mRNA_H-elongata_contig160960.3901.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig160960.3901.1 vs. uniprot
Match: A0A6H5LCC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCC1_9PHAE) HSP 1 Score: 128 bits (322), Expect = 2.030e-34 Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 1
Query: 1 GILADEMGLGKTLQSISILAYIHERMGVSGPHVILVPKSTLSNWLNELKRWCPVLRPLRFHGTKAS 198
GILADEMGLGKTLQSIS+LAY+HE GVSGPH+ILVPKSTLSNWLNELKRWCP LRPLRFHGT+AS
Sbjct: 286 GILADEMGLGKTLQSISVLAYMHEYKGVSGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTRAS 351
BLAST of mRNA_H-elongata_contig160960.3901.1 vs. uniprot
Match: D7FV68_ECTSI (Probable chromatin remodelling complex ATPase chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV68_ECTSI) HSP 1 Score: 127 bits (319), Expect = 1.490e-32 Identity = 57/70 (81.43%), Postives = 64/70 (91.43%), Query Frame = 1
Query: 1 GILADEMGLGKTLQSISILAYIHERMGVSGPHVILVPKSTLSNWLNELKRWCPVLRPLRFHGTKASRQNI 210
GILADEMGLGKTLQSIS+LAY+HE G+SGPH+ILVPKSTLSNWLNELKRWCP LRPLRFHGT+ R ++
Sbjct: 283 GILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTREERASL 352
BLAST of mRNA_H-elongata_contig160960.3901.1 vs. uniprot
Match: A0A7S2AX79_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2AX79_9CHLO) HSP 1 Score: 117 bits (292), Expect = 1.360e-30 Identity = 50/68 (73.53%), Postives = 61/68 (89.71%), Query Frame = 1
Query: 1 GILADEMGLGKTLQSISILAYIHERMGVSGPHVILVPKSTLSNWLNELKRWCPVLRPLRFHGTKASRQ 204
GILADEMGLGKTLQSIS+L Y+HE G++GPH+I+VPKSTLSNW+NE++RWCPVLRP++FHG RQ
Sbjct: 27 GILADEMGLGKTLQSISLLGYLHEYRGITGPHLIIVPKSTLSNWMNEVRRWCPVLRPIKFHGNGEERQ 94
BLAST of mRNA_H-elongata_contig160960.3901.1 vs. uniprot
Match: A0A830HXB8_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HXB8_9CHLO) HSP 1 Score: 117 bits (293), Expect = 4.810e-29 Identity = 50/68 (73.53%), Postives = 61/68 (89.71%), Query Frame = 1
Query: 1 GILADEMGLGKTLQSISILAYIHERMGVSGPHVILVPKSTLSNWLNELKRWCPVLRPLRFHGTKASRQ 204
GILADEMGLGKTLQSIS+L Y+HE G++GPH+I+VPKSTLSNW+NE++RWCPVLRP++FHG RQ
Sbjct: 229 GILADEMGLGKTLQSISLLGYLHEYRGITGPHLIIVPKSTLSNWMNEVRRWCPVLRPIKFHGNAEERQ 296
BLAST of mRNA_H-elongata_contig160960.3901.1 vs. uniprot
Match: A0A835YGX5_9STRA (Putative chromatin remodelling complex ATPase chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGX5_9STRA) HSP 1 Score: 115 bits (289), Expect = 1.670e-28 Identity = 51/67 (76.12%), Postives = 59/67 (88.06%), Query Frame = 1
Query: 1 GILADEMGLGKTLQSISILAYIHERMGVSGPHVILVPKSTLSNWLNELKRWCPVLRPLRFHGTKASR 201
GILADEMGLGKTLQSISILAY++E G+ GPH++LVPKSTLSNW+NE RWCPVLR +RFHGT+ R
Sbjct: 306 GILADEMGLGKTLQSISILAYMYEHKGIRGPHIVLVPKSTLSNWMNEFARWCPVLRAIRFHGTREER 372
BLAST of mRNA_H-elongata_contig160960.3901.1 vs. uniprot
Match: A0A1E7EMI7_9STRA (SNF2_N-domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EMI7_9STRA) HSP 1 Score: 110 bits (274), Expect = 2.410e-28 Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 1
Query: 1 GILADEMGLGKTLQSISILAYIHERMGVSGPHVILVPKSTLSNWLNELKRWCPVLRPLRFHGTKASRQ 204
GILADEMGLGKTLQSISILAY E + + GPH+I VPKSTLSNW+NELKRWCP LR +RFHG+K R+
Sbjct: 22 GILADEMGLGKTLQSISILAYHWEYLRIQGPHLICVPKSTLSNWMNELKRWCPSLRAIRFHGSKEDRE 89
BLAST of mRNA_H-elongata_contig160960.3901.1 vs. uniprot
Match: A0A7R9ZGQ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZGQ6_9STRA) HSP 1 Score: 114 bits (284), Expect = 7.720e-28 Identity = 52/70 (74.29%), Postives = 60/70 (85.71%), Query Frame = 1
Query: 1 GILADEMGLGKTLQSISILAYIHERMGVSGPHVILVPKSTLSNWLNELKRWCPVLRPLRFHGTKASRQNI 210
GILADEMGLGKTLQSISILAY +E +G+ GPH+I VPKSTLSNW+NEL RWCP LR +RFHG+K R+ I
Sbjct: 285 GILADEMGLGKTLQSISILAYNYEYLGIQGPHLICVPKSTLSNWMNELNRWCPSLRAIRFHGSKEDREAI 354
BLAST of mRNA_H-elongata_contig160960.3901.1 vs. uniprot
Match: A0A7S2HGM0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HGM0_9STRA) HSP 1 Score: 112 bits (281), Expect = 1.620e-27 Identity = 53/67 (79.10%), Postives = 56/67 (83.58%), Query Frame = 1
Query: 1 GILADEMGLGKTLQSISILAYIHERMGVSGPHVILVPKSTLSNWLNELKRWCPVLRPLRFHGTKASR 201
GILADEMGLGKTLQSISIL Y E V GPH+ILVPKSTLSNW+NE KRWCP+L PLRFHGTK R
Sbjct: 227 GILADEMGLGKTLQSISILGYTAEYTDVRGPHLILVPKSTLSNWMNEFKRWCPMLNPLRFHGTKEER 293
BLAST of mRNA_H-elongata_contig160960.3901.1 vs. uniprot
Match: A0A7S4NH32_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NH32_9STRA) HSP 1 Score: 112 bits (281), Expect = 2.010e-27 Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 1
Query: 1 GILADEMGLGKTLQSISILAYIHERMGVSGPHVILVPKSTLSNWLNELKRWCPVLRPLRFHGTKASRQNI 210
GILADEMGLGKTLQSISILAY +E +G+ GPH++ VPKSTLSNW+NEL RWCP LR +RFHG K R+ I
Sbjct: 289 GILADEMGLGKTLQSISILAYNYEYLGIQGPHLVCVPKSTLSNWMNELNRWCPSLRAIRFHGNKDDREAI 358
BLAST of mRNA_H-elongata_contig160960.3901.1 vs. uniprot
Match: A0A7S3UXF4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXF4_HETAK) HSP 1 Score: 105 bits (262), Expect = 2.420e-27 Identity = 46/70 (65.71%), Postives = 56/70 (80.00%), Query Frame = 1
Query: 1 GILADEMGLGKTLQSISILAYIHERMGVSGPHVILVPKSTLSNWLNELKRWCPVLRPLRFHGTKASRQNI 210
GILADEMGLGKTLQSISIL Y E + GPH++LVPKSTLSNW+NE +RWCP +R ++FHG K R+ +
Sbjct: 46 GILADEMGLGKTLQSISILGYTMEYRSIRGPHIVLVPKSTLSNWMNEFQRWCPDIRAIKFHGNKDERKEL 115 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig160960.3901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig160960.3901.1 >prot_H-elongata_contig160960.3901.1 ID=prot_H-elongata_contig160960.3901.1|Name=mRNA_H-elongata_contig160960.3901.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp MGLGKTLQSISILAYIHERMGVSGPHVILVPKSTLSNWLNELKRWCPVLRback to top mRNA from alignment at H-elongata_contig160960:927..1136+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig160960.3901.1 ID=mRNA_H-elongata_contig160960.3901.1|Name=mRNA_H-elongata_contig160960.3901.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=210bp|location=Sequence derived from alignment at H-elongata_contig160960:927..1136+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig160960:927..1136+ >mRNA_H-elongata_contig160960.3901.1 ID=mRNA_H-elongata_contig160960.3901.1|Name=mRNA_H-elongata_contig160960.3901.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig160960:927..1136+ (Himanthalia elongata Himel1 dioecious)back to top |