mRNA_H-elongata_contig161917.3943.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig161917.3943.1
Unique NamemRNA_H-elongata_contig161917.3943.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig161917.3943.1 vs. uniprot
Match: D7FUY2_ECTSI (NADH dehydrogenase (Ubiquinone) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUY2_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 1.430e-43
Identity = 77/102 (75.49%), Postives = 90/102 (88.24%), Query Frame = 1
Query:    1 FVLFLVMTGYPSSSDEESMRAAIGDADTVVNLIGKYYETKHLCFTRKPDGSINRINSSFENAHIEIPVMLARAAKAQGVKNFVHVSALAADLDSPSRWARTK 306
            F L  V+  + SSSDE+SMR AIG+ADTVVNLIGK+YETKHLCFTRK DG+INR+NSSF+N ++++  MLARAAKAQGVKNFVHVSALAAD DSPSRWA+TK
Sbjct:   83 FDLGQVVFPFYSSSDEQSMRDAIGNADTVVNLIGKHYETKHLCFTRKEDGAINRVNSSFKNVNVDVAGMLARAAKAQGVKNFVHVSALAADPDSPSRWAQTK 184          
BLAST of mRNA_H-elongata_contig161917.3943.1 vs. uniprot
Match: A0A7S3HC55_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HC55_9STRA)

HSP 1 Score: 102 bits (255), Expect = 6.450e-24
Identity = 46/91 (50.55%), Postives = 69/91 (75.82%), Query Frame = 1
Query:   34 SSSDEESMRAAIGDADTVVNLIGKYYETKHLCFTRKPDGSINRINSSFENAHIEIPVMLARAAKAQGVKNFVHVSALAADLDSPSRWARTK 306
            S  D ES+  A+  +D V+N+IGK+YETKH+  TR+ DG+++R+N  FE  ++ IP +LA  +K  GV++F+HVSAL+ADL+S S+W+RTK
Sbjct:   98 SPRDRESICEAVKKSDVVINMIGKHYETKHIVPTRRADGNLSRVNYDFEEVNVTIPRILAEISKEAGVESFIHVSALSADLESKSKWSRTK 188          
BLAST of mRNA_H-elongata_contig161917.3943.1 vs. uniprot
Match: A0A836CC16_9STRA (NADH dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC16_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.250e-22
Identity = 48/91 (52.75%), Postives = 62/91 (68.13%), Query Frame = 1
Query:   34 SSSDEESMRAAIGDADTVVNLIGKYYETKHLCFTRKPDGSINRINSSFENAHIEIPVMLARAAKAQGVKNFVHVSALAADLDSPSRWARTK 306
            S  DE S+R AIG++D V+NL+GKYYETKH+  TR+ DG+ +RIN  F   H E P  LA+ +   GV+  +HVS +AAD  S S WARTK
Sbjct:   84 SIRDETSVRQAIGESDIVINLVGKYYETKHIMKTRRADGTKSRINYGFAEIHEEWPAHLAKLSTEMGVRQLIHVSGMAADEHSDSSWARTK 174          
BLAST of mRNA_H-elongata_contig161917.3943.1 vs. uniprot
Match: F0XY56_AURAN (RmlD_sub_bind domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XY56_AURAN)

HSP 1 Score: 96.7 bits (239), Expect = 1.520e-21
Identity = 45/91 (49.45%), Postives = 64/91 (70.33%), Query Frame = 1
Query:   34 SSSDEESMRAAIGDADTVVNLIGKYYETKHLCFTRKPDGSINRINSSFENAHIEIPVMLARAAKAQGVKNFVHVSALAADLDSPSRWARTK 306
            S+ DE S+   IG A+ VVN++GKYYET+++  T++ DG+ + +N S+E  +++    +AR AKA G   FVHVSA+AAD  SPS WARTK
Sbjct:  115 SARDEASIAEVIGRANVVVNMVGKYYETRNVVPTKRADGAYSNVNYSYEEVNVDAARAIARQAKAAGAAGFVHVSAMAADAKSPSEWARTK 205          
BLAST of mRNA_H-elongata_contig161917.3943.1 vs. uniprot
Match: A0A8J2SDM8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SDM8_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.540e-18
Identity = 41/91 (45.05%), Postives = 60/91 (65.93%), Query Frame = 1
Query:   34 SSSDEESMRAAIGDADTVVNLIGKYYETKHLCFTRKPDGSINRINSSFENAHIEIPVMLARAAKAQGVKNFVHVSALAADLDSPSRWARTK 306
            S  D  S++  IG A   VN++GKYYETK +  T+KPDGS +R+N S+E  ++++   +A+AA+  G ++F+HVS  A   DSP  WAR K
Sbjct:  106 SPRDAASVQDVIGRATCTVNMVGKYYETKGVVPTKKPDGSKSRVNYSYEETNVDVARTIAKAAREAGCEHFIHVSCAAQSPDSPVAWARAK 196          
BLAST of mRNA_H-elongata_contig161917.3943.1 vs. uniprot
Match: A0A7S1DZM3_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1DZM3_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.310e-17
Identity = 45/91 (49.45%), Postives = 58/91 (63.74%), Query Frame = 1
Query:   34 SSSDEESMRAAIGDADTVVNLIGKYYETKHLCFTRKPDGSINRINSSFENAHIEIPVMLARAAKAQGVKNFVHVSALAADLDSPSRWARTK 306
            S  D +SMR  IGDAD V+N+IGKYYE+K    T+       + N SFE+A++ IP  +A   +   V NF+HVS+ AA  DSPS WARTK
Sbjct:   25 SPRDVDSMRNVIGDADIVINMIGKYYESKAPYQTKSFPYVGYKTNYSFEDANVMIPRTIAELCREMQVDNFIHVSSAAASPDSPSEWARTK 115          
BLAST of mRNA_H-elongata_contig161917.3943.1 vs. uniprot
Match: A0A812N9P1_9DINO (Ndufa9 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812N9P1_9DINO)

HSP 1 Score: 79.0 bits (193), Expect = 1.740e-15
Identity = 46/91 (50.55%), Postives = 58/91 (63.74%), Query Frame = 1
Query:   34 SSSDEESMRAAIGDADTVVNLIGKYYETKHLCFTRKPDGSINRINSSFENAHIEIPVMLARAAKAQGVKNFVHVSALAADLDSPSRWARTK 306
            S  DE+S+R A  ++D V+NLIGK YET  L     P G    +N S+E AH+++   +AR A  QGV   VHVSALAAD  S SRWAR+K
Sbjct:   21 SPRDEDSIRRATENSDIVINLIGKDYETSSL-----PWG----VNCSYEEAHVDVAGKVARIAVEQGVSTLVHVSALAADEHSLSRWARSK 102          
BLAST of mRNA_H-elongata_contig161917.3943.1 vs. uniprot
Match: A0A2R5G349_9STRA (NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit 9, mitochondrial n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G349_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.090e-14
Identity = 44/97 (45.36%), Postives = 58/97 (59.79%), Query Frame = 1
Query:   16 VMTGYPSSSDEESMRAAIGDADTVVNLIGKYYETKHLCFTRKPDGSINRINSSFENAHIEIPVMLARAAKAQGVKNFVHVSALAADLDSPSRWARTK 306
            ++  Y  + DEES+R  I   DTVVNL+GKYYETKH         SI  IN SF + H++    +AR A+ +  K+ VHVS   A+ DS S +ARTK
Sbjct:  110 LVASYIDTKDEESIRETIRGCDTVVNLMGKYYETKHFV------PSI--INCSFRDVHVDAAATVARIAREEDCKHLVHVSCAYANADSASEFARTK 198          
BLAST of mRNA_H-elongata_contig161917.3943.1 vs. uniprot
Match: K0S9S2_THAOC (Epimerase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S9S2_THAOC)

HSP 1 Score: 76.6 bits (187), Expect = 2.940e-14
Identity = 40/91 (43.96%), Postives = 55/91 (60.44%), Query Frame = 1
Query:   34 SSSDEESMRAAIGDADTVVNLIGKYYETKHLCFTRKPDGSINRINSSFENAHIEIPVMLARAAKAQGVKNFVHVSALAADLDSPSRWARTK 306
            SS D +SM   I DAD V+NLIGKYY+TK L  T K      ++++S   A++E+P  +A       V N +HVS+ AA+ +S S WAR K
Sbjct:  107 SSRDTQSMADVIADADVVINLIGKYYDTKALEDTNKFPYLNYKVSTSIHEANVEVPAKIAELCTDMQVDNLIHVSSAAANPESSSEWARFK 197          
BLAST of mRNA_H-elongata_contig161917.3943.1 vs. uniprot
Match: A0A7S3DQ43_9STRA (Hypothetical protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DQ43_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 7.740e-14
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 1
Query:   43 DEESMRAAIGDADTVVNLIGKYYETKHLCFTRKPDGSINRINSSFENAHIEIPVMLARAAKAQGVKNFVHVSALAADLDSPSRWARTK 306
            DE+S+R  I DAD VVN+IGKYYE+ +   T+       + N SFE  +++IP  LAR      V +F+HVS+ +A+ DS S W+RTK
Sbjct:  117 DEDSIREVIADADIVVNMIGKYYESYYPYETKSFPYVGYKKNYSFEEVNVDIPEKLARICLDMQVDHFIHVSSASANPDSRSEWSRTK 204          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig161917.3943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUY2_ECTSI1.430e-4375.49NADH dehydrogenase (Ubiquinone) n=2 Tax=Ectocarpus... [more]
A0A7S3HC55_9STRA6.450e-2450.55Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A836CC16_9STRA1.250e-2252.75NADH dehydrogenase n=1 Tax=Tribonema minus TaxID=3... [more]
F0XY56_AURAN1.520e-2149.45RmlD_sub_bind domain-containing protein n=1 Tax=Au... [more]
A0A8J2SDM8_9STRA2.540e-1845.05Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1DZM3_9STRA1.310e-1749.45Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A812N9P1_9DINO1.740e-1550.55Ndufa9 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A2R5G349_9STRA1.090e-1445.36NADH dehydrogenase ubiquinone 1 alpha subcomplex s... [more]
K0S9S2_THAOC2.940e-1443.96Epimerase domain-containing protein n=1 Tax=Thalas... [more]
A0A7S3DQ43_9STRA7.740e-1445.45Hypothetical protein n=2 Tax=Amphiprora paludosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig161917contigH-elongata_contig161917:8..519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue8.4e-18
Seed eggNOG ortholog44056.XP_009033150.1
KEGG rclassRC00299
KEGG koko:K01593,ko:K03953
KEGG TC3.D.1.6
KEGG ReactionR00685,R00699,R00736,R02080,R02701,R04909
KEGG Pathwayko00190,ko00350,ko00360,ko00380,ko00901,ko00950,ko00965,ko01100,ko01110,ko04714,ko04723,ko04726,ko04728,ko04932,ko05010,ko05012,ko05016,ko05030,ko05031,ko05034,map00190,map00350,map00360,map00380,map00901,map00950,map00965,map01100,map01110,map04714,map04723,map04726,map04728,map04932,map05010,map05012,map05016,map05030,map05031,map05034
KEGG ModuleM00037,M00042,M00146
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009628,GO:0009651,GO:0009987,GO:0016020,GO:0016491,GO:0016651,GO:0019866,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0042180,GO:0042181,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0050896,GO:0051186,GO:0051188,GO:0055114,GO:0070469,GO:0071704,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901004,GO:1901006,GO:1901576,GO:1901661,GO:1901663,GO:1902494,GO:1990204
EggNOG free text desc.NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit 9
EggNOG OGsCOG0702@1,KOG2865@2759
EC4.1.1.105,4.1.1.28
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size306
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig161917.3943.1prot_H-elongata_contig161917.3943.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig161917 8..501 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929948.4854822-CDS-H-elongata_contig161917:7..1301622929948.4854822-CDS-H-elongata_contig161917:7..130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161917 8..130 -
1691679219.606771-CDS-H-elongata_contig161917:7..1301691679219.606771-CDS-H-elongata_contig161917:7..130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161917 8..130 -
1622929948.498316-CDS-H-elongata_contig161917:336..5011622929948.498316-CDS-H-elongata_contig161917:336..501Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161917 337..501 -
1691679219.620331-CDS-H-elongata_contig161917:336..5011691679219.620331-CDS-H-elongata_contig161917:336..501Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161917 337..501 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929948.5381477-UTR-H-elongata_contig161917:501..5191622929948.5381477-UTR-H-elongata_contig161917:501..519Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig161917 502..519 -
1691679219.6294944-UTR-H-elongata_contig161917:501..5191691679219.6294944-UTR-H-elongata_contig161917:501..519Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig161917 502..519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig161917.3943.1

>prot_H-elongata_contig161917.3943.1 ID=prot_H-elongata_contig161917.3943.1|Name=mRNA_H-elongata_contig161917.3943.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
MTGYPSSSDEESMRAAIGDADTVVNLIGKYYETKHLCFTRKPDGSINRIN
SSFENAHIEIPVMLARAAKAQGVKNFVHVSALAADLDSPSRWARTK
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mRNA from alignment at H-elongata_contig161917:8..519-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig161917.3943.1 ID=mRNA_H-elongata_contig161917.3943.1|Name=mRNA_H-elongata_contig161917.3943.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=512bp|location=Sequence derived from alignment at H-elongata_contig161917:8..519- (Himanthalia elongata Himel1 dioecious)
TTTGTTTTGTTTTTGGTGATGACTGGTTATCCTAGCTCGTCCGACGAGGA GAGCATGCGCGCTGCCATCGGCGACGCGGATACGGTCGTGAATCTTATTG GCAAGTACTACGAGACCAAGCACCTGTGCTTCACGAGGAAGCCGGACGGC TCCATCAACAGGATCAACAGCAGCTTCGAGAACGTGAGTCGCCTGCTTTA CATGTGTATATGCACCGGGAGGCGGCGTTTGAACGCCTGGGGATTTATTC CCTCCCTCACCCCTCCTCCTTAACGCCTCCTTCCCGCCTCTTGCAGAGGG AAGAAAGAGAGAGCAATGAAAGTTCGGTCCCGCACTGTTTTGCGTGGTTG CTTCTTTCTTTGGGTGCTGCTGATTGTGCTGCTGTACAGGCACATATTGA AATCCCCGTGATGCTGGCGCGGGCCGCGAAGGCACAGGGCGTCAAGAACT TCGTCCACGTCAGCGCCTTGGCAGCCGATCTAGATTCGCCCTCTCGGTGG GCGCGCACCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig161917:8..519-

>mRNA_H-elongata_contig161917.3943.1 ID=mRNA_H-elongata_contig161917.3943.1|Name=mRNA_H-elongata_contig161917.3943.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig161917:8..519- (Himanthalia elongata Himel1 dioecious)
ATGACTGGTTATCCTAGCTCGTCCGACGAGGAGAGCATGCGCGCTGCCAT
CGGCGACGCGGATACGGTCGTGAATCTTATTGGCAAGTACTACGAGACCA
AGCACCTGTGCTTCACGAGGAAGCCGGACGGCTCCATCAACAGGATCAAC
AGCAGCTTCGAGAACATGACTGGTTATCCTAGCTCGTCCGACGAGGAGAG
CATGCGCGCTGCCATCGGCGACGCGGATACGGTCGTGAATCTTATTGGCA
AGTACTACGAGACCAAGCACCTGTGCTTCACGAGGAAGCCGGACGGCTCC
ATCAACAGGATCAACAGCAGCTTCGAGAACGCACATATTGAAATCCCCGT
GATGCTGGCGCGGGCCGCGAAGGCACAGGGCGTCAAGAACTTCGTCCACG
TCAGCGCCTTGGCAGCCGATCTAGATTCGCCCTCTCGGTGGGCGCGCACC
AAGGCACATATTGAAATCCCCGTGATGCTGGCGCGGGCCGCGAAGGCACA
GGGCGTCAAGAACTTCGTCCACGTCAGCGCCTTGGCAGCCGATCTAGATT
CGCCCTCTCGGTGGGCGCGCACCAAG
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