mRNA_H-elongata_contig16001.3859.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16001.3859.1
Unique NamemRNA_H-elongata_contig16001.3859.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig16001.3859.1 vs. uniprot
Match: D8LI90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI90_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 7.190e-23
Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 1
Query:    1 GLVPVSSSLEKWMIASSIFAGIYATLYFGWIMQHRQTVIVKLSQPFVCQLFLSGCVLLNVVV-FHLGEPSDVVCAARPWVLHVGLTFT 261
            G +P+ S L   ++  + FAG+YA +   WI + R  VIVKLSQPFVCQLFL+GC+LLN+   F +G  SD  C  +PW+LH+GLTFT
Sbjct:  336 GYIPLKSDLGTTIVVCAAFAGLYAAVILWWIRRERWAVIVKLSQPFVCQLFLAGCILLNITAAFLVGVASDPSCVMQPWMLHIGLTFT 423          
BLAST of mRNA_H-elongata_contig16001.3859.1 vs. uniprot
Match: A0A7S2XWQ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWQ9_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 3.140e-15
Identity = 38/100 (38.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:    7 VPVSSSLEKWMIASSIFAGIYATLYFGWIMQHRQTVIVKLSQPFVCQLFLSGCVLLNVVVFHL-GEPSDVVCAARPWVLHVGLTFTCSCLYLKTYRVQRV 303
            +P  S++   M A S    +    +  WI +HR   +VK+SQP  C LF  G ++ N+ +  L G+PSD +C  RPW+ H+ +TFT SCL +K + V R+
Sbjct:  112 LPRESTVGWTMTAFSTIGTVICLFWLVWIYEHRAFSVVKMSQPLFCGLFALGGLVCNLSLLALLGKPSDALCRIRPWLQHLPITFTYSCLLVKIFHVWRI 211          
BLAST of mRNA_H-elongata_contig16001.3859.1 vs. uniprot
Match: A0A0D2WRC7_CAPO3 (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WRC7_CAPO3)

HSP 1 Score: 69.7 bits (169), Expect = 1.850e-11
Identity = 39/102 (38.24%), Postives = 59/102 (57.84%), Query Frame = 1
Query:   52 IFAGIYATLYFGWI---MQHRQTVIVKLSQPFVCQLFLSGCVLLNVVVFHLGE-PSDVVCAARPWVLHVGLTFTCSCLYLKTYRVQRVFNSVAKLSRISIKD 345
            + A I+  + FG++   M++  + I+  S P    L L G +L  V +F     P+D +CAA PWV H+G  F    L+LKTYR+ R+FN+ A + RI +KD
Sbjct: 1234 VLAAIFILIAFGFLLFLMRNWSSRIIVASSPTFLALILFGALLSYVWIFLAAPTPTDALCAAMPWVRHLGFCFVFGALFLKTYRIDRIFNNDA-IKRIRMKD 1334          
BLAST of mRNA_H-elongata_contig16001.3859.1 vs. uniprot
Match: A0A835YYF4_9STRA (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYF4_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 6.860e-9
Identity = 38/114 (33.33%), Postives = 54/114 (47.37%), Query Frame = 1
Query:    7 VPVSSSLEKWMIASSIFAGIYATLYFGWIMQHRQTVIVKLSQPFVCQLFLSGCVLLNVVVFHLGEPSDVVCAARPWVLHVGLTFTCSCLYLKTYRVQRVFNSVAKLSRISIKDR 348
            +P++S     + A + F  +YA  +  +I             P  C +FL GC  L           D VC ARPW+ HV LTFT SC+ +K +R  R+F+    L RI I +R
Sbjct:  894 IPLASRAGAGLTALAAFTALYAGGFAAFI-------------PLFCGMFLGGCAAL--------AGRDAVCMARPWLQHVLLTFTLSCILVKLHRAWRLFSFKNGLKRIKISNR 986          
BLAST of mRNA_H-elongata_contig16001.3859.1 vs. uniprot
Match: A0A0G4J476_PLABS (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J476_PLABS)

HSP 1 Score: 55.8 bits (133), Expect = 1.280e-6
Identity = 29/78 (37.18%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   91 IMQHRQTVIVKLSQPFVCQLFLSGCVLLNV--VVFHLGEPSDVVCAARPWVLHVGLTFTCSCLYLKTYRVQRVFNSVA 318
            I++HRQ+  +K   P +  L L+G VLL+   + F     SD++C  R W+  +G   T + L++KTYR+ R+FNS++
Sbjct:  556 IVRHRQSTRIKAFSPPLLLLSLAGAVLLSSASLTFAFLPASDLLCQWRWWMTALGFIVTFAPLFIKTYRINRIFNSLS 633          
BLAST of mRNA_H-elongata_contig16001.3859.1 vs. uniprot
Match: A0A0D2WJ31_CAPO3 (G_PROTEIN_RECEP_F3_4 domain-containing protein n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WJ31_CAPO3)

HSP 1 Score: 55.1 bits (131), Expect = 2.080e-6
Identity = 28/84 (33.33%), Postives = 44/84 (52.38%), Query Frame = 1
Query:  103 RQTVIVKLSQPFVCQLFLSGCVLLNVVVF--HLGEPSDVVCAARPWVLHVGLTFTCSCLYLKTYRVQRVFNSVAKLSRISIKDR 348
            R+  I++ + P   +L L G V+  + +F  +  +PS   C AR W+ H+G     + L+LKTYR+ RVF  V       + DR
Sbjct:   14 RRVRIIQSASPVYLELILLGAVMSMLWIFLDYSDDPSSSQCTARVWMRHLGFGVMFAALFLKTYRIARVFQQVTVSRSTPLSDR 97          
BLAST of mRNA_H-elongata_contig16001.3859.1 vs. uniprot
Match: A0A6V1PF52_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PF52_HETAK)

HSP 1 Score: 54.3 bits (129), Expect = 4.430e-6
Identity = 32/112 (28.57%), Postives = 52/112 (46.43%), Query Frame = 1
Query:    7 VPVSSSLEKWMIASSIFAGIYATLYFGWIMQHRQTVIVKLSQPFVCQLFLSGCVLLNVV-VFHLGEPSDVVCAARPWVLHVGLTFTCSCLYLKTYRVQRVFNSVAKLSRISI 339
            VP +S+  + + A          +  G ++  R+T  +K SQP    +F+   V +    V  LG P+   C  R W+ H+  T     L+LK YRV R+F +   L R+ +
Sbjct:  523 VPFASATGRAVCAVCTLGAGVGLVLLGAVVALRRTPDIKASQPVFLGIFVGAAVAVTASNVLGLGPPTAATCLGRAWLFHLAFTAMFGALFLKAYRVWRIFGN-KNLRRVKV 633          
BLAST of mRNA_H-elongata_contig16001.3859.1 vs. uniprot
Match: A0A0D2X112_CAPO3 (G_PROTEIN_RECEP_F3_4 domain-containing protein n=4 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X112_CAPO3)

HSP 1 Score: 53.5 bits (127), Expect = 8.190e-6
Identity = 34/113 (30.09%), Postives = 57/113 (50.44%), Query Frame = 1
Query:    4 LVPVSSSLEKWMIASSIFAGIYATL--YFGWIMQH-RQTVIVKLSQPFVCQLFLSGCVLLNVVVF--HLGEPSDVVCAARPWVLHVGLTFTCSCLYLKTYRVQRVFNSVAKLS 327
            L+  +S+     +A  + AG+   L    G +  H R+  I++ + P    L L G V+  + +F  +  +PS   C AR W+ H+G +   + L+LKTYR+ RVF +    S
Sbjct:  416 LITPASTSSAARVALFVLAGLIVLLCMIMGLMTWHFRRIRIIQSASPTYLLLILFGAVMSMLWIFLDYSDDPSTAQCTARVWMRHLGFSIMFTALFLKTYRIARVFKATVTKS 528          
BLAST of mRNA_H-elongata_contig16001.3859.1 vs. uniprot
Match: A0A0D2WRZ4_CAPO3 (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WRZ4_CAPO3)

HSP 1 Score: 52.8 bits (125), Expect = 1.520e-5
Identity = 27/77 (35.06%), Postives = 42/77 (54.55%), Query Frame = 1
Query:  103 RQTVIVKLSQPFVCQLFLSGCVLLNVVVF--HLGEPSDVVCAARPWVLHVGLTFTCSCLYLKTYRVQRVFNSVAKLS 327
            R+  I++ + P    L L G V+  + +F  +  +PS   C AR W+ H+G +   S L+LKTYR+ RVF +    S
Sbjct:  436 RRIRIIQSASPTYLLLILFGAVMSMLWIFLDYSDDPSTAQCTARVWMRHLGFSIMFSALFLKTYRIARVFKATVTKS 512          
BLAST of mRNA_H-elongata_contig16001.3859.1 vs. uniprot
Match: K3X561_GLOUD (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X561_GLOUD)

HSP 1 Score: 51.6 bits (122), Expect = 3.910e-5
Identity = 33/101 (32.67%), Postives = 57/101 (56.44%), Query Frame = 1
Query:   40 IASSIFAGIYATLYFGWIMQHRQTVIVKLSQPFVCQLFLSGCVLLNV-VVFHLGEPSDVVCAARPWVLHVGLTFTCSCLYLKTYRVQRVFNSVAKLSRISI 339
            I S +  G+   L   ++   R+  I+K SQ  + +L + G +L+ +  V + GEP++V+CAARP ++  G T     L++K+ RV RVF   + + R+ I
Sbjct:  586 ITSGVLIGVLV-LAMVFVFVCRKAPIIKRSQFELLELMIFGGILVCLSAVMYAGEPTNVLCAARPLLVSSGFTTIFGALFVKSLRVYRVFMK-SSMKRVKI 684          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16001.3859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LI90_ECTSI7.190e-2352.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2XWQ9_9STRA3.140e-1538.00Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A0D2WRC7_CAPO31.850e-1138.24G_PROTEIN_RECEP_F3_4 domain-containing protein n=1... [more]
A0A835YYF4_9STRA6.860e-933.33G_PROTEIN_RECEP_F3_4 domain-containing protein n=1... [more]
A0A0G4J476_PLABS1.280e-637.18G_PROTEIN_RECEP_F3_4 domain-containing protein n=1... [more]
A0A0D2WJ31_CAPO32.080e-633.33G_PROTEIN_RECEP_F3_4 domain-containing protein n=2... [more]
A0A6V1PF52_HETAK4.430e-628.57Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0D2X112_CAPO38.190e-630.09G_PROTEIN_RECEP_F3_4 domain-containing protein n=4... [more]
A0A0D2WRZ4_CAPO31.520e-535.06G_PROTEIN_RECEP_F3_4 domain-containing protein n=1... [more]
K3X561_GLOUD3.910e-532.67G_PROTEIN_RECEP_F3_4 domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16001contigH-elongata_contig16001:5447..6783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue1.9e-08
Seed eggNOG ortholog192875.XP_004346763.1
Preferred nameGPRMGL2
GOsGO:0005575,GO:0005623,GO:0005886,GO:0007154,GO:0007165,GO:0007186,GO:0008150,GO:0009987,GO:0016020,GO:0023052,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071944
EggNOG free text desc.G-protein coupled receptor activity
EggNOG OGsKOG4418@1,KOG4418@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size354
Cds size354
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16001.3859.1prot_H-elongata_contig16001.3859.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16001 5447..6783 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929940.150634-CDS-H-elongata_contig16001:5446..55341622929940.150634-CDS-H-elongata_contig16001:5446..5534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16001 5447..5534 -
1691679216.141263-CDS-H-elongata_contig16001:5446..55341691679216.141263-CDS-H-elongata_contig16001:5446..5534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16001 5447..5534 -
1622929940.1660962-CDS-H-elongata_contig16001:5986..60691622929940.1660962-CDS-H-elongata_contig16001:5986..6069Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16001 5987..6069 -
1691679216.1510406-CDS-H-elongata_contig16001:5986..60691691679216.1510406-CDS-H-elongata_contig16001:5986..6069Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16001 5987..6069 -
1622929940.1873658-CDS-H-elongata_contig16001:6190..62651622929940.1873658-CDS-H-elongata_contig16001:6190..6265Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16001 6191..6265 -
1691679216.1596014-CDS-H-elongata_contig16001:6190..62651691679216.1596014-CDS-H-elongata_contig16001:6190..6265Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16001 6191..6265 -
1622929940.203387-CDS-H-elongata_contig16001:6675..67831622929940.203387-CDS-H-elongata_contig16001:6675..6783Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16001 6676..6783 -
1691679216.1780019-CDS-H-elongata_contig16001:6675..67831691679216.1780019-CDS-H-elongata_contig16001:6675..6783Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16001 6676..6783 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16001.3859.1

>prot_H-elongata_contig16001.3859.1 ID=prot_H-elongata_contig16001.3859.1|Name=mRNA_H-elongata_contig16001.3859.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
GLVPVSSSLEKWMIASSIFAGIYATLYFGWIMQHRQTVIVKLSQPFVCQL
FLSGCVLLNVVVFHLGEPSDVVCAARPWVLHVGLTFTCSCLYLKTYRVQR
VFNSVAKLSRISIKDRY*
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mRNA from alignment at H-elongata_contig16001:5447..6783-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16001.3859.1 ID=mRNA_H-elongata_contig16001.3859.1|Name=mRNA_H-elongata_contig16001.3859.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1337bp|location=Sequence derived from alignment at H-elongata_contig16001:5447..6783- (Himanthalia elongata Himel1 dioecious)
GGTCTCGTTCCGGTCAGCTCTTCTCTGGAGAAGTGGATGATTGCGTCCTC TATTTTTGCAGGGATATACGCCACATTATACTTTGGGTGGATTATGCAAC ATCGTCAGGTGCGCACAGGAGTTGGAGGATTCTAGCCTAAGCGACGTGGA GCGACGATATATGAACGTTCGGGGTTGATAAGCCGAGTAGTGACGGAGGC GAAGCTAAAAATCAAATATTCCAAGGAAAACACAAGCCGTCCCCTCCAAA TTAGCTTCATGAGACGTCGAGATACAGAAAACAGGCGGTGACGGCGGTCG ATTCGAGAGAAAGCCTCCATGTCGTGCTCCTGGCAAACGACTGGCGGTGT CACACGCGTTCCAGCTGCTAGGGGACACTCCATATCCACGCATCGAGCAC GTCAACGATACGTAAATAAGGTTCAGGCTTGGGCAACTCTTCCCTCGTCG TGCAGCTACAATCGTACGTAAACGCTTCCTTCTGGTGCGATCTCTGTCCC ATTGTGTATCCACGGCAGACGGTAATCGTCAAGTTGAGCCAGCCATTCGT GTGCCAGTTGTTTTTGTCGGGCTGCGTTCTGCTGAATGTCGTGGTTATTT TTATTTAAAAGACTTTAGGCTCATTCTAACTCTCCAAACATCCACACCTC CATGCACCATAGGTGCAATCCAGGGAACCAACTATCAGAAAGCAGAAATG AGCAGGGACAATAGGTATTTCATCTTGGGGAGCCGTCGGATGTGGTATGC GCGGCACGACCATGGGTTCTGCACGTTGGGCTCACATTCACTTGCAGGTG CACCTATCGATCATTCGTGTGCTCATTGTTTCTTATCAAGTATAGAGCAG CTGGCTTGGTTGCACGTGCATGCAATGCAGGGATCAACTAACCGGGTGAC CAACTGTGCGCTGCCGGTATCACTTTGGTCTATATCAGTGCCATTCTCTG TGGAACCTAGTGCTAATACACATCATGTGAATTTATGGATATTGTCCGTC ACGCGATTGACGCCACGATAACTAGTTGGTGGAGTTGCGTATTAATGATA AGCTTAAACCTGTGCTTCTTACCACGCTCTGTTTCTGCCAGTGAGCGTTC AAACCTGAGGGGAGGGGGAGAGGGGGAGAACGAGAGAGAAAACAGTCCGT AGATCCGCACGCATCGTGAACCGGTTCTGTAACGAATTTTGTGGGGTGTT GACGTTCGTCGTCGATTTCGGCTCTGCTTCGCGTGTTCCTTCTCTTCAGT TGTCTCTATTTGAAGACGTACCGCGTGCAGCGAGTTTTCAACAGCGTGGC CAAGCTTTCCCGGATCTCGATCAAGGACAGGTACTGA
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Coding sequence (CDS) from alignment at H-elongata_contig16001:5447..6783-

>mRNA_H-elongata_contig16001.3859.1 ID=mRNA_H-elongata_contig16001.3859.1|Name=mRNA_H-elongata_contig16001.3859.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig16001:5447..6783- (Himanthalia elongata Himel1 dioecious)
GGTCTCGTTCCGGTCAGCTCTTCTCTGGAGAAGTGGATGATTGCGTCCTC
TATTTTTGCAGGGATATACGCCACATTATACTTTGGGTGGATTATGCAAC
ATCGTCAGGGTCTCGTTCCGGTCAGCTCTTCTCTGGAGAAGTGGATGATT
GCGTCCTCTATTTTTGCAGGGATATACGCCACATTATACTTTGGGTGGAT
TATGCAACATCGTCAGACGGTAATCGTCAAGTTGAGCCAGCCATTCGTGT
GCCAGTTGTTTTTGTCGGGCTGCGTTCTGCTGAATGTCGTGACGGTAATC
GTCAAGTTGAGCCAGCCATTCGTGTGCCAGTTGTTTTTGTCGGGCTGCGT
TCTGCTGAATGTCGTGGTATTTCATCTTGGGGAGCCGTCGGATGTGGTAT
GCGCGGCACGACCATGGGTTCTGCACGTTGGGCTCACATTCACTTGCAGG
TATTTCATCTTGGGGAGCCGTCGGATGTGGTATGCGCGGCACGACCATGG
GTTCTGCACGTTGGGCTCACATTCACTTGCAGTTGTCTCTATTTGAAGAC
GTACCGCGTGCAGCGAGTTTTCAACAGCGTGGCCAAGCTTTCCCGGATCT
CGATCAAGGACAGGTACTGATTGTCTCTATTTGAAGACGTACCGCGTGCA
GCGAGTTTTCAACAGCGTGGCCAAGCTTTCCCGGATCTCGATCAAGGACA
GGTACTGA
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