mRNA_H-elongata_contig162790.3982.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig162790.3982.1
Unique NamemRNA_H-elongata_contig162790.3982.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig162790.3982.1 vs. uniprot
Match: A0A2Z4C3U8_SACJA (Mannitol-1-phosphate dehydrogenase 1 n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2Z4C3U8_SACJA)

HSP 1 Score: 111 bits (277), Expect = 3.030e-27
Identity = 51/55 (92.73%), Postives = 55/55 (100.00%), Query Frame = 1
Query:    1 QVVILQPPPMAPLPAFAGENVKVPMTYGEANYFCRRKITMVNGMHTTLAFMTLCR 165
            +VVILQPPPMAPLPAFAG+NVKVPMTYGEANYFCRRKITMVNGMHTTLAF+TLC+
Sbjct:  361 EVVILQPPPMAPLPAFAGDNVKVPMTYGEANYFCRRKITMVNGMHTTLAFLTLCK 415          
BLAST of mRNA_H-elongata_contig162790.3982.1 vs. uniprot
Match: D7FMJ8_ECTSI (Mannitol 1-phosphate dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMJ8_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.110e-24
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 1
Query:    1 QVVILQPPPMAPLPAFAGENVKVPMTYGEANYFCRRKITMVNGMHTTLAFMTLCR 165
            +VVILQPP  APLPAFAG+NV VPMTYGEANYFCRRKITMVNGMHTTLAF+TLCR
Sbjct:  321 EVVILQPPVAAPLPAFAGDNVMVPMTYGEANYFCRRKITMVNGMHTTLAFITLCR 375          
BLAST of mRNA_H-elongata_contig162790.3982.1 vs. uniprot
Match: B7ZGN5_9PHAE (Mannitol-1-phosphate dehydrogenase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGN5_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.650e-22
Identity = 42/45 (93.33%), Postives = 45/45 (100.00%), Query Frame = 1
Query:   31 APLPAFAGENVKVPMTYGEANYFCRRKITMVNGMHTTLAFMTLCR 165
            APLPAFAG+NVKVPMTYGEANYFCRRKITMVNGMHTTLAF+TLC+
Sbjct:    4 APLPAFAGDNVKVPMTYGEANYFCRRKITMVNGMHTTLAFLTLCK 48          
BLAST of mRNA_H-elongata_contig162790.3982.1 vs. uniprot
Match: D8LI09_ECTSI (Mannitol 1-phosphate dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI09_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 2.220e-15
Identity = 34/56 (60.71%), Postives = 45/56 (80.36%), Query Frame = 1
Query:    1 QVVILQPPPMAPLPAFAGENVKVPMTYGEANYFCRRKITMVNGMHTTLAFMTLCRL 168
            ++V++ PP  APLP F G++V++P    EA YFCRRKI +VNGMHTTLAF+TLC+L
Sbjct:  338 EIVVIAPPQGAPLPPFKGDHVQIPRIPAEAEYFCRRKILLVNGMHTTLAFITLCKL 393          
BLAST of mRNA_H-elongata_contig162790.3982.1 vs. uniprot
Match: A0A0G4I719_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I719_9ALVE)

HSP 1 Score: 77.0 bits (188), Expect = 4.160e-15
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 1
Query:    1 QVVILQPPPMAPLPAFAGENVKVPMTYGEANYFCRRKITMVNGMHTTLAFMTLCR 165
            ++V+L PP  AP PAF G NV++P+   +A YFC+RKI  VNGMHTTLAFMTLC+
Sbjct:  353 EIVVLSPPEDAPRPAFVGGNVQIPILEAQARYFCQRKILCVNGMHTTLAFMTLCK 407          
BLAST of mRNA_H-elongata_contig162790.3982.1 vs. uniprot
Match: A0A836CC36_9STRA (Mannitol 1-phosphate dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC36_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.280e-13
Identity = 35/53 (66.04%), Postives = 41/53 (77.36%), Query Frame = 1
Query:    1 QVVILQPPPMAPLPAFAGENVKVPMTYGEANYFCRRKITMVNGMHTTLAFMTL 159
            ++VIL PP  APLPAF G NV  P +   A+YFCRRKI +VNGMHTTLAFM+L
Sbjct:  322 EIVILNPPLGAPLPAFKGPNVMAPDSQATADYFCRRKIGLVNGMHTTLAFMSL 374          
BLAST of mRNA_H-elongata_contig162790.3982.1 vs. uniprot
Match: A0A835YRM5_9STRA (Mannitol 1-phosphate dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRM5_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.400e-13
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 1
Query:    1 QVVILQPPPMAPLPAFAGENVKVPMTYGEANYFCRRKITMVNGMHTTLAFMTLCR 165
            +VV++ PP  APLP   G+N++ P    EA Y+C+RK+ MVNGMHT LAFMTLC+
Sbjct:  320 EVVVITPPKTAPLPPLGGDNIRWPKIAAEAEYWCQRKLLMVNGMHTCLAFMTLCK 374          
BLAST of mRNA_H-elongata_contig162790.3982.1 vs. uniprot
Match: A0A7S4LFU9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LFU9_9EUGL)

HSP 1 Score: 70.5 bits (171), Expect = 8.410e-13
Identity = 33/52 (63.46%), Postives = 38/52 (73.08%), Query Frame = 1
Query:    4 VVILQPPPMAPLPAFAGENVKVPMTYGEANYFCRRKITMVNGMHTTLAFMTL 159
            VV++ PP  APLPAFAG  V +P T   A Y CRRK+  VNGMHTTLAF+TL
Sbjct:  383 VVVMSPPWCAPLPAFAGPTVAIPETQAAAQYLCRRKLLTVNGMHTTLAFLTL 434          
BLAST of mRNA_H-elongata_contig162790.3982.1 vs. uniprot
Match: A0A0G4FY26_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FY26_9ALVE)

HSP 1 Score: 68.9 bits (167), Expect = 2.920e-12
Identity = 33/55 (60.00%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    1 QVVILQPPPMAPLPAFAGENVKVPMTYGEANYFCRRKITMVNGMHTTLAFMTLCR 165
            ++V+L PP  A +PAF G NV  P    EA+YFC RK  MVNGMHTTLAFMTL +
Sbjct:  314 EIVLLSPPEHAQMPAFRGNNVHCPEDEREAHYFCERKKLMVNGMHTTLAFMTLAK 368          
BLAST of mRNA_H-elongata_contig162790.3982.1 vs. uniprot
Match: A0A7S3XNG1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNG1_HETAK)

HSP 1 Score: 67.0 bits (162), Expect = 5.900e-12
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 1
Query:    4 VVILQPPPMAPLPAFAGENVKVPMTYGEANYFCRRKITMVNGMHTTLAFMTLC 162
            +V+  PP  AP+P F G+   +P    E +Y CRRK  MVNGMHTTLAFMTLC
Sbjct:   39 IVVQAPPAWAPMPPFKGDAPLIPKIKAETSYLCRRKFMMVNGMHTTLAFMTLC 91          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig162790.3982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A2Z4C3U8_SACJA3.030e-2792.73Mannitol-1-phosphate dehydrogenase 1 n=1 Tax=Sacch... [more]
D7FMJ8_ECTSI1.110e-2489.09Mannitol 1-phosphate dehydrogenase n=2 Tax=Ectocar... [more]
B7ZGN5_9PHAE1.650e-2293.33Mannitol-1-phosphate dehydrogenase (Fragment) n=1 ... [more]
D8LI09_ECTSI2.220e-1560.71Mannitol 1-phosphate dehydrogenase n=2 Tax=Ectocar... [more]
A0A0G4I719_9ALVE4.160e-1561.82Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A836CC36_9STRA1.280e-1366.04Mannitol 1-phosphate dehydrogenase n=1 Tax=Tribone... [more]
A0A835YRM5_9STRA2.400e-1356.36Mannitol 1-phosphate dehydrogenase n=1 Tax=Tribone... [more]
A0A7S4LFU9_9EUGL8.410e-1363.46Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A0G4FY26_9ALVE2.920e-1260.00Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7S3XNG1_HETAK5.900e-1256.60Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig162790contigH-elongata_contig162790:722..889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue3.5e-17
Seed eggNOG ortholog2880.D7FMJ8
EggNOG OGs2BX5V@1,2S2EN@2759
Ec32 ortholog descriptionmannitol 1-phosphate dehydrogenase
Ec32 orthologEc-23_000570.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size141
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929952.1906435-CDS-H-elongata_contig162790:721..8621622929952.1906435-CDS-H-elongata_contig162790:721..862Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162790 722..862 -
1691679220.9295275-CDS-H-elongata_contig162790:721..8621691679220.9295275-CDS-H-elongata_contig162790:721..862Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162790 722..862 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929952.2086558-UTR-H-elongata_contig162790:862..8891622929952.2086558-UTR-H-elongata_contig162790:862..889Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig162790 863..889 -
1691679220.9409292-UTR-H-elongata_contig162790:862..8891691679220.9409292-UTR-H-elongata_contig162790:862..889Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig162790 863..889 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig162790.3982.1prot_H-elongata_contig162790.3982.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig162790 722..862 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig162790.3982.1

>prot_H-elongata_contig162790.3982.1 ID=prot_H-elongata_contig162790.3982.1|Name=mRNA_H-elongata_contig162790.3982.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
MAPLPAFAGENVKVPMTYGEANYFCRRKITMVNGMHTTLAFMTLCRL
back to top

mRNA from alignment at H-elongata_contig162790:722..889-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig162790.3982.1 ID=mRNA_H-elongata_contig162790.3982.1|Name=mRNA_H-elongata_contig162790.3982.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=168bp|location=Sequence derived from alignment at H-elongata_contig162790:722..889- (Himanthalia elongata Himel1 dioecious)
CAGGTTGTGATCCTGCAGCCTCCACCGATGGCGCCGTTGCCAGCTTTTGC CGGAGAGAATGTGAAGGTTCCCATGACATACGGAGAGGCGAACTACTTCT GCCGTCGCAAGATCACGATGGTCAACGGGATGCACACCACCCTGGCCTTC ATGACGCTCTGCAGGTTA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig162790:722..889-

>mRNA_H-elongata_contig162790.3982.1 ID=mRNA_H-elongata_contig162790.3982.1|Name=mRNA_H-elongata_contig162790.3982.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig162790:722..889- (Himanthalia elongata Himel1 dioecious)
ATGGCGCCGTTGCCAGCTTTTGCCGGAGAGAATGTGAAGGTTCCCATGAC
ATACGGAGAGGCGAACTACTTCTGCCGTCGCAAGATCACGATGGTCAACG
GGATGCACACCACCCTGGCCTTCATGACGCTCTGCAGGTTAATGGCGCCG
TTGCCAGCTTTTGCCGGAGAGAATGTGAAGGTTCCCATGACATACGGAGA
GGCGAACTACTTCTGCCGTCGCAAGATCACGATGGTCAACGGGATGCACA
CCACCCTGGCCTTCATGACGCTCTGCAGGTTA
back to top