mRNA_H-elongata_contig161917.3943.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig161917.3943.1 vs. uniprot
Match: D7FUY2_ECTSI (NADH dehydrogenase (Ubiquinone) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUY2_ECTSI) HSP 1 Score: 154 bits (389), Expect = 1.430e-43 Identity = 77/102 (75.49%), Postives = 90/102 (88.24%), Query Frame = 1
Query: 1 FVLFLVMTGYPSSSDEESMRAAIGDADTVVNLIGKYYETKHLCFTRKPDGSINRINSSFENAHIEIPVMLARAAKAQGVKNFVHVSALAADLDSPSRWARTK 306
F L V+ + SSSDE+SMR AIG+ADTVVNLIGK+YETKHLCFTRK DG+INR+NSSF+N ++++ MLARAAKAQGVKNFVHVSALAAD DSPSRWA+TK
Sbjct: 83 FDLGQVVFPFYSSSDEQSMRDAIGNADTVVNLIGKHYETKHLCFTRKEDGAINRVNSSFKNVNVDVAGMLARAAKAQGVKNFVHVSALAADPDSPSRWAQTK 184
BLAST of mRNA_H-elongata_contig161917.3943.1 vs. uniprot
Match: A0A7S3HC55_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HC55_9STRA) HSP 1 Score: 102 bits (255), Expect = 6.450e-24 Identity = 46/91 (50.55%), Postives = 69/91 (75.82%), Query Frame = 1
Query: 34 SSSDEESMRAAIGDADTVVNLIGKYYETKHLCFTRKPDGSINRINSSFENAHIEIPVMLARAAKAQGVKNFVHVSALAADLDSPSRWARTK 306
S D ES+ A+ +D V+N+IGK+YETKH+ TR+ DG+++R+N FE ++ IP +LA +K GV++F+HVSAL+ADL+S S+W+RTK
Sbjct: 98 SPRDRESICEAVKKSDVVINMIGKHYETKHIVPTRRADGNLSRVNYDFEEVNVTIPRILAEISKEAGVESFIHVSALSADLESKSKWSRTK 188
BLAST of mRNA_H-elongata_contig161917.3943.1 vs. uniprot
Match: A0A836CC16_9STRA (NADH dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC16_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 1.250e-22 Identity = 48/91 (52.75%), Postives = 62/91 (68.13%), Query Frame = 1
Query: 34 SSSDEESMRAAIGDADTVVNLIGKYYETKHLCFTRKPDGSINRINSSFENAHIEIPVMLARAAKAQGVKNFVHVSALAADLDSPSRWARTK 306
S DE S+R AIG++D V+NL+GKYYETKH+ TR+ DG+ +RIN F H E P LA+ + GV+ +HVS +AAD S S WARTK
Sbjct: 84 SIRDETSVRQAIGESDIVINLVGKYYETKHIMKTRRADGTKSRINYGFAEIHEEWPAHLAKLSTEMGVRQLIHVSGMAADEHSDSSWARTK 174
BLAST of mRNA_H-elongata_contig161917.3943.1 vs. uniprot
Match: F0XY56_AURAN (RmlD_sub_bind domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XY56_AURAN) HSP 1 Score: 96.7 bits (239), Expect = 1.520e-21 Identity = 45/91 (49.45%), Postives = 64/91 (70.33%), Query Frame = 1
Query: 34 SSSDEESMRAAIGDADTVVNLIGKYYETKHLCFTRKPDGSINRINSSFENAHIEIPVMLARAAKAQGVKNFVHVSALAADLDSPSRWARTK 306
S+ DE S+ IG A+ VVN++GKYYET+++ T++ DG+ + +N S+E +++ +AR AKA G FVHVSA+AAD SPS WARTK
Sbjct: 115 SARDEASIAEVIGRANVVVNMVGKYYETRNVVPTKRADGAYSNVNYSYEEVNVDAARAIARQAKAAGAAGFVHVSAMAADAKSPSEWARTK 205
BLAST of mRNA_H-elongata_contig161917.3943.1 vs. uniprot
Match: A0A8J2SDM8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SDM8_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 2.540e-18 Identity = 41/91 (45.05%), Postives = 60/91 (65.93%), Query Frame = 1
Query: 34 SSSDEESMRAAIGDADTVVNLIGKYYETKHLCFTRKPDGSINRINSSFENAHIEIPVMLARAAKAQGVKNFVHVSALAADLDSPSRWARTK 306
S D S++ IG A VN++GKYYETK + T+KPDGS +R+N S+E ++++ +A+AA+ G ++F+HVS A DSP WAR K
Sbjct: 106 SPRDAASVQDVIGRATCTVNMVGKYYETKGVVPTKKPDGSKSRVNYSYEETNVDVARTIAKAAREAGCEHFIHVSCAAQSPDSPVAWARAK 196
BLAST of mRNA_H-elongata_contig161917.3943.1 vs. uniprot
Match: A0A7S1DZM3_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1DZM3_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 1.310e-17 Identity = 45/91 (49.45%), Postives = 58/91 (63.74%), Query Frame = 1
Query: 34 SSSDEESMRAAIGDADTVVNLIGKYYETKHLCFTRKPDGSINRINSSFENAHIEIPVMLARAAKAQGVKNFVHVSALAADLDSPSRWARTK 306
S D +SMR IGDAD V+N+IGKYYE+K T+ + N SFE+A++ IP +A + V NF+HVS+ AA DSPS WARTK
Sbjct: 25 SPRDVDSMRNVIGDADIVINMIGKYYESKAPYQTKSFPYVGYKTNYSFEDANVMIPRTIAELCREMQVDNFIHVSSAAASPDSPSEWARTK 115
BLAST of mRNA_H-elongata_contig161917.3943.1 vs. uniprot
Match: A0A812N9P1_9DINO (Ndufa9 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812N9P1_9DINO) HSP 1 Score: 79.0 bits (193), Expect = 1.740e-15 Identity = 46/91 (50.55%), Postives = 58/91 (63.74%), Query Frame = 1
Query: 34 SSSDEESMRAAIGDADTVVNLIGKYYETKHLCFTRKPDGSINRINSSFENAHIEIPVMLARAAKAQGVKNFVHVSALAADLDSPSRWARTK 306
S DE+S+R A ++D V+NLIGK YET L P G +N S+E AH+++ +AR A QGV VHVSALAAD S SRWAR+K
Sbjct: 21 SPRDEDSIRRATENSDIVINLIGKDYETSSL-----PWG----VNCSYEEAHVDVAGKVARIAVEQGVSTLVHVSALAADEHSLSRWARSK 102
BLAST of mRNA_H-elongata_contig161917.3943.1 vs. uniprot
Match: A0A2R5G349_9STRA (NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit 9, mitochondrial n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G349_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 1.090e-14 Identity = 44/97 (45.36%), Postives = 58/97 (59.79%), Query Frame = 1
Query: 16 VMTGYPSSSDEESMRAAIGDADTVVNLIGKYYETKHLCFTRKPDGSINRINSSFENAHIEIPVMLARAAKAQGVKNFVHVSALAADLDSPSRWARTK 306
++ Y + DEES+R I DTVVNL+GKYYETKH SI IN SF + H++ +AR A+ + K+ VHVS A+ DS S +ARTK
Sbjct: 110 LVASYIDTKDEESIRETIRGCDTVVNLMGKYYETKHFV------PSI--INCSFRDVHVDAAATVARIAREEDCKHLVHVSCAYANADSASEFARTK 198
BLAST of mRNA_H-elongata_contig161917.3943.1 vs. uniprot
Match: K0S9S2_THAOC (Epimerase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S9S2_THAOC) HSP 1 Score: 76.6 bits (187), Expect = 2.940e-14 Identity = 40/91 (43.96%), Postives = 55/91 (60.44%), Query Frame = 1
Query: 34 SSSDEESMRAAIGDADTVVNLIGKYYETKHLCFTRKPDGSINRINSSFENAHIEIPVMLARAAKAQGVKNFVHVSALAADLDSPSRWARTK 306
SS D +SM I DAD V+NLIGKYY+TK L T K ++++S A++E+P +A V N +HVS+ AA+ +S S WAR K
Sbjct: 107 SSRDTQSMADVIADADVVINLIGKYYDTKALEDTNKFPYLNYKVSTSIHEANVEVPAKIAELCTDMQVDNLIHVSSAAANPESSSEWARFK 197
BLAST of mRNA_H-elongata_contig161917.3943.1 vs. uniprot
Match: A0A7S3DQ43_9STRA (Hypothetical protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DQ43_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 7.740e-14 Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 1
Query: 43 DEESMRAAIGDADTVVNLIGKYYETKHLCFTRKPDGSINRINSSFENAHIEIPVMLARAAKAQGVKNFVHVSALAADLDSPSRWARTK 306
DE+S+R I DAD VVN+IGKYYE+ + T+ + N SFE +++IP LAR V +F+HVS+ +A+ DS S W+RTK
Sbjct: 117 DEDSIREVIADADIVVNMIGKYYESYYPYETKSFPYVGYKKNYSFEEVNVDIPEKLARICLDMQVDHFIHVSSASANPDSRSEWSRTK 204 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig161917.3943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig161917.3943.1 >prot_H-elongata_contig161917.3943.1 ID=prot_H-elongata_contig161917.3943.1|Name=mRNA_H-elongata_contig161917.3943.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp MTGYPSSSDEESMRAAIGDADTVVNLIGKYYETKHLCFTRKPDGSINRINback to top mRNA from alignment at H-elongata_contig161917:8..519- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig161917.3943.1 ID=mRNA_H-elongata_contig161917.3943.1|Name=mRNA_H-elongata_contig161917.3943.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=512bp|location=Sequence derived from alignment at H-elongata_contig161917:8..519- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig161917:8..519- >mRNA_H-elongata_contig161917.3943.1 ID=mRNA_H-elongata_contig161917.3943.1|Name=mRNA_H-elongata_contig161917.3943.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig161917:8..519- (Himanthalia elongata Himel1 dioecious)back to top |