mRNA_H-elongata_contig163663.4027.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MTLHKLWRRMAERDYRTAAKAVYVLHRVARDTTAESWGHFRATLLQMRRV
EDKGTRSRYFSRRIVRRARYPCP*
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mRNA from alignment at H-elongata_contig163663:333..1374+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig163663.4027.1 ID=mRNA_H-elongata_contig163663.4027.1|Name=mRNA_H-elongata_contig163663.4027.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1042bp|location=Sequence derived from alignment at H-elongata_contig163663:333..1374+ (Himanthalia elongata Himel1 dioecious)
CAGGACAAGAGCCTAGCCTACTGGAGAGAGGGCCCGTACTGGATGACCCT CCACAAGCTCTGGAGGAGGATGGCGGAGAGAGACTATCGAACGGCGGCCA AGGCGGTTTACGTGCTGCATAGGGTGGCGAGGGACACTACCGCCGAGAGC TGGGGCCACTTCCGCGCCACCCTTTTGCAGATGCGGCGCGTGGAGGACAA GGGCACAAGGAGCCGCTACTTCAGCCGCCGAATCGTCAGGCGCGCGCGCT ACCCCTGCCCTTAGTAACCCCTAATCATAACCCGACGATCGATGCTCTGG ATTTCGACGTGTTCTGTATCCCTCTCCTCCCCTTTAGTTTTACTTCAGGG AGGGGGGTTGAAGGGGGGCGTGCTAAACGTTTCCGTGCTGTTAGACCATT TAGGGGAGGGTGAGGGTTTGTCCTTTGTATGTTTGATCGGATTCCGGCTG TCACCCTTGATTATTATTGATTTTAACGCCATGTCTAAAGACACTTTTGA CAATTTGAAGTATCGAGGAAAAGCCTAGTATGATTGGATATAGAAAGGCA AGATCCCGTTTTCCCCAGAAACGTGTCGCGAGGAACGATATTTTGTTTCC TTGTCGTGGCTATCGAACGAGCCCACCAATAGAGCCAGTTACAGGCCCGT GTAGGTCGTATAGTTCGTTGCAGTACCGTAGATGTCCGTGACTTGTGATT TCATGTCATATCATCTCCCTCCCACCTTCACGAAACCCCCCCCAACACGT CCCGCTTTTGCTCCAAACGAATGGATCAACGGACGAATCGGCTTTTTGAC GGCCAACGGGTCGGATTCGATCGGCTCAACACACGGGTCGGAATCATCGG ACGGATTTGGTCAACGGACGGGTCGGATCAACAAAATATCAACGGACGGA CAGGAACGTGGACGAGGAAGGCCATCCGTTTCGTGAGTGGCTGGACAGCT ACGCCGAGTTCGTCCTGATGCGGCTGCAATCGTTCTGTCCAGACCTGTCT GACCTGGCCGCTGTGGACTCGGGCACCAGGCACGATGACGCG
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Coding sequence (CDS) from alignment at H-elongata_contig163663:333..1374+

>mRNA_H-elongata_contig163663.4027.1 ID=mRNA_H-elongata_contig163663.4027.1|Name=mRNA_H-elongata_contig163663.4027.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig163663:333..1374+ (Himanthalia elongata Himel1 dioecious)
ATGACCCTCCACAAGCTCTGGAGGAGGATGGCGGAGAGAGACTATCGAAC
GGCGGCCAAGGCGGTTTACGTGCTGCATAGGGTGGCGAGGGACACTACCG
CCGAGAGCTGGGGCCACTTCCGCGCCACCCTTTTGCAGATGCGGCGCGTG
GAGGACAAGGGCACAAGGAGCCGCTACTTCAGCCGCCGAATCGTCAGGCG
CGCGCGCTACCCCTGCCCTTAATGACCCTCCACAAGCTCTGGAGGAGGAT
GGCGGAGAGAGACTATCGAACGGCGGCCAAGGCGGTTTACGTGCTGCATA
GGGTGGCGAGGGACACTACCGCCGAGAGCTGGGGCCACTTCCGCGCCACC
CTTTTGCAGATGCGGCGCGTGGAGGACAAGGGCACAAGGAGCCGCTACTT
CAGCCGCCGAATCGTCAGGCGCGCGCGCTACCCCTGCCCTTAGG
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