mRNA_H-elongata_contig160960.3901.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig160960.3901.1
Unique NamemRNA_H-elongata_contig160960.3901.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig160960.3901.1 vs. uniprot
Match: A0A6H5LCC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCC1_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 2.030e-34
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 1
Query:    1 GILADEMGLGKTLQSISILAYIHERMGVSGPHVILVPKSTLSNWLNELKRWCPVLRPLRFHGTKAS 198
            GILADEMGLGKTLQSIS+LAY+HE  GVSGPH+ILVPKSTLSNWLNELKRWCP LRPLRFHGT+AS
Sbjct:  286 GILADEMGLGKTLQSISVLAYMHEYKGVSGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTRAS 351          
BLAST of mRNA_H-elongata_contig160960.3901.1 vs. uniprot
Match: D7FV68_ECTSI (Probable chromatin remodelling complex ATPase chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV68_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 1.490e-32
Identity = 57/70 (81.43%), Postives = 64/70 (91.43%), Query Frame = 1
Query:    1 GILADEMGLGKTLQSISILAYIHERMGVSGPHVILVPKSTLSNWLNELKRWCPVLRPLRFHGTKASRQNI 210
            GILADEMGLGKTLQSIS+LAY+HE  G+SGPH+ILVPKSTLSNWLNELKRWCP LRPLRFHGT+  R ++
Sbjct:  283 GILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTREERASL 352          
BLAST of mRNA_H-elongata_contig160960.3901.1 vs. uniprot
Match: A0A7S2AX79_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2AX79_9CHLO)

HSP 1 Score: 117 bits (292), Expect = 1.360e-30
Identity = 50/68 (73.53%), Postives = 61/68 (89.71%), Query Frame = 1
Query:    1 GILADEMGLGKTLQSISILAYIHERMGVSGPHVILVPKSTLSNWLNELKRWCPVLRPLRFHGTKASRQ 204
            GILADEMGLGKTLQSIS+L Y+HE  G++GPH+I+VPKSTLSNW+NE++RWCPVLRP++FHG    RQ
Sbjct:   27 GILADEMGLGKTLQSISLLGYLHEYRGITGPHLIIVPKSTLSNWMNEVRRWCPVLRPIKFHGNGEERQ 94          
BLAST of mRNA_H-elongata_contig160960.3901.1 vs. uniprot
Match: A0A830HXB8_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HXB8_9CHLO)

HSP 1 Score: 117 bits (293), Expect = 4.810e-29
Identity = 50/68 (73.53%), Postives = 61/68 (89.71%), Query Frame = 1
Query:    1 GILADEMGLGKTLQSISILAYIHERMGVSGPHVILVPKSTLSNWLNELKRWCPVLRPLRFHGTKASRQ 204
            GILADEMGLGKTLQSIS+L Y+HE  G++GPH+I+VPKSTLSNW+NE++RWCPVLRP++FHG    RQ
Sbjct:  229 GILADEMGLGKTLQSISLLGYLHEYRGITGPHLIIVPKSTLSNWMNEVRRWCPVLRPIKFHGNAEERQ 296          
BLAST of mRNA_H-elongata_contig160960.3901.1 vs. uniprot
Match: A0A835YGX5_9STRA (Putative chromatin remodelling complex ATPase chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGX5_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.670e-28
Identity = 51/67 (76.12%), Postives = 59/67 (88.06%), Query Frame = 1
Query:    1 GILADEMGLGKTLQSISILAYIHERMGVSGPHVILVPKSTLSNWLNELKRWCPVLRPLRFHGTKASR 201
            GILADEMGLGKTLQSISILAY++E  G+ GPH++LVPKSTLSNW+NE  RWCPVLR +RFHGT+  R
Sbjct:  306 GILADEMGLGKTLQSISILAYMYEHKGIRGPHIVLVPKSTLSNWMNEFARWCPVLRAIRFHGTREER 372          
BLAST of mRNA_H-elongata_contig160960.3901.1 vs. uniprot
Match: A0A1E7EMI7_9STRA (SNF2_N-domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EMI7_9STRA)

HSP 1 Score: 110 bits (274), Expect = 2.410e-28
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 1
Query:    1 GILADEMGLGKTLQSISILAYIHERMGVSGPHVILVPKSTLSNWLNELKRWCPVLRPLRFHGTKASRQ 204
            GILADEMGLGKTLQSISILAY  E + + GPH+I VPKSTLSNW+NELKRWCP LR +RFHG+K  R+
Sbjct:   22 GILADEMGLGKTLQSISILAYHWEYLRIQGPHLICVPKSTLSNWMNELKRWCPSLRAIRFHGSKEDRE 89          
BLAST of mRNA_H-elongata_contig160960.3901.1 vs. uniprot
Match: A0A7R9ZGQ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZGQ6_9STRA)

HSP 1 Score: 114 bits (284), Expect = 7.720e-28
Identity = 52/70 (74.29%), Postives = 60/70 (85.71%), Query Frame = 1
Query:    1 GILADEMGLGKTLQSISILAYIHERMGVSGPHVILVPKSTLSNWLNELKRWCPVLRPLRFHGTKASRQNI 210
            GILADEMGLGKTLQSISILAY +E +G+ GPH+I VPKSTLSNW+NEL RWCP LR +RFHG+K  R+ I
Sbjct:  285 GILADEMGLGKTLQSISILAYNYEYLGIQGPHLICVPKSTLSNWMNELNRWCPSLRAIRFHGSKEDREAI 354          
BLAST of mRNA_H-elongata_contig160960.3901.1 vs. uniprot
Match: A0A7S2HGM0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HGM0_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.620e-27
Identity = 53/67 (79.10%), Postives = 56/67 (83.58%), Query Frame = 1
Query:    1 GILADEMGLGKTLQSISILAYIHERMGVSGPHVILVPKSTLSNWLNELKRWCPVLRPLRFHGTKASR 201
            GILADEMGLGKTLQSISIL Y  E   V GPH+ILVPKSTLSNW+NE KRWCP+L PLRFHGTK  R
Sbjct:  227 GILADEMGLGKTLQSISILGYTAEYTDVRGPHLILVPKSTLSNWMNEFKRWCPMLNPLRFHGTKEER 293          
BLAST of mRNA_H-elongata_contig160960.3901.1 vs. uniprot
Match: A0A7S4NH32_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NH32_9STRA)

HSP 1 Score: 112 bits (281), Expect = 2.010e-27
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 1
Query:    1 GILADEMGLGKTLQSISILAYIHERMGVSGPHVILVPKSTLSNWLNELKRWCPVLRPLRFHGTKASRQNI 210
            GILADEMGLGKTLQSISILAY +E +G+ GPH++ VPKSTLSNW+NEL RWCP LR +RFHG K  R+ I
Sbjct:  289 GILADEMGLGKTLQSISILAYNYEYLGIQGPHLVCVPKSTLSNWMNELNRWCPSLRAIRFHGNKDDREAI 358          
BLAST of mRNA_H-elongata_contig160960.3901.1 vs. uniprot
Match: A0A7S3UXF4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXF4_HETAK)

HSP 1 Score: 105 bits (262), Expect = 2.420e-27
Identity = 46/70 (65.71%), Postives = 56/70 (80.00%), Query Frame = 1
Query:    1 GILADEMGLGKTLQSISILAYIHERMGVSGPHVILVPKSTLSNWLNELKRWCPVLRPLRFHGTKASRQNI 210
            GILADEMGLGKTLQSISIL Y  E   + GPH++LVPKSTLSNW+NE +RWCP +R ++FHG K  R+ +
Sbjct:   46 GILADEMGLGKTLQSISILGYTMEYRSIRGPHIVLVPKSTLSNWMNEFQRWCPDIRAIKFHGNKDERKEL 115          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig160960.3901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LCC1_9PHAE2.030e-3489.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV68_ECTSI1.490e-3281.43Probable chromatin remodelling complex ATPase chai... [more]
A0A7S2AX79_9CHLO1.360e-3073.53Hypothetical protein (Fragment) n=1 Tax=Pycnococcu... [more]
A0A830HXB8_9CHLO4.810e-2973.53Uncharacterized protein n=1 Tax=Pycnococcus provas... [more]
A0A835YGX5_9STRA1.670e-2876.12Putative chromatin remodelling complex ATPase chai... [more]
A0A1E7EMI7_9STRA2.410e-2875.00SNF2_N-domain-containing protein (Fragment) n=1 Ta... [more]
A0A7R9ZGQ6_9STRA7.720e-2874.29Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2HGM0_9STRA1.620e-2779.10Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S4NH32_9STRA2.010e-2772.86Hypothetical protein (Fragment) n=2 Tax=Odontella ... [more]
A0A7S3UXF4_HETAK2.420e-2765.71Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig160960contigH-elongata_contig160960:927..1136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.4
Seed ortholog evalue6.1e-25
Seed eggNOG ortholog2880.D7FV68
KEGG koko:K11654
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG0385@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size192
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929944.2745667-UTR-H-elongata_contig160960:926..9441622929944.2745667-UTR-H-elongata_contig160960:926..944Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig160960 927..944 +
1691679217.8935888-UTR-H-elongata_contig160960:926..9441691679217.8935888-UTR-H-elongata_contig160960:926..944Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig160960 927..944 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929944.3146908-CDS-H-elongata_contig160960:944..11361622929944.3146908-CDS-H-elongata_contig160960:944..1136Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160960 945..1136 +
1691679217.910505-CDS-H-elongata_contig160960:944..11361691679217.910505-CDS-H-elongata_contig160960:944..1136Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160960 945..1136 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig160960.3901.1prot_H-elongata_contig160960.3901.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig160960 945..1136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig160960.3901.1

>prot_H-elongata_contig160960.3901.1 ID=prot_H-elongata_contig160960.3901.1|Name=mRNA_H-elongata_contig160960.3901.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MGLGKTLQSISILAYIHERMGVSGPHVILVPKSTLSNWLNELKRWCPVLR
PLRFHGTKASRQNI
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mRNA from alignment at H-elongata_contig160960:927..1136+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig160960.3901.1 ID=mRNA_H-elongata_contig160960.3901.1|Name=mRNA_H-elongata_contig160960.3901.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=210bp|location=Sequence derived from alignment at H-elongata_contig160960:927..1136+ (Himanthalia elongata Himel1 dioecious)
GGTATTCTGGCGGACGAAATGGGTCTGGGTAAGACGCTGCAAAGCATCAG CATCCTGGCGTACATTCACGAGCGCATGGGAGTGAGTGGGCCGCACGTGA TCCTCGTGCCCAAGAGCACCCTCTCGAACTGGCTCAACGAGCTCAAGCGT TGGTGCCCCGTGCTGCGACCGCTTCGCTTCCACGGGACAAAGGCAAGTAG ACAAAACATA
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Coding sequence (CDS) from alignment at H-elongata_contig160960:927..1136+

>mRNA_H-elongata_contig160960.3901.1 ID=mRNA_H-elongata_contig160960.3901.1|Name=mRNA_H-elongata_contig160960.3901.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig160960:927..1136+ (Himanthalia elongata Himel1 dioecious)
ATGGGTCTGGGTAAGACGCTGCAAAGCATCAGCATCCTGGCGTACATTCA
CGAGCGCATGGGAGTGAGTGGGCCGCACGTGATCCTCGTGCCCAAGAGCA
CCCTCTCGAACTGGCTCAACGAGCTCAAGCGTTGGTGCCCCGTGCTGCGA
CCGCTTCGCTTCCACGGGACAAAGGCAAGTAGACAAAACATAATGGGTCT
GGGTAAGACGCTGCAAAGCATCAGCATCCTGGCGTACATTCACGAGCGCA
TGGGAGTGAGTGGGCCGCACGTGATCCTCGTGCCCAAGAGCACCCTCTCG
AACTGGCTCAACGAGCTCAAGCGTTGGTGCCCCGTGCTGCGACCGCTTCG
CTTCCACGGGACAAAGGCAAGTAGACAAAACATA
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