mRNA_H-elongata_contig16024.3868.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16024.3868.1
Unique NamemRNA_H-elongata_contig16024.3868.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16024.3868.1 vs. uniprot
Match: D8LJW2_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJW2_ECTSI)

HSP 1 Score: 246 bits (628), Expect = 4.150e-80
Identity = 123/193 (63.73%), Postives = 148/193 (76.68%), Query Frame = 1 
Query:    1 VEVVACPASCPTPPGVPIRTFYDASAKKSAARGVAVSPCEGDVEQRGMSCTSLGGLPAYATSVLPIRFTNEQVQLNEACLFRLNIDADWVETEVIAIECRLMNRPLLEGDDAPAPTEGGDTGSRDMPHEEE--LKEVGKLALHVKCAAARGGLHRYHPLVFPQPHLCQLDFTLHMALTAMNHSGGPAGLSAAI 573
            VE V  P S P  PGVP+RTF+D SA++S ARGV V+P EGDV+QRG S  S  GLP+Y +S+LPIRFTNE+VQLNE CLFR++IDADWVET+VIAIE RL+  PL E D AP        G+   P ++   LKEVGK+ LH KCA+++GGLHRYHPLVF QPHLC +D TLHMALT++NH GGPAGL+AAI
Sbjct:   16 VEAVVFPVSNPYAPGVPVRTFHDPSARRSTARGVLVNPAEGDVDQRGSSGISAAGLPSYTSSLLPIRFTNEEVQLNEGCLFRVHIDADWVETDVIAIEFRLLTTPLPENDAAPTEDVIAAAGATVTPEKKPITLKEVGKVTLHTKCASSKGGLHRYHPLVFKQPHLCVVDITLHMALTSVNHPGGPAGLAAAI 208
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BLAST of mRNA_H-elongata_contig16024.3868.1 vs. uniprot
Match: A0A7R9YF49_9STRA (Hypothetical protein n=4 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YF49_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.630e-6
Identity = 34/119 (28.57%), Postives = 62/119 (52.10%), Query Frame = 1 
Query:  172 AYATSVLPIRFTNEQVQLNEACLFRLNIDADWVETEVIAIECRLMNRPLLEGDDAPAPTEGGDTGSRDMPHEEELKEVGKLALHVKCAAARGGLHRYHPLVFPQPHLCQLDFTLHMALT 528
            +Y T V+PIR+ +E V+LNE   F+L   AD  +T+   +   L   P ++G ++ +  +        +P + + + V    L ++  A   GLH ++P+ F   HLC+++ T H  +T
Sbjct:   81 SYVTRVIPIRYRDETVELNEGAHFQLTFPADQADTDA-ELHVALFFCPFVKGVESRSLADL-------IPPQPQFECVATQRLLIRQVAR--GLHAFYPVTFDDMHLCEVEMTFHTLVT 189
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16024.3868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJW2_ECTSI4.150e-8063.73Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7R9YF49_9STRA1.630e-628.57Hypothetical protein n=4 Tax=Pinguiococcus pyrenoi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16024contigH-elongata_contig16024:3072..4889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_009890.1
Exons4
Model size582
Cds size582
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16024.3868.1prot_H-elongata_contig16024.3868.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16024 3072..4889 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929940.8861165-CDS-H-elongata_contig16024:3071..31341622929940.8861165-CDS-H-elongata_contig16024:3071..3134Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16024 3072..3134 -
1691679216.4856296-CDS-H-elongata_contig16024:3071..31341691679216.4856296-CDS-H-elongata_contig16024:3071..3134Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16024 3072..3134 -
1622929940.918896-CDS-H-elongata_contig16024:3649..37661622929940.918896-CDS-H-elongata_contig16024:3649..3766Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16024 3650..3766 -
1691679216.4958441-CDS-H-elongata_contig16024:3649..37661691679216.4958441-CDS-H-elongata_contig16024:3649..3766Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16024 3650..3766 -
1622929940.9332578-CDS-H-elongata_contig16024:4017..42091622929940.9332578-CDS-H-elongata_contig16024:4017..4209Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16024 4018..4209 -
1691679216.5061288-CDS-H-elongata_contig16024:4017..42091691679216.5061288-CDS-H-elongata_contig16024:4017..4209Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16024 4018..4209 -
1622929940.959225-CDS-H-elongata_contig16024:4679..48891622929940.959225-CDS-H-elongata_contig16024:4679..4889Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16024 4680..4889 -
1691679216.5142798-CDS-H-elongata_contig16024:4679..48891691679216.5142798-CDS-H-elongata_contig16024:4679..4889Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16024 4680..4889 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16024.3868.1

>prot_H-elongata_contig16024.3868.1 ID=prot_H-elongata_contig16024.3868.1|Name=mRNA_H-elongata_contig16024.3868.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=194bp
VEVVACPASCPTPPGVPIRTFYDASAKKSAARGVAVSPCEGDVEQRGMSC
TSLGGLPAYATSVLPIRFTNEQVQLNEACLFRLNIDADWVETEVIAIECR
LMNRPLLEGDDAPAPTEGGDTGSRDMPHEEELKEVGKLALHVKCAAARGG
LHRYHPLVFPQPHLCQLDFTLHMALTAMNHSGGPAGLSAAISAT
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mRNA from alignment at H-elongata_contig16024:3072..4889-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16024.3868.1 ID=mRNA_H-elongata_contig16024.3868.1|Name=mRNA_H-elongata_contig16024.3868.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1818bp|location=Sequence derived from alignment at H-elongata_contig16024:3072..4889- (Himanthalia elongata Himel1 dioecious)
GTTGAGGTCGTGGCGTGCCCCGCGTCGTGTCCGACCCCTCCGGGAGTTCC
AATTCGCACGTTTTACGACGCTTCGGCGAAGAAGTCTGCGGCTCGAGGCG
TTGCAGTTAGCCCTTGTGAGGGAGACGTGGAACAGCGCGGCATGTCGTGC
ACCAGTCTGGGCGGCCTCCCGGCGTACGCCACCAGCGTCTTGCCCATCCG
ATTTACCAACGTAAGTACCCTTCGGGTATTAAGTTGCGGAATATGCAGAG
AGAGAGAGAAAAAACGCGGTGTATTTATTTTGAAAGGAAAACCGCATGGT
CGGTTGTTGGCGTTACAATGGTGACGGTGGAAAAATCCGAAACGGTATTT
TTTATCATTCTGATAAAAGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTTTTTGCACAAGGGTGGTAATCCTCTTGTTGAGAGTGTCCACA
TGCACCATGCACTCCCAGCGGCAGCATTAGTAGTAGTAGTAAAATTAGCT
CAGCGGAAAAACTGATAGACGGATGACATGACATCGTACGCTGCATGATC
CTCGCTGGTGTTCTTCTCCCCCCCCATCCCCCTCCCCCTAATCCCCCCCT
GGCGTACCCTCTCATAGCCTCTCATGGCTCGTCAACATCTTTAACGCTAA
TCACCGTATCTTGGGGCACTCGCGACTCAGGAGCAAGTACAGCTTAACGA
AGCCTGCCTGTTCCGCCTGAACATCGATGCCGATTGGGTGGAAACCGAAG
TGATCGCGATCGAGTGCCGTCTCATGAACCGCCCCCTCTTGGAAGGTGAC
GACGCGCCCGCGCCGACCGAGGGTGGTGACACCGGCTCTCGGGATATGCC
GCATGAAGAAGAGCTCAAGGAGGTCAGTGGGATGTTTGTGTGTGCTTTTT
GTGGATTTTCGGTGGATGCGATGTAAGATATAAGAGAAGAACAAAGTGCC
GAAAGTACTTGCTTGACACGGTCAAGGATTTCACCCCGACTGAAAATATT
GTAATTGGGGTTGTTCCCAAGAGGCACTTCGAAGCACACTACGATGCGTA
CGCTCTGTATTGCTTAGATGACCACAGCAGTGGTGGCTCTCATGCGCATT
GTCGAATGTATTTTCTTGTGCAGGTAGGGAAGCTGGCGCTTCACGTGAAG
TGCGCGGCAGCGCGGGGGGGGCTGCACCGCTACCATCCCCTTGTTTTCCC
CCAGCCACATCTATGCCAGCTGGACTTCACCTTGCACATGGTGAGCTCGA
CGAATTGGTTGGCGGGTCACCTGTGCAGCTATAATAATTCATTATCTTAA
AAAAAAAAAAAAAGGAAATCGCACAGACCTGTTGTGTGCGGCAAAGCTTG
TTTTAATGCCGCAATTTCTCAGCGAGGTTCTTCTACCCTAGACGATCTTC
TCTCGGCCCCATTAAAATAATATAAACAAGAAGCAATATCTTGCAACAGA
CGATAGTTATCAAGTATAACGCAGAAAAATGCACATCCATAATTGGCGGC
CCACGGCCCACGGCGCTGAAAAACATGCAGCCGCGGTTGCGGTTCCTCTG
TTGGGAAATCTTTCATATTGATTGTTTTTAGTGTCGTCGGCGGGCGCATG
TGCGGGCGCGTTGAAAGAATCGCACATAAACTATGAATACATGAATCGCA
CTACCTCCTATTCATCCTCTTCCTCGTTTCAATTTTTTCTCAATTCGTGA
TTAACTTTCCCGAAATGTTATGTTCCGTCGCACGACGTACGACCACCATC
TGCAGGCGCTGACGGCGATGAACCACTCGGGGGGGCCCGCCGGGCTGTCG
GCGGCTATATCTGCCACG
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Coding sequence (CDS) from alignment at H-elongata_contig16024:3072..4889-

>mRNA_H-elongata_contig16024.3868.1 ID=mRNA_H-elongata_contig16024.3868.1|Name=mRNA_H-elongata_contig16024.3868.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1164bp|location=Sequence derived from alignment at H-elongata_contig16024:3072..4889- (Himanthalia elongata Himel1 dioecious)
GTTGAGGTCGTGGCGTGCCCCGCGTCGTGTCCGACCCCTCCGGGAGTTCC
AATTCGCACGTTTTACGACGCTTCGGCGAAGAAGTCTGCGGCTCGAGGCG
TTGCAGTTAGCCCTTGTGAGGGAGACGTGGAACAGCGCGGCATGTCGTGC
ACCAGTCTGGGCGGCCTCCCGGCGTACGCCACCAGCGTCTTGCCCATCCG
ATTTACCAACGTTGAGGTCGTGGCGTGCCCCGCGTCGTGTCCGACCCCTC
CGGGAGTTCCAATTCGCACGTTTTACGACGCTTCGGCGAAGAAGTCTGCG
GCTCGAGGCGTTGCAGTTAGCCCTTGTGAGGGAGACGTGGAACAGCGCGG
CATGTCGTGCACCAGTCTGGGCGGCCTCCCGGCGTACGCCACCAGCGTCT
TGCCCATCCGATTTACCAACGAGCAAGTACAGCTTAACGAAGCCTGCCTG
TTCCGCCTGAACATCGATGCCGATTGGGTGGAAACCGAAGTGATCGCGAT
CGAGTGCCGTCTCATGAACCGCCCCCTCTTGGAAGGTGACGACGCGCCCG
CGCCGACCGAGGGTGGTGACACCGGCTCTCGGGATATGCCGCATGAAGAA
GAGCTCAAGGAGGAGCAAGTACAGCTTAACGAAGCCTGCCTGTTCCGCCT
GAACATCGATGCCGATTGGGTGGAAACCGAAGTGATCGCGATCGAGTGCC
GTCTCATGAACCGCCCCCTCTTGGAAGGTGACGACGCGCCCGCGCCGACC
GAGGGTGGTGACACCGGCTCTCGGGATATGCCGCATGAAGAAGAGCTCAA
GGAGGTAGGGAAGCTGGCGCTTCACGTGAAGTGCGCGGCAGCGCGGGGGG
GGCTGCACCGCTACCATCCCCTTGTTTTCCCCCAGCCACATCTATGCCAG
CTGGACTTCACCTTGCACATGGTAGGGAAGCTGGCGCTTCACGTGAAGTG
CGCGGCAGCGCGGGGGGGGCTGCACCGCTACCATCCCCTTGTTTTCCCCC
AGCCACATCTATGCCAGCTGGACTTCACCTTGCACATGGCGCTGACGGCG
ATGAACCACTCGGGGGGGCCCGCCGGGCTGTCGGCGGCTATATCTGCCAC
GGCGCTGACGGCGATGAACCACTCGGGGGGGCCCGCCGGGCTGTCGGCGG
CTATATCTGCCACG
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