mRNA_H-elongata_contig15880.3805.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig15880.3805.1 vs. uniprot
Match: A0A6H5KD72_9PHAE (Lipoxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD72_9PHAE) HSP 1 Score: 133 bits (334), Expect = 6.170e-34 Identity = 68/121 (56.20%), Postives = 87/121 (71.90%), Query Frame = 1
Query: 1 KLFVVDHELLAGMDTTPVDEYDRYLAVGIALFEYQDGILNEVFPLKVIGIQLSQGDGDDIPPIFTPDDDDEGESWTWMIAKTCFEAADFIIHEVVSHLGFTHILMEGVIVALHRQLATEHP 363
KLFVVDH L+ ++T+P++ RYLA +ALFE D +E+ PLK +GIQLSQGD PIFTPDD + W IAK CFEAADF+IH+VVSHLG THI++E +V+++RQL EHP
Sbjct: 200 KLFVVDHHLIKDVETSPLEGIPRYLAPSVALFEAVD---DELLPLKPLGIQLSQGDS--ATPIFTPDD-----GYNWKIAKACFEAADFVIHQVVSHLGNTHIVLEAPMVSMYRQLPKEHP 310
BLAST of mRNA_H-elongata_contig15880.3805.1 vs. uniprot
Match: A0A6H5K920_9PHAE (Lipoxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K920_9PHAE) HSP 1 Score: 128 bits (321), Expect = 5.230e-32 Identity = 67/121 (55.37%), Postives = 85/121 (70.25%), Query Frame = 1
Query: 1 KLFVVDHELLAGMDTTPVDEYDRYLAVGIALFEYQDGILNEVFPLKVIGIQLSQGDGDDIPPIFTPDDDDEGESWTWMIAKTCFEAADFIIHEVVSHLGFTHILMEGVIVALHRQLATEHP 363
KLFVVD ++ + T P+++ RYLA +ALFE D +E+ PLK +GIQLSQGD PIFTPDD + W IAK CFEAADFIIHEVVSHL TH+++EG +V+++RQL EHP
Sbjct: 272 KLFVVDQHIVKEVQTAPLEDVPRYLAPCVALFEAVD---DELLPLKPVGIQLSQGDT--ATPIFTPDD-----GYNWKIAKACFEAADFIIHEVVSHLSNTHVVLEGPMVSMNRQLPKEHP 382
BLAST of mRNA_H-elongata_contig15880.3805.1 vs. uniprot
Match: D8LBX4_ECTSI (Lipoxygenase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBX4_ECTSI) HSP 1 Score: 119 bits (297), Expect = 9.490e-29 Identity = 65/121 (53.72%), Postives = 85/121 (70.25%), Query Frame = 1
Query: 1 KLFVVDHELLAGMDTTPVDEYDRYLAVGIALFEYQDGILNEVFPLKVIGIQLSQGDGDDIPPIFTPDDDDEGESWTWMIAKTCFEAADFIIHEVVSHLGFTHILMEGVIVALHRQLATEHP 363
KLFVVDHELL G++ RYL +ALFE D +++ P++ IGIQLSQG+ + PIFTP+D + W+IAK CFE+ADFI+HEVVSHLG THI++EG +VA++R L EHP
Sbjct: 256 KLFVVDHELLKGVE--------RYLTPSVALFEVID---DDLLPIRPIGIQLSQGE--EATPIFTPEDGNN-----WLIAKACFESADFIMHEVVSHLGSTHIVLEGPMVAVNRCLPKEHP 358
BLAST of mRNA_H-elongata_contig15880.3805.1 vs. uniprot
Match: UPI001D135274 (lipoxygenase n=2 Tax=Leptolyngbya ectocarpi TaxID=1202 RepID=UPI001D135274) HSP 1 Score: 88.6 bits (218), Expect = 4.770e-18 Identity = 49/123 (39.84%), Postives = 75/123 (60.98%), Query Frame = 1
Query: 1 KLFVVDHELLAGMDTTPVDEYDRYLAVGIALFEYQDGILNEVFPLKVIGIQLSQGDGDDIPPIFTPDDDD--EGESWTWMIAKTCFEAADFIIHEVVSHLGFTHILMEGVIVALHRQLATEHP 363
+L++ D+++L G+ T V + +YL +ALF G +EV L + IQ SQ G+ PIFTP + + W+W++AKT + AD HE++SHLG TH+L+E I+A ++QLA HP
Sbjct: 264 RLYLADYDVLEGVKTGKVADTQKYLWAPLALFAVPAGD-SEVRSLVPVAIQCSQKPGE---PIFTPPPPGTPQSQKWSWLMAKTIVQIADGNYHELISHLGRTHLLLEAFILATYQQLAPNHP 382
BLAST of mRNA_H-elongata_contig15880.3805.1 vs. uniprot
Match: UPI00177F48BF (arachidonate 15-lipoxygenase n=1 Tax=Pseudomarimonas arenosa TaxID=2774145 RepID=UPI00177F48BF) HSP 1 Score: 88.2 bits (217), Expect = 6.550e-18 Identity = 53/128 (41.41%), Postives = 74/128 (57.81%), Query Frame = 1
Query: 1 KLFVVDHELLAGMDTTPVDEYDRYLAVGIALFEYQDGILNEVFP----LKVIGIQLSQGDGDDIPPIFTPDD---DDEGESWTWMIAKTCFEAADFIIHEVVSHLGFTHILMEGVIVALHRQLATEHP 363
+L+VVD+ L G T + + RY+A IALF Y + FP L+ I IQL Q + PI+TP+D D+ + + W IAK A I HE V+HLG H+++E ++VA+HRQLAT HP
Sbjct: 291 RLYVVDYAQLEGAKTNSLHDEQRYIAAPIALF-YWNPTPPPGFPPGGALQPIAIQLGQRFDAEATPIYTPNDCAGGDDAKGYKWQIAKYIVNAVCAIQHESVAHLGDCHLIIEPMVVAMHRQLATSHP 417
BLAST of mRNA_H-elongata_contig15880.3805.1 vs. uniprot
Match: UPI001E1DA230 (allene oxide synthase-lipoxygenase protein-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DA230) HSP 1 Score: 85.9 bits (211), Expect = 4.210e-17 Identity = 50/121 (41.32%), Postives = 67/121 (55.37%), Query Frame = 1
Query: 1 KLFVVDHELLAGMDTTPVDEYDRYLAVGIALFEYQDGILNEVFPLKVIGIQLSQGDGDDIPPIFTPDDDDEGESWTWMIAKTCFEAADFIIHEVVSHLGFTHILMEGVIVALHRQLATEHP 363
++F+VD+E+L T P D + IALF L L I IQL Q DD P+F P D +TW++AK F AD IH+ ++HLGFTH++MEG+I HRQL+ HP
Sbjct: 287 RIFIVDYEILENCPTRP----DIQVCAPIALF-----FLRNDGSLVPIAIQLRQVPSDD-NPVFLPTD----PPYTWIMAKMWFNNADVCIHQAITHLGFTHLIMEGIITVTHRQLSQSHP 393
BLAST of mRNA_H-elongata_contig15880.3805.1 vs. uniprot
Match: UPI001458E029 (arachidonate 8S-lipoxygenase-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458E029) HSP 1 Score: 83.2 bits (204), Expect = 2.950e-16 Identity = 52/121 (42.98%), Postives = 67/121 (55.37%), Query Frame = 1
Query: 1 KLFVVDHELLAGMDTTPVDEYDRYLAVGIALFEYQDGILNEVFPLKVIGIQLSQGDGDDIPPIFTPDDDDEGESWTWMIAKTCFEAADFIIHEVVSHLGFTHILMEGVIVALHRQLATEHP 363
KLF VD EL G+ T P EY + IALF + D + L I IQL Q DD P+F P D +TW+ AK + AD H+ ++HLGFTH+LMEG ++A HR L+ HP
Sbjct: 37 KLFYVDLELQDGIPTRP--EYK--VCAPIALFYHND----QEASLVPIAIQLKQQPADD-NPVFLPSD----PPYTWLFAKMWYNNADTCYHQAITHLGFTHLLMEGCVLATHRNLSHSHP 144
BLAST of mRNA_H-elongata_contig15880.3805.1 vs. uniprot
Match: UPI001C40356A (hypothetical protein n=1 Tax=Anthocerotibacter panamensis TaxID=2857077 RepID=UPI001C40356A) HSP 1 Score: 83.2 bits (204), Expect = 3.630e-16 Identity = 47/123 (38.21%), Postives = 69/123 (56.10%), Query Frame = 1
Query: 1 KLFVVDHELLAGMDTTPVDEYDRYLAVGIALFEYQDGILNEVFPLKVIGIQLSQGDGDDIPPIFTPDDDDEGES--WTWMIAKTCFEAADFIIHEVVSHLGFTHILMEGVIVALHRQLATEHP 363
+L++ D+ +L ++ + +YL+ +ALF + GIL V IQLS G P+FTP WTW++AKT + AD HE++SHLG TH+L+E ++A HRQLA HP
Sbjct: 195 RLYLADYSVLRTVEAGSYPQDQKYLSAPLALFAVKAGILTPV------AIQLSPGG-----PLFTPTAAAASTQAYWTWLMAKTIVQIADANYHELISHLGRTHLLVEPFVLATHRQLAPNHP 306
BLAST of mRNA_H-elongata_contig15880.3805.1 vs. uniprot
Match: UPI001458FFE3 (arachidonate 5-lipoxygenase-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458FFE3) HSP 1 Score: 83.2 bits (204), Expect = 3.680e-16 Identity = 52/121 (42.98%), Postives = 67/121 (55.37%), Query Frame = 1
Query: 1 KLFVVDHELLAGMDTTPVDEYDRYLAVGIALFEYQDGILNEVFPLKVIGIQLSQGDGDDIPPIFTPDDDDEGESWTWMIAKTCFEAADFIIHEVVSHLGFTHILMEGVIVALHRQLATEHP 363
KLF VD EL G+ T P EY + IALF + D + L I IQL Q DD P+F P D +TW+ AK + AD H+ ++HLGFTH+LMEG ++A HR L+ HP
Sbjct: 260 KLFYVDLELQDGIPTRP--EYK--VCAPIALFYHND----QEASLVPIAIQLKQQPADD-NPVFLPSD----PPYTWLFAKMWYNNADTCYHQAITHLGFTHLLMEGCVLATHRNLSHSHP 367
BLAST of mRNA_H-elongata_contig15880.3805.1 vs. uniprot
Match: A0A6J8AH02_MYTCO (ALOX5 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8AH02_MYTCO) HSP 1 Score: 82.8 bits (203), Expect = 4.910e-16 Identity = 49/121 (40.50%), Postives = 70/121 (57.85%), Query Frame = 1
Query: 1 KLFVVDHELLAGMDTTPVDEYDRYLAVGIALFEYQDGILNEVFPLKVIGIQLSQGDGDDIPPIFTPDDDDEGESWTWMIAKTCFEAADFIIHEVVSHLGFTHILMEGVIVALHRQLATEHP 363
+LF++D LA ++ P D +A ALF + DG N + P I IQL Q +G P+F P D + +TWM+AK + AD H+ ++HL FTH++MEG+ VA+ RQLA HP
Sbjct: 258 RLFIID---LAILEDCPTQSKDLVMACPFALFYFNDG--NCLMP---IAIQLFQQNGPS-NPVFLPSDPE----YTWMLAKMWYSLADSTYHQAITHLNFTHLIMEGISVAVKRQLAHSHP 365 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15880.3805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15880.3805.1 >prot_H-elongata_contig15880.3805.1 ID=prot_H-elongata_contig15880.3805.1|Name=mRNA_H-elongata_contig15880.3805.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp KLFVVDHELLAGMDTTPVDEYDRYLAVGIALFEYQDGILNEVFPLKVIGIback to top mRNA from alignment at H-elongata_contig15880:3907..5444- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig15880.3805.1 ID=mRNA_H-elongata_contig15880.3805.1|Name=mRNA_H-elongata_contig15880.3805.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1538bp|location=Sequence derived from alignment at H-elongata_contig15880:3907..5444- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig15880:3907..5444- >mRNA_H-elongata_contig15880.3805.1 ID=mRNA_H-elongata_contig15880.3805.1|Name=mRNA_H-elongata_contig15880.3805.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig15880:3907..5444- (Himanthalia elongata Himel1 dioecious)back to top |