mRNA_H-elongata_contig162549.3969.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig162549.3969.1
Unique NamemRNA_H-elongata_contig162549.3969.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig162549.3969.1 vs. uniprot
Match: D7FVT2_ECTSI (RNase_PH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT2_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 1.680e-53
Identity = 102/126 (80.95%), Postives = 112/126 (88.89%), Query Frame = 1
Query:    1 QVIVDDGAVLSAALNASTLALLNAGVEMTGIALSLTCCITGISGSGIGRSVILDPSKAEESEAIATAVVATLSASGGVLSCRAVGAMSKEEYFACCEAAAQGTTAVRSFVRLSAEQKILREAETVR 378
            QVIVDDGAVLSAALNA+T+ALLNAGVEMTG+ALS+TCCIT       GRSV+LDP KAEE +A ATAVVATLSA GGVLSC AVG+MS+EEYFACCEAA+ GTTAVRSFVRLSAEQK+ REAETVR
Sbjct:  108 QVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITATVS---GRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCHAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQKVNREAETVR 230          
BLAST of mRNA_H-elongata_contig162549.3969.1 vs. uniprot
Match: A0A835ZF16_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF16_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.470e-16
Identity = 56/132 (42.42%), Postives = 83/132 (62.88%), Query Frame = 1
Query:    1 QVIVDDGAVLSAALNASTLALLNAGVEMTGIALSLTCCITGISGSG----------IGRSVI-LDPSKAEESEAIATAVVATLSASGGVLSCRAVGAMSKEEYFACCEAAAQGTTAVRSFVRLSAEQKILRE 363
            QV+ DDG+VLSAA+NA  +AL++AGVEM G+ ++ T C +G SGS           +G S + LDPS +EE+   AT ++A L+ S G+L+ +  G +  EE FA  EAA +   AV  ++R + E K+LR+
Sbjct:  109 QVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSG-SGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMKMTGQLGAEELFAASEAARKACDAVSVYLRRAVEAKVLRD 239          
BLAST of mRNA_H-elongata_contig162549.3969.1 vs. uniprot
Match: F0W748_9STRA (Uncharacterized protein AlNc14C28G2677 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W748_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 4.410e-11
Identity = 43/111 (38.74%), Postives = 69/111 (62.16%), Query Frame = 1
Query:   28 LSAALNASTLALLNAGVEMTGIALSLTCCITGISGSGIGRSVILDPSKAEESEAIATAVVATLS--ASGGVLSCRAVGAMSKEEYFACCEAAAQGTTAVRSFVRLSAEQKI 354
            +SA +NA T+AL++A + M G+  S TCC+T         SV+LDPS+ EE+E I+  + A+    A GGVL   + G +S+E+ F+C EA  +G+  V +F+R S  +++
Sbjct:  143 VSAVINAVTMALMDAEIAMLGVVTSTTCCLTE------DGSVLLDPSQKEEAECISLVICASSFQLAEGGVLFLSSEGPLSEEQLFSCAEACKRGSKCVETFIRQSYSKRL 247          
BLAST of mRNA_H-elongata_contig162549.3969.1 vs. uniprot
Match: A0A3R7JMF0_9STRA (RNase_PH_C domain-containing protein (Fragment) n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JMF0_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.720e-10
Identity = 42/108 (38.89%), Postives = 67/108 (62.04%), Query Frame = 1
Query:   28 LSAALNASTLALLNAGVEMTGIALSLTCCITGISGSGIGRSVILDPSKAEESEAIATAVVATLSASGGVLSCRAVGAMSKEEYFACCEAAAQGTTAVRSFVRLSAEQK 351
            L+ A+NA +LALL+AGV M  +  + +C   GI   G   ++ LDP+  EE +A++    A  S+S GVL+C   G +S+E+YFAC EA  + + +V +F R+  ++K
Sbjct:   44 LAVAINAVSLALLDAGVPMLAVVTATSC---GIFPDG---NMYLDPTSVEEEQAVSWVTTARSSSSDGVLTCITNGLLSEEQYFACSEACQRASESVAAFFRIVQQKK 145          
BLAST of mRNA_H-elongata_contig162549.3969.1 vs. uniprot
Match: Q54Q83_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54Q83_DICDI)

HSP 1 Score: 65.1 bits (157), Expect = 3.780e-10
Identity = 38/119 (31.93%), Postives = 74/119 (62.18%), Query Frame = 1
Query:    1 QVIVDDGAVLSAALNASTLALLNAGVEMTGIALSLTCCITGISGSGIGRSVILDPSKAEESEAIATAVVATLSASGGVLSCRAVGAMSKEEYFACCEAAAQGTTAVRSFVRLSAEQKIL 357
            QV  DDG+++S A+NA+ LALL+AG+EM G+  S+T C           S+ +DPS  EE+++ A A+ +  S +  ++  + +G +++++YF   + A++    + SF++L+ + +I+
Sbjct:  110 QVFSDDGSIVSCAINAACLALLDAGIEMNGLLGSVTLCFNN------DGSIYVDPSTEEENQSKAIAIYSFSSINKNIVLSKTIGTLTEDQYFKGLDKASESCDLIISFIKLAVKNRIM 222          
BLAST of mRNA_H-elongata_contig162549.3969.1 vs. uniprot
Match: A0A833WKX0_PHYIN (3' exoribonuclease family domain 2 n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WKX0_PHYIN)

HSP 1 Score: 63.9 bits (154), Expect = 1.170e-9
Identity = 45/125 (36.00%), Postives = 72/125 (57.60%), Query Frame = 1
Query:    1 QVIVDDGAV--------LSAALNASTLALLNAGVEMTGIALSLTCCITGISGSGIGRSVILDPSKAEESEAIATAVVATLSASGGVLSCRAVGAMSKEEYFACCEAAAQGTTAVRSFVRLSAEQK 351
            QVI D+G++         + A+NA +LAL++AGV M  +  + +C I          ++ LDP+ AEE EA++    A  S S GVL+C   G +S+E+YFAC EA  + + +V +F R+  ++K
Sbjct:  125 QVIEDNGSISFPLFLIIAALAINAVSLALMDAGVPMLSVVTATSCSIFD------DGNLYLDPTAAEEEEAVSWVTTARSSTSDGVLTCITNGLLSEEQYFACSEACQRASESVAAFFRIVQQKK 243          
BLAST of mRNA_H-elongata_contig162549.3969.1 vs. uniprot
Match: A0A6G0WBP6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WBP6_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.760e-9
Identity = 44/117 (37.61%), Postives = 63/117 (53.85%), Query Frame = 1
Query:    1 QVIVDDGAVLSAALNASTLALLNAGVEMTGIALSLTCCITGISGSGIGRSVILDPSKAEESEAIATAVVATLSASGGVLSCRAVGAMSKEEYFACCEAAAQGTTAVRSFVRLSAEQK 351
            QV+ DDG++LS A+NA  LALL+AG+ M  +  ++TC I             LD S  E   A+A+   A    + G+L+    G +S+  YFAC E   +   +V SFVR+S E K
Sbjct:  112 QVVEDDGSLLSVAINAMNLALLDAGIPMRCLVGAVTCSILD------DGQFCLDSSLTEGEAAVASVTSACAGNNDGILTSLTTGVLSESHYFACSEICRRAVGSVLSFVRISQETK 222          
BLAST of mRNA_H-elongata_contig162549.3969.1 vs. uniprot
Match: A0A0P1AC34_PLAHL (Exosomal 3'-5' exoribonuclease complex, subunit Rrp46 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AC34_PLAHL)

HSP 1 Score: 61.2 bits (147), Expect = 5.210e-9
Identity = 38/108 (35.19%), Postives = 66/108 (61.11%), Query Frame = 1
Query:   28 LSAALNASTLALLNAGVEMTGIALSLTCCITGISGSGIGRSVILDPSKAEESEAIATAVVATLSASGGVLSCRAVGAMSKEEYFACCEAAAQGTTAVRSFVRLSAEQK 351
            +S A+NA +LAL++AGV M  +  + +C I       +  ++ LDP+ AEE +A++  + A   ++ GVL+C   G +S+E+YFAC EA  + + +V  F R+  ++K
Sbjct:   76 ISIAINAVSLALMDAGVPMASVVTATSCSIA------MDGNLYLDPTSAEEEKAVSWVISARSCSNDGVLTCITNGLLSEEQYFACSEACQRASESVAVFFRIVHQKK 177          
BLAST of mRNA_H-elongata_contig162549.3969.1 vs. uniprot
Match: A0A5D6XHQ5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHQ5_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 8.290e-9
Identity = 43/108 (39.81%), Postives = 64/108 (59.26%), Query Frame = 1
Query:   28 LSAALNASTLALLNAGVEMTGIALSLTCCITGISGSGIGRSVILDPSKAEESEAIATAVVATLSASGGVLSCRAVGAMSKEEYFACCEAAAQGTTAVRSFVRLSAEQK 351
            LS A+NA +LALL+AGV MT +  S TC   G+   G   ++ LDPS+AEE  + +    A  S S  VL+    G +++E+YFAC EA  +   +V +F R+  ++K
Sbjct:  111 LSVAINAVSLALLDAGVPMTSVVTSATC---GLLPDG---TLFLDPSQAEEELSTSLVTTACSSTSDSVLTSLTNGLLTEEQYFACSEACRRAAESVHAFFRIVQQKK 212          
BLAST of mRNA_H-elongata_contig162549.3969.1 vs. uniprot
Match: K3WUR4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WUR4_GLOUD)

HSP 1 Score: 61.2 bits (147), Expect = 8.390e-9
Identity = 45/113 (39.82%), Postives = 67/113 (59.29%), Query Frame = 1
Query:   28 LSAALNASTLALLNAGVEMTGIALSLTCCITGISGSGIGRSVILDPSKAEESEAIATAVVATLSASGGVLSCRAVGAMSKEEYFACCEAAAQGTTAVRSFVRLSAEQKILREA 366
            LS A+NA +LALL+AGV M  I  S TC   G+   G   ++ LDPS AEE  + +    A  S + GVL+    G +++E+YFAC EA  + + +V +F+R+  ++K   EA
Sbjct:  113 LSVAINAVSLALLDAGVPMLSIVTSATC---GLLPDG---NLFLDPSLAEEELSTSLVTTACSSTNDGVLTSLTKGLLTEEQYFACSEACQRASESVHAFLRIVQQKKYPIEA 219          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig162549.3969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVT2_ECTSI1.680e-5380.95RNase_PH domain-containing protein n=2 Tax=Ectocar... [more]
A0A835ZF16_9STRA2.470e-1642.42Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
F0W748_9STRA4.410e-1138.74Uncharacterized protein AlNc14C28G2677 n=1 Tax=Alb... [more]
A0A3R7JMF0_9STRA2.720e-1038.89RNase_PH_C domain-containing protein (Fragment) n=... [more]
Q54Q83_DICDI3.780e-1031.93Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]
A0A833WKX0_PHYIN1.170e-936.003' exoribonuclease family domain 2 n=1 Tax=Phytoph... [more]
A0A6G0WBP6_9STRA4.760e-937.61Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A0P1AC34_PLAHL5.210e-935.19Exosomal 3'-5' exoribonuclease complex, subunit Rr... [more]
A0A5D6XHQ5_9STRA8.290e-939.81Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3WUR4_GLOUD8.390e-939.82Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig162549contigH-elongata_contig162549:221..601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.1
Seed ortholog evalue1.3e-42
Seed eggNOG ortholog2880.D7FVT2
Preferred nameEXOSC5
KEGG koko:K12590,ko:K12812
KEGG Pathwayko03013,ko03015,ko03018,ko03040,ko05164,map03013,map03015,map03018,map03040,map05164
KEGG ModuleM00391,M00406,M00430
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000737,GO:0000785,GO:0000956,GO:0002252,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004536,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006304,GO:0006308,GO:0006309,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006915,GO:0006921,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0008219,GO:0008408,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0012501,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016078,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019219,GO:0019222,GO:0019439,GO:0019899,GO:0022411,GO:0022613,GO:0030262,GO:0031123,GO:0031125,GO:0031126,GO:0031323,GO:0031325,GO:0031329,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032075,GO:0032077,GO:0032991,GO:0034427,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0035327,GO:0042254,GO:0042802,GO:0043085,GO:0043144,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043487,GO:0043488,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045006,GO:0045935,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051252,GO:0051336,GO:0051345,GO:0051607,GO:0051704,GO:0051707,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071035,GO:0071038,GO:0071042,GO:0071046,GO:0071047,GO:0071051,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097194,GO:0098542,GO:0140097,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1903311,GO:1905354
EggNOG free text desc.polyadenylation-dependent snoRNA 3'-end processing
EggNOG OGsCOG0689@1,KOG1069@2759
EC3.6.4.13
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03041
Hectar predicted targeting categoryother localisation
Exons1
Model size381
Cds size381
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929951.0041797-CDS-H-elongata_contig162549:220..6011622929951.0041797-CDS-H-elongata_contig162549:220..601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162549 221..601 -
1691679220.4611359-CDS-H-elongata_contig162549:220..6011691679220.4611359-CDS-H-elongata_contig162549:220..601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162549 221..601 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig162549.3969.1prot_H-elongata_contig162549.3969.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig162549 221..601 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig162549.3969.1

>prot_H-elongata_contig162549.3969.1 ID=prot_H-elongata_contig162549.3969.1|Name=mRNA_H-elongata_contig162549.3969.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
QVIVDDGAVLSAALNASTLALLNAGVEMTGIALSLTCCITGISGSGIGRS
VILDPSKAEESEAIATAVVATLSASGGVLSCRAVGAMSKEEYFACCEAAA
QGTTAVRSFVRLSAEQKILREAETVR*
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mRNA from alignment at H-elongata_contig162549:221..601-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig162549.3969.1 ID=mRNA_H-elongata_contig162549.3969.1|Name=mRNA_H-elongata_contig162549.3969.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=381bp|location=Sequence derived from alignment at H-elongata_contig162549:221..601- (Himanthalia elongata Himel1 dioecious)
CAGGTCATTGTGGACGATGGCGCGGTGCTGAGCGCTGCCCTTAACGCCTC TACCTTGGCCCTACTCAACGCCGGCGTCGAGATGACAGGGATCGCGCTTT CACTGACATGCTGCATCACAGGGATTTCGGGGTCAGGCATCGGCCGATCT GTCATCCTGGATCCTTCTAAGGCAGAGGAGTCGGAAGCGATCGCAACCGC CGTCGTGGCAACCCTGTCGGCGAGCGGAGGGGTGCTCTCTTGCCGCGCAG TGGGGGCGATGAGTAAAGAGGAGTACTTTGCGTGTTGCGAGGCCGCGGCC CAGGGAACTACGGCGGTGCGTTCGTTTGTTCGATTGTCGGCGGAGCAAAA AATTCTTCGGGAGGCGGAAACGGTTCGATAA
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Coding sequence (CDS) from alignment at H-elongata_contig162549:221..601-

>mRNA_H-elongata_contig162549.3969.1 ID=mRNA_H-elongata_contig162549.3969.1|Name=mRNA_H-elongata_contig162549.3969.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig162549:221..601- (Himanthalia elongata Himel1 dioecious)
CAGGTCATTGTGGACGATGGCGCGGTGCTGAGCGCTGCCCTTAACGCCTC
TACCTTGGCCCTACTCAACGCCGGCGTCGAGATGACAGGGATCGCGCTTT
CACTGACATGCTGCATCACAGGGATTTCGGGGTCAGGCATCGGCCGATCT
GTCATCCTGGATCCTTCTAAGGCAGAGGAGTCGGAAGCGATCGCAACCGC
CGTCGTGGCAACCCTGTCGGCGAGCGGAGGGGTGCTCTCTTGCCGCGCAG
TGGGGGCGATGAGTAAAGAGGAGTACTTTGCGTGTTGCGAGGCCGCGGCC
CAGGGAACTACGGCGGTGCGTTCGTTTGTTCGATTGTCGGCGGAGCAAAA
AATTCTTCGGGAGGCGGAAACGGTTCGATAACAGGTCATTGTGGACGATG
GCGCGGTGCTGAGCGCTGCCCTTAACGCCTCTACCTTGGCCCTACTCAAC
GCCGGCGTCGAGATGACAGGGATCGCGCTTTCACTGACATGCTGCATCAC
AGGGATTTCGGGGTCAGGCATCGGCCGATCTGTCATCCTGGATCCTTCTA
AGGCAGAGGAGTCGGAAGCGATCGCAACCGCCGTCGTGGCAACCCTGTCG
GCGAGCGGAGGGGTGCTCTCTTGCCGCGCAGTGGGGGCGATGAGTAAAGA
GGAGTACTTTGCGTGTTGCGAGGCCGCGGCCCAGGGAACTACGGCGGTGC
GTTCGTTTGTTCGATTGTCGGCGGAGCAAAAAATTCTTCGGGAGGCGGAA
ACGGTTCGATAA
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