mRNA_H-elongata_contig15880.3805.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15880.3805.1
Unique NamemRNA_H-elongata_contig15880.3805.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15880.3805.1 vs. uniprot
Match: A0A6H5KD72_9PHAE (Lipoxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD72_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 6.170e-34
Identity = 68/121 (56.20%), Postives = 87/121 (71.90%), Query Frame = 1
Query:    1 KLFVVDHELLAGMDTTPVDEYDRYLAVGIALFEYQDGILNEVFPLKVIGIQLSQGDGDDIPPIFTPDDDDEGESWTWMIAKTCFEAADFIIHEVVSHLGFTHILMEGVIVALHRQLATEHP 363
            KLFVVDH L+  ++T+P++   RYLA  +ALFE  D   +E+ PLK +GIQLSQGD     PIFTPDD      + W IAK CFEAADF+IH+VVSHLG THI++E  +V+++RQL  EHP
Sbjct:  200 KLFVVDHHLIKDVETSPLEGIPRYLAPSVALFEAVD---DELLPLKPLGIQLSQGDS--ATPIFTPDD-----GYNWKIAKACFEAADFVIHQVVSHLGNTHIVLEAPMVSMYRQLPKEHP 310          
BLAST of mRNA_H-elongata_contig15880.3805.1 vs. uniprot
Match: A0A6H5K920_9PHAE (Lipoxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K920_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 5.230e-32
Identity = 67/121 (55.37%), Postives = 85/121 (70.25%), Query Frame = 1
Query:    1 KLFVVDHELLAGMDTTPVDEYDRYLAVGIALFEYQDGILNEVFPLKVIGIQLSQGDGDDIPPIFTPDDDDEGESWTWMIAKTCFEAADFIIHEVVSHLGFTHILMEGVIVALHRQLATEHP 363
            KLFVVD  ++  + T P+++  RYLA  +ALFE  D   +E+ PLK +GIQLSQGD     PIFTPDD      + W IAK CFEAADFIIHEVVSHL  TH+++EG +V+++RQL  EHP
Sbjct:  272 KLFVVDQHIVKEVQTAPLEDVPRYLAPCVALFEAVD---DELLPLKPVGIQLSQGDT--ATPIFTPDD-----GYNWKIAKACFEAADFIIHEVVSHLSNTHVVLEGPMVSMNRQLPKEHP 382          
BLAST of mRNA_H-elongata_contig15880.3805.1 vs. uniprot
Match: D8LBX4_ECTSI (Lipoxygenase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBX4_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 9.490e-29
Identity = 65/121 (53.72%), Postives = 85/121 (70.25%), Query Frame = 1
Query:    1 KLFVVDHELLAGMDTTPVDEYDRYLAVGIALFEYQDGILNEVFPLKVIGIQLSQGDGDDIPPIFTPDDDDEGESWTWMIAKTCFEAADFIIHEVVSHLGFTHILMEGVIVALHRQLATEHP 363
            KLFVVDHELL G++        RYL   +ALFE  D   +++ P++ IGIQLSQG+  +  PIFTP+D +      W+IAK CFE+ADFI+HEVVSHLG THI++EG +VA++R L  EHP
Sbjct:  256 KLFVVDHELLKGVE--------RYLTPSVALFEVID---DDLLPIRPIGIQLSQGE--EATPIFTPEDGNN-----WLIAKACFESADFIMHEVVSHLGSTHIVLEGPMVAVNRCLPKEHP 358          
BLAST of mRNA_H-elongata_contig15880.3805.1 vs. uniprot
Match: UPI001D135274 (lipoxygenase n=2 Tax=Leptolyngbya ectocarpi TaxID=1202 RepID=UPI001D135274)

HSP 1 Score: 88.6 bits (218), Expect = 4.770e-18
Identity = 49/123 (39.84%), Postives = 75/123 (60.98%), Query Frame = 1
Query:    1 KLFVVDHELLAGMDTTPVDEYDRYLAVGIALFEYQDGILNEVFPLKVIGIQLSQGDGDDIPPIFTPDDDD--EGESWTWMIAKTCFEAADFIIHEVVSHLGFTHILMEGVIVALHRQLATEHP 363
            +L++ D+++L G+ T  V +  +YL   +ALF    G  +EV  L  + IQ SQ  G+   PIFTP      + + W+W++AKT  + AD   HE++SHLG TH+L+E  I+A ++QLA  HP
Sbjct:  264 RLYLADYDVLEGVKTGKVADTQKYLWAPLALFAVPAGD-SEVRSLVPVAIQCSQKPGE---PIFTPPPPGTPQSQKWSWLMAKTIVQIADGNYHELISHLGRTHLLLEAFILATYQQLAPNHP 382          
BLAST of mRNA_H-elongata_contig15880.3805.1 vs. uniprot
Match: UPI00177F48BF (arachidonate 15-lipoxygenase n=1 Tax=Pseudomarimonas arenosa TaxID=2774145 RepID=UPI00177F48BF)

HSP 1 Score: 88.2 bits (217), Expect = 6.550e-18
Identity = 53/128 (41.41%), Postives = 74/128 (57.81%), Query Frame = 1
Query:    1 KLFVVDHELLAGMDTTPVDEYDRYLAVGIALFEYQDGILNEVFP----LKVIGIQLSQGDGDDIPPIFTPDD---DDEGESWTWMIAKTCFEAADFIIHEVVSHLGFTHILMEGVIVALHRQLATEHP 363
            +L+VVD+  L G  T  + +  RY+A  IALF Y +      FP    L+ I IQL Q    +  PI+TP+D    D+ + + W IAK    A   I HE V+HLG  H+++E ++VA+HRQLAT HP
Sbjct:  291 RLYVVDYAQLEGAKTNSLHDEQRYIAAPIALF-YWNPTPPPGFPPGGALQPIAIQLGQRFDAEATPIYTPNDCAGGDDAKGYKWQIAKYIVNAVCAIQHESVAHLGDCHLIIEPMVVAMHRQLATSHP 417          
BLAST of mRNA_H-elongata_contig15880.3805.1 vs. uniprot
Match: UPI001E1DA230 (allene oxide synthase-lipoxygenase protein-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DA230)

HSP 1 Score: 85.9 bits (211), Expect = 4.210e-17
Identity = 50/121 (41.32%), Postives = 67/121 (55.37%), Query Frame = 1
Query:    1 KLFVVDHELLAGMDTTPVDEYDRYLAVGIALFEYQDGILNEVFPLKVIGIQLSQGDGDDIPPIFTPDDDDEGESWTWMIAKTCFEAADFIIHEVVSHLGFTHILMEGVIVALHRQLATEHP 363
            ++F+VD+E+L    T P    D  +   IALF      L     L  I IQL Q   DD  P+F P D      +TW++AK  F  AD  IH+ ++HLGFTH++MEG+I   HRQL+  HP
Sbjct:  287 RIFIVDYEILENCPTRP----DIQVCAPIALF-----FLRNDGSLVPIAIQLRQVPSDD-NPVFLPTD----PPYTWIMAKMWFNNADVCIHQAITHLGFTHLIMEGIITVTHRQLSQSHP 393          
BLAST of mRNA_H-elongata_contig15880.3805.1 vs. uniprot
Match: UPI001458E029 (arachidonate 8S-lipoxygenase-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458E029)

HSP 1 Score: 83.2 bits (204), Expect = 2.950e-16
Identity = 52/121 (42.98%), Postives = 67/121 (55.37%), Query Frame = 1
Query:    1 KLFVVDHELLAGMDTTPVDEYDRYLAVGIALFEYQDGILNEVFPLKVIGIQLSQGDGDDIPPIFTPDDDDEGESWTWMIAKTCFEAADFIIHEVVSHLGFTHILMEGVIVALHRQLATEHP 363
            KLF VD EL  G+ T P  EY   +   IALF + D    +   L  I IQL Q   DD  P+F P D      +TW+ AK  +  AD   H+ ++HLGFTH+LMEG ++A HR L+  HP
Sbjct:   37 KLFYVDLELQDGIPTRP--EYK--VCAPIALFYHND----QEASLVPIAIQLKQQPADD-NPVFLPSD----PPYTWLFAKMWYNNADTCYHQAITHLGFTHLLMEGCVLATHRNLSHSHP 144          
BLAST of mRNA_H-elongata_contig15880.3805.1 vs. uniprot
Match: UPI001C40356A (hypothetical protein n=1 Tax=Anthocerotibacter panamensis TaxID=2857077 RepID=UPI001C40356A)

HSP 1 Score: 83.2 bits (204), Expect = 3.630e-16
Identity = 47/123 (38.21%), Postives = 69/123 (56.10%), Query Frame = 1
Query:    1 KLFVVDHELLAGMDTTPVDEYDRYLAVGIALFEYQDGILNEVFPLKVIGIQLSQGDGDDIPPIFTPDDDDEGES--WTWMIAKTCFEAADFIIHEVVSHLGFTHILMEGVIVALHRQLATEHP 363
            +L++ D+ +L  ++     +  +YL+  +ALF  + GIL  V       IQLS G      P+FTP          WTW++AKT  + AD   HE++SHLG TH+L+E  ++A HRQLA  HP
Sbjct:  195 RLYLADYSVLRTVEAGSYPQDQKYLSAPLALFAVKAGILTPV------AIQLSPGG-----PLFTPTAAAASTQAYWTWLMAKTIVQIADANYHELISHLGRTHLLVEPFVLATHRQLAPNHP 306          
BLAST of mRNA_H-elongata_contig15880.3805.1 vs. uniprot
Match: UPI001458FFE3 (arachidonate 5-lipoxygenase-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458FFE3)

HSP 1 Score: 83.2 bits (204), Expect = 3.680e-16
Identity = 52/121 (42.98%), Postives = 67/121 (55.37%), Query Frame = 1
Query:    1 KLFVVDHELLAGMDTTPVDEYDRYLAVGIALFEYQDGILNEVFPLKVIGIQLSQGDGDDIPPIFTPDDDDEGESWTWMIAKTCFEAADFIIHEVVSHLGFTHILMEGVIVALHRQLATEHP 363
            KLF VD EL  G+ T P  EY   +   IALF + D    +   L  I IQL Q   DD  P+F P D      +TW+ AK  +  AD   H+ ++HLGFTH+LMEG ++A HR L+  HP
Sbjct:  260 KLFYVDLELQDGIPTRP--EYK--VCAPIALFYHND----QEASLVPIAIQLKQQPADD-NPVFLPSD----PPYTWLFAKMWYNNADTCYHQAITHLGFTHLLMEGCVLATHRNLSHSHP 367          
BLAST of mRNA_H-elongata_contig15880.3805.1 vs. uniprot
Match: A0A6J8AH02_MYTCO (ALOX5 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8AH02_MYTCO)

HSP 1 Score: 82.8 bits (203), Expect = 4.910e-16
Identity = 49/121 (40.50%), Postives = 70/121 (57.85%), Query Frame = 1
Query:    1 KLFVVDHELLAGMDTTPVDEYDRYLAVGIALFEYQDGILNEVFPLKVIGIQLSQGDGDDIPPIFTPDDDDEGESWTWMIAKTCFEAADFIIHEVVSHLGFTHILMEGVIVALHRQLATEHP 363
            +LF++D   LA ++  P    D  +A   ALF + DG  N + P   I IQL Q +G    P+F P D +    +TWM+AK  +  AD   H+ ++HL FTH++MEG+ VA+ RQLA  HP
Sbjct:  258 RLFIID---LAILEDCPTQSKDLVMACPFALFYFNDG--NCLMP---IAIQLFQQNGPS-NPVFLPSDPE----YTWMLAKMWYSLADSTYHQAITHLNFTHLIMEGISVAVKRQLAHSHP 365          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15880.3805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KD72_9PHAE6.170e-3456.20Lipoxygenase domain-containing protein n=2 Tax=Ect... [more]
A0A6H5K920_9PHAE5.230e-3255.37Lipoxygenase domain-containing protein n=2 Tax=Ect... [more]
D8LBX4_ECTSI9.490e-2953.72Lipoxygenase n=2 Tax=Ectocarpus siliculosus TaxID=... [more]
UPI001D1352744.770e-1839.84lipoxygenase n=2 Tax=Leptolyngbya ectocarpi TaxID=... [more]
UPI00177F48BF6.550e-1841.41arachidonate 15-lipoxygenase n=1 Tax=Pseudomarimon... [more]
UPI001E1DA2304.210e-1741.32allene oxide synthase-lipoxygenase protein-like n=... [more]
UPI001458E0292.950e-1642.98arachidonate 8S-lipoxygenase-like n=1 Tax=Pecten m... [more]
UPI001C40356A3.630e-1638.21hypothetical protein n=1 Tax=Anthocerotibacter pan... [more]
UPI001458FFE33.680e-1642.98arachidonate 5-lipoxygenase-like n=1 Tax=Pecten ma... [more]
A0A6J8AH02_MYTCO4.910e-1640.50ALOX5 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15880contigH-elongata_contig15880:3907..5444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.8
Seed ortholog evalue8.6e-28
Seed eggNOG ortholog2880.D7G112
KEGG rclassRC00561,RC00839,RC02139
KEGG koko:K00461
KEGG ReactionR01595,R03058,R08527
KEGG Pathwayko00590,ko01100,ko04664,ko04726,ko04913,ko05145,map00590,map01100,map04664,map04726,map04913,map05145
EggNOG free text desc.oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
EggNOG OGs28IFU@1,2QQSP@2759
EC1.13.11.34
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons4
Model size364
Cds size363
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15880.3805.1prot_H-elongata_contig15880.3805.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15880 3908..5444 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929935.3390608-CDS-H-elongata_contig15880:3907..40011622929935.3390608-CDS-H-elongata_contig15880:3907..4001Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15880 3908..4001 -
1691679214.078076-CDS-H-elongata_contig15880:3907..40011691679214.078076-CDS-H-elongata_contig15880:3907..4001Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15880 3908..4001 -
1622929935.3655438-CDS-H-elongata_contig15880:4654..47701622929935.3655438-CDS-H-elongata_contig15880:4654..4770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15880 4655..4770 -
1691679214.0888422-CDS-H-elongata_contig15880:4654..47701691679214.0888422-CDS-H-elongata_contig15880:4654..4770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15880 4655..4770 -
1622929935.382934-CDS-H-elongata_contig15880:5034..51541622929935.382934-CDS-H-elongata_contig15880:5034..5154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15880 5035..5154 -
1691679214.09847-CDS-H-elongata_contig15880:5034..51541691679214.09847-CDS-H-elongata_contig15880:5034..5154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15880 5035..5154 -
1622929935.397861-CDS-H-elongata_contig15880:5411..54441622929935.397861-CDS-H-elongata_contig15880:5411..5444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15880 5412..5444 -
1691679214.107562-CDS-H-elongata_contig15880:5411..54441691679214.107562-CDS-H-elongata_contig15880:5411..5444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15880 5412..5444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15880.3805.1

>prot_H-elongata_contig15880.3805.1 ID=prot_H-elongata_contig15880.3805.1|Name=mRNA_H-elongata_contig15880.3805.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
KLFVVDHELLAGMDTTPVDEYDRYLAVGIALFEYQDGILNEVFPLKVIGI
QLSQGDGDDIPPIFTPDDDDEGESWTWMIAKTCFEAADFIIHEVVSHLGF
THILMEGVIVALHRQLATEHP
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mRNA from alignment at H-elongata_contig15880:3907..5444-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15880.3805.1 ID=mRNA_H-elongata_contig15880.3805.1|Name=mRNA_H-elongata_contig15880.3805.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1538bp|location=Sequence derived from alignment at H-elongata_contig15880:3907..5444- (Himanthalia elongata Himel1 dioecious)
AAACTCTTCGTCGTAGACCACGAGCTATTGGCGGTGAGTCTACTAGGTGA TCCAACATTAATTTGATACACGATACGCAAAATACTACCCATTATTCTTA TTGGTTCTCTCGTTCGCGTTCTTGACACACATACACACGTCGTCGAGGGA TGCTGACCTCGTGGCGAAACCTTGTGTTCATCTTCTTTATGCTAAAGAGA AAAGACCGCAGTCGTGGCTGACCTCACCGAAGCACCTCCCCGCAACTTCA AAACGTTGCTATCGGTAAATTCTTCCGATTACTTACTCAGGGCATGGACA CTACGCCAGTGGACGAGTACGACCGATACCTAGCAGTGGGCATCGCCTTG TTTGAATATCAAGACGGTATTCTCAACGAAGTTTTTCCCCTCAAGGTCAT CGGGATCCAGGTGATCAAGTATCCTTTTTTTTACCGCCATATCGTTTCAA TTTGGAGAGTGCCTCGAACGTTTTCCTCCTTCCGGGTGGTGGTTTTCTAC CTTGTGACCACGACCTGGATTTTGATATCAGCTTATGTGAGAATTCAATA ATAATAATAATAATAAAATGCTATTGTGAAGTATTTATGCTGCAAGCGGG CGATGTCGAAGGGATTCACCAGTTCGATATATGTGATGCGTACAACACAT ATTTTGTATACCTCGCCTATGCAGCTGAGTCAAGGGGATGGTGATGACAT CCCCCCAATCTTTACACCCGACGACGATGACGAAGGAGAATCATGGACGT GGATGATTGCAAAGACGTGCTTTGAGGCTGCCGATTTCATGTAAGATGAG ACGAAAGTGCTATCTTGTGGGCGTGAGTTGCTCCGCCACAAAATGAGTTG AGAAAGATGGAAGAATTTCGTCCGTTTATGGCCAAGCGCTGCGATTTTGC TCTAGACCACCATGATAAAGTACCAAGAGGGAAGAAGCGAGAAAGTATGC GTAATTTACTCGTGTCTATAAAGTGCCGGGGTCAAACCTTCACGACCGCG CGTGAACAACGCGGTTTTTATTTAAAAGACCTTGAACCAAATCATCATTG CGACTTAACCGGGTACTGCATGTTAGCATGTACAGTATGTACTTGTTTGT TGCAAAACGTGTGTTTACTAGGAAAGCGAACATTTCATTATCATCGCCGA CGTCAAAGTGCAAGTTTGCCCTAGGGCGTACGTTGCGCACGATTTGCTTC TTGGTGCTGTTGTTGGTTCATTGCAGAACGATCCGCGAACACAGCCGTTT GTAATTTGCAATGACACTATCCATCTGAACATCATCTGACAAACGACACA TGAAAACACGTTTAATCATTACCAAGCTGTCAATGAGTAATATTATTATT TGATCGCACACAGAGAGAGCAGCCCACGCAGGCACAAAAATATAGTCGGA GATAAACGGTAGAGTTTTACCTGGCATTGCGTGTACGCCACAGTATCCAC GAGGTCGTTTCACACCTGGGCTTCACGCACATCCTGATGGAGGGTGTCAT TGTGGCGCTTCATCGTCAGCTAGCAACGGAACATCCCA
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Coding sequence (CDS) from alignment at H-elongata_contig15880:3907..5444-

>mRNA_H-elongata_contig15880.3805.1 ID=mRNA_H-elongata_contig15880.3805.1|Name=mRNA_H-elongata_contig15880.3805.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig15880:3907..5444- (Himanthalia elongata Himel1 dioecious)
AAACTCTTCGTCGTAGACCACGAGCTATTGGCGAAACTCTTCGTCGTAGA
CCACGAGCTATTGGCGGGCATGGACACTACGCCAGTGGACGAGTACGACC
GATACCTAGCAGTGGGCATCGCCTTGTTTGAATATCAAGACGGTATTCTC
AACGAAGTTTTTCCCCTCAAGGTCATCGGGATCCAGGGCATGGACACTAC
GCCAGTGGACGAGTACGACCGATACCTAGCAGTGGGCATCGCCTTGTTTG
AATATCAAGACGGTATTCTCAACGAAGTTTTTCCCCTCAAGGTCATCGGG
ATCCAGCTGAGTCAAGGGGATGGTGATGACATCCCCCCAATCTTTACACC
CGACGACGATGACGAAGGAGAATCATGGACGTGGATGATTGCAAAGACGT
GCTTTGAGGCTGCCGATTTCATCTGAGTCAAGGGGATGGTGATGACATCC
CCCCAATCTTTACACCCGACGACGATGACGAAGGAGAATCATGGACGTGG
ATGATTGCAAAGACGTGCTTTGAGGCTGCCGATTTCATTATCCACGAGGT
CGTTTCACACCTGGGCTTCACGCACATCCTGATGGAGGGTGTCATTGTGG
CGCTTCATCGTCAGCTAGCAACGGAACATCCCTATCCACGAGGTCGTTTC
ACACCTGGGCTTCACGCACATCCTGATGGAGGGTGTCATTGTGGCGCTTC
ATCGTCAGCTAGCAACGGAACATCCC
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