mRNA_H-elongata_contig15799.3768.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15799.3768.1
Unique NamemRNA_H-elongata_contig15799.3768.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15799.3768.1 vs. uniprot
Match: D8LP09_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LP09_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 8.910e-45
Identity = 85/121 (70.25%), Postives = 97/121 (80.17%), Query Frame = 1
Query:    4 LETQRLMLSPRALQQGWKEELDGNIEQHHGWITERKLEAVFGGSLPARELEEEVLQRKETLDKTRRRATQLADWRDMEIRGIFDSEARRRFDDKHLDERRKAADEKRKWAVSHVTHSGKPD 366
            L+TQR+MLSPRALQQGWKEELD NI QH  WIT+RKLEAVF  SLPARELEE+V +R     + +R+A +LA WRD E+  IFD EAR+RFDD+HL  R K ADEKRKWAV HVTHSGKPD
Sbjct:  438 LKTQRMMLSPRALQQGWKEELDSNIGQHKEWITKRKLEAVFEASLPARELEEQVERRDWLFSERKRQAARLARWRDTEMAEIFDREARKRFDDQHLQNRHKVADEKRKWAVRHVTHSGKPD 558          
BLAST of mRNA_H-elongata_contig15799.3768.1 vs. uniprot
Match: A0A7S1G3Q0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G3Q0_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 3.490e-20
Identity = 49/121 (40.50%), Postives = 74/121 (61.16%), Query Frame = 1
Query:    4 LETQRLMLSPRALQQGWKEELDGNIEQHHGWITERKLEAVFGGSLPARELEEEVLQRKETLDKTRRRATQLADWRDMEIRGIFDSEARRRFDDKHLDERRKAADEKRKWAVSHVTHSGKPD 366
            L+ +R+ +SPRA++QGW EELD N+EQH  W T+ KL+A+F  +LP R +EEE  +  +     + R  QL +W  M+   +   E+ R++   H + R+  A +KRKWA    T +GKPD
Sbjct:   58 LQRERMKMSPRAVEQGWTEELDKNVEQHRVWTTDAKLKALFQVALPLRLMEEEKEKNDQEYADLKYRREQLDEWWRMDRDDMXXXESERKWALHHENRRKNIAGQKRKWAFQFYTDTGKPD 178          
BLAST of mRNA_H-elongata_contig15799.3768.1 vs. uniprot
Match: A0A5D6XLP7_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLP7_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 6.240e-15
Identity = 44/121 (36.36%), Postives = 69/121 (57.02%), Query Frame = 1
Query:    4 LETQRLMLSPRALQQGWKEELDGNIEQHHGWITERKLEAVFGGSLPARELEEEVLQRKETLDKTRRRATQLADWRDMEIRGIFDSEARRRFDDKHLDERRKAADEKRKWAVSHVTHSGKPD 366
            ++TQRL +SPRA++QGW EE++G ++     IT+ KLE VF   L  ++ EE +L  +  L     R      WR+ E    ++ E   +   +  D R+K AD++R+WA++    SGKPD
Sbjct:  385 MQTQRLRVSPRAIEQGWVEEMEGKMKLQRAAITKLKLETVFQLGLELKQKEELLLDFRRRLRDLEERRRNFEIWREEEFLSYWERECLYQHTQRLADRRKKVADQRRRWAITRYHRSGKPD 505          
BLAST of mRNA_H-elongata_contig15799.3768.1 vs. uniprot
Match: A0A2P4XVI8_9STRA (IQGAP protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XVI8_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.580e-14
Identity = 40/121 (33.06%), Postives = 75/121 (61.98%), Query Frame = 1
Query:    4 LETQRLMLSPRALQQGWKEELDGNIEQHHGWITERKLEAVFGGSLPARELEEEVLQRKETLDKTRRRATQLADWRDMEIRGIFDSEARRRFDDKHLDERRKAADEKRKWAVSHVTHSGKPD 366
            ++TQR+ +SPRA++ GW EE++  ++Q    IT+ KLE VFG  L  ++ E+E+++ ++ +++   +  +L  WR+ E    ++ E R R+  K + +R++ A+ +R+W V     SGK D
Sbjct:  321 MQTQRMRVSPRAIEHGWVEEMEAKMKQQRALITKLKLETVFGLGLEFKQKEKELIECRQLINEIEEKRRRLEIWRNEEFLDYWERECRFRYQAKLIQKRQQVAENRRRWQVQFYHTSGKRD 441          
BLAST of mRNA_H-elongata_contig15799.3768.1 vs. uniprot
Match: A0A7S1TNU7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TNU7_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 7.300e-13
Identity = 43/121 (35.54%), Postives = 70/121 (57.85%), Query Frame = 1
Query:    4 LETQRLMLSPRALQQGWKEELDGNIEQHHGWITERKLEAVFGGSLPARELEEEVLQRKETLDKTRRRATQLADWRDMEIRGIFDSEARRRFDDKHLDERRKAADEKRKWAVSHVTHSGKPD 366
            +E Q+ MLSPRAL+ GW ++L  N      ++T  K+EA+F  +L  R++E  +   +  LD  ++   ++  +R  EI    + E+RR+F+  + +  R+ ADEKR W + H T  GKPD
Sbjct:  165 IERQQQMLSPRALEGGWAQQLRENRASAAKFVTGAKMEALFTHALEVRKIERGLASWETKLDDAQQFVVRVKGYRTEEIDEKLERESRRKFNASYRNRLRRIADEKRLWRIRHYTDDGKPD 285          
BLAST of mRNA_H-elongata_contig15799.3768.1 vs. uniprot
Match: D0MYQ5_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MYQ5_PHYIT)

HSP 1 Score: 73.2 bits (178), Expect = 1.230e-12
Identity = 38/121 (31.40%), Postives = 69/121 (57.02%), Query Frame = 1
Query:    4 LETQRLMLSPRALQQGWKEELDGNIEQHHGWITERKLEAVFGGSLPARELEEEVLQRKETLDKTRRRATQLADWRDMEIRGIFDSEARRRFDDKHLDERRKAADEKRKWAVSHVTHSGKPD 366
            ++TQR+ +SPRA++ GW EE++  ++Q    IT+ K+E VFG  L  +  E E++  ++ ++ T  +  +   WR+ E    ++ E R R+  K +  R+  A+ +R+W + H    GK D
Sbjct:  395 MQTQRMRVSPRAIEHGWVEEMEAKMKQQRVLITKLKIETVFGLGLEFKRKENELVNFQKRINATEEKRRRFEIWRNEEYLEFWERECRFRYQAKIVQNRQHVAETRRRWQIQHYRTDGKRD 515          
BLAST of mRNA_H-elongata_contig15799.3768.1 vs. uniprot
Match: A0A225X2Q8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X2Q8_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.470e-11
Identity = 36/121 (29.75%), Postives = 72/121 (59.50%), Query Frame = 1
Query:    4 LETQRLMLSPRALQQGWKEELDGNIEQHHGWITERKLEAVFGGSLPARELEEEVLQRKETLDKTRRRATQLADWRDMEIRGIFDSEARRRFDDKHLDERRKAADEKRKWAVSHVTHSGKPD 366
            ++TQR+ +SPRA++ GW EE++  ++Q    IT+ KLE +FG  L  ++ E+E+++ ++ +++   +  +   WR  E    ++ E R R   K + +R++ ++ +R+W V     +GK D
Sbjct:  333 MQTQRMRVSPRAIEHGWVEEMEVKMKQQRALITKLKLETIFGLGLEFKQKEKELVESQQIINEIEEKRRRFEIWRHEEFLDYWERECRFRHQAKLIQKRQQISETRRRWQVQFYHTNGKRD 453          
BLAST of mRNA_H-elongata_contig15799.3768.1 vs. uniprot
Match: A0A329T0M8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329T0M8_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 5.080e-11
Identity = 36/121 (29.75%), Postives = 71/121 (58.68%), Query Frame = 1
Query:    4 LETQRLMLSPRALQQGWKEELDGNIEQHHGWITERKLEAVFGGSLPARELEEEVLQRKETLDKTRRRATQLADWRDMEIRGIFDSEARRRFDDKHLDERRKAADEKRKWAVSHVTHSGKPD 366
            ++TQR+ +SPRA++ GW EE++  ++Q    IT+ KLE VF   L  +  E+E+++ ++ ++    +  +   WR+ E    ++ E R R+  K + +R++ A+ +R+W +     +GK D
Sbjct:  336 MQTQRMRVSPRAIEHGWVEEMEAKMKQQRALITKLKLETVFELGLEFKRKEKELVEFQQRINAIEEKRRRFEIWRNEEYLDNWERECRFRYQAKIIQKRQQVAETRRRWQIQLYRTNGKSD 456          
BLAST of mRNA_H-elongata_contig15799.3768.1 vs. uniprot
Match: W2IER2_PHYPR (Uncharacterized protein n=3 Tax=Phytophthora parasitica TaxID=4792 RepID=W2IER2_PHYPR)

HSP 1 Score: 67.4 bits (163), Expect = 1.230e-10
Identity = 36/121 (29.75%), Postives = 68/121 (56.20%), Query Frame = 1
Query:    4 LETQRLMLSPRALQQGWKEELDGNIEQHHGWITERKLEAVFGGSLPARELEEEVLQRKETLDKTRRRATQLADWRDMEIRGIFDSEARRRFDDKHLDERRKAADEKRKWAVSHVTHSGKPD 366
            ++TQR+ +SPRA++ GW EE++  ++Q    IT+ KLE +F   L  +  E+E ++ ++ ++    +  +   WR+ E    ++ E R  +  K + +R+K A+ +R W V     +GK D
Sbjct:  155 MQTQRMRVSPRAIEHGWVEEMEAKMKQQRALITKVKLEVIFALGLEFKRKEKEFIEFQQRINAIEEKRRRFEIWRNEEYLDFWERECRFHYQVKIMQKRQKIAETRRSWQVQLYRTNGKRD 275          
BLAST of mRNA_H-elongata_contig15799.3768.1 vs. uniprot
Match: V9EJG5_PHYPR (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=V9EJG5_PHYPR)

HSP 1 Score: 67.4 bits (163), Expect = 1.300e-10
Identity = 36/121 (29.75%), Postives = 68/121 (56.20%), Query Frame = 1
Query:    4 LETQRLMLSPRALQQGWKEELDGNIEQHHGWITERKLEAVFGGSLPARELEEEVLQRKETLDKTRRRATQLADWRDMEIRGIFDSEARRRFDDKHLDERRKAADEKRKWAVSHVTHSGKPD 366
            ++TQR+ +SPRA++ GW EE++  ++Q    IT+ KLE +F   L  +  E+E ++ ++ ++    +  +   WR+ E    ++ E R  +  K + +R+K A+ +R W V     +GK D
Sbjct:  395 MQTQRMRVSPRAIEHGWVEEMEAKMKQQRALITKVKLEVIFALGLEFKRKEKEFIEFQQRINAIEEKRRRFEIWRNEEYLDFWERECRFHYQVKIMQKRQKIAETRRSWQVQLYRTNGKRD 515          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15799.3768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LP09_ECTSI8.910e-4570.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1G3Q0_9STRA3.490e-2040.50Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A5D6XLP7_9STRA6.240e-1536.36Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2P4XVI8_9STRA1.580e-1433.06IQGAP protein n=1 Tax=Phytophthora palmivora var. ... [more]
A0A7S1TNU7_9STRA7.300e-1335.54Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
D0MYQ5_PHYIT1.230e-1231.40Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
A0A225X2Q8_9STRA1.470e-1129.75Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A329T0M8_9STRA5.080e-1129.75Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
W2IER2_PHYPR1.230e-1029.75Uncharacterized protein n=3 Tax=Phytophthora paras... [more]
V9EJG5_PHYPR1.300e-1029.75Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15799contigH-elongata_contig15799:6778..7696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.0
Seed ortholog evalue1.1e-38
Seed eggNOG ortholog2880.D8LP09
EggNOG OGs28PRS@1,2QWE8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size366
Cds size366
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15799.3768.1prot_H-elongata_contig15799.3768.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15799 6778..7696 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929931.4948428-CDS-H-elongata_contig15799:6777..68371622929931.4948428-CDS-H-elongata_contig15799:6777..6837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15799 6778..6837 -
1691679212.701677-CDS-H-elongata_contig15799:6777..68371691679212.701677-CDS-H-elongata_contig15799:6777..6837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15799 6778..6837 -
1622929931.511909-CDS-H-elongata_contig15799:7151..72891622929931.511909-CDS-H-elongata_contig15799:7151..7289Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15799 7152..7289 -
1691679212.7158244-CDS-H-elongata_contig15799:7151..72891691679212.7158244-CDS-H-elongata_contig15799:7151..7289Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15799 7152..7289 -
1622929931.5251172-CDS-H-elongata_contig15799:7528..76961622929931.5251172-CDS-H-elongata_contig15799:7528..7696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15799 7529..7696 -
1691679212.727705-CDS-H-elongata_contig15799:7528..76961691679212.727705-CDS-H-elongata_contig15799:7528..7696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15799 7529..7696 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15799.3768.1

>prot_H-elongata_contig15799.3768.1 ID=prot_H-elongata_contig15799.3768.1|Name=mRNA_H-elongata_contig15799.3768.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
MLETQRLMLSPRALQQGWKEELDGNIEQHHGWITERKLEAVFGGSLPARE
LEEEVLQRKETLDKTRRRATQLADWRDMEIRGIFDSEARRRFDDKHLDER
RKAADEKRKWAVSHVTHSGKPD
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mRNA from alignment at H-elongata_contig15799:6778..7696-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15799.3768.1 ID=mRNA_H-elongata_contig15799.3768.1|Name=mRNA_H-elongata_contig15799.3768.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=919bp|location=Sequence derived from alignment at H-elongata_contig15799:6778..7696- (Himanthalia elongata Himel1 dioecious)
ATGCTGGAGACACAGAGGCTGATGCTGAGCCCTCGAGCCCTGCAGCAGGG CTGGAAGGAAGAGCTAGACGGCAACATCGAGCAGCATCACGGCTGGATCA CGGAGCGCAAGCTGGAGGCCGTATTCGGCGGGTCTTTACCGGCCAGAGAA CTCGAGGAGGAGGTACTAGTGCGACCGCGCTGCATCACGCCAGACCTCTC GCGCGTGTAGCGTGTCAAGTCGTTTTGAGCTGGAGCGAGACGAGGTGAAC CATAACCTTGACGCCGTTCCTGCTCGCAAAGCATGGACCAAATGCTGCGC CTCCGTTGCACGACAGGGCGATCGGATCGTGAGTGGAGGACTACGACCGA TTGAAGACGGAGGATTATTCCCCCCCGATTTTGTGCGTCATGTATCCACA GCTGAAGCAGCGAAAGGAAACGCTCGACAAGACGCGGCGCCGGGCGACGC AATTAGCCGACTGGAGGGACATGGAAATACGCGGGATTTTCGACAGTGAA GCTAGGCGACGTTTCGACGACAAGCATCTTGATGAGCGGCGCAAGGTCGG GGGAAGCTATTATTTACGTGGCGCACCGGGGGATCGGCGATAGTGTCACT GCGGGATAAGTCTCCGTAGGGGTCATATCAGACCGGTTGTCTTGACTTGC TGGCTACCACAAACTCTTTCGTACGTCGCATCGGCCTAAAGCCATATCCA TCTCATGGTGTGTCTTTTCTTCCATCAATCTCAGCGCGCGTGATTTGTTA ATCAAAGTTTTAGAGGGTTGACCGCGAGTGGTATCTTTAGAAAAGCACCA ATATATAGATAAATGTATCTACAAAAAAGGTGTACTCGTACATACGTACG TCTACGCAGGCAGCGGACGAGAAACGGAAATGGGCGGTAAGCCACGTGAC TCATTCCGGCAAGCCCGAC
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Coding sequence (CDS) from alignment at H-elongata_contig15799:6778..7696-

>mRNA_H-elongata_contig15799.3768.1 ID=mRNA_H-elongata_contig15799.3768.1|Name=mRNA_H-elongata_contig15799.3768.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig15799:6778..7696- (Himanthalia elongata Himel1 dioecious)
ATGCTGGAGACACAGAGGCTGATGCTGAGCCCTCGAGCCCTGCAGCAGGG
CTGGAAGGAAGAGCTAGACGGCAACATCGAGCAGCATCACGGCTGGATCA
CGGAGCGCAAGCTGGAGGCCGTATTCGGCGGGTCTTTACCGGCCAGAGAA
CTCGAGGAGGAGGTACTAATGCTGGAGACACAGAGGCTGATGCTGAGCCC
TCGAGCCCTGCAGCAGGGCTGGAAGGAAGAGCTAGACGGCAACATCGAGC
AGCATCACGGCTGGATCACGGAGCGCAAGCTGGAGGCCGTATTCGGCGGG
TCTTTACCGGCCAGAGAACTCGAGGAGGAGGTACTACAGCGAAAGGAAAC
GCTCGACAAGACGCGGCGCCGGGCGACGCAATTAGCCGACTGGAGGGACA
TGGAAATACGCGGGATTTTCGACAGTGAAGCTAGGCGACGTTTCGACGAC
AAGCATCTTGATGAGCGGCGCAAGCAGCGAAAGGAAACGCTCGACAAGAC
GCGGCGCCGGGCGACGCAATTAGCCGACTGGAGGGACATGGAAATACGCG
GGATTTTCGACAGTGAAGCTAGGCGACGTTTCGACGACAAGCATCTTGAT
GAGCGGCGCAAGGCAGCGGACGAGAAACGGAAATGGGCGGTAAGCCACGT
GACTCATTCCGGCAAGCCCGACGCAGCGGACGAGAAACGGAAATGGGCGG
TAAGCCACGTGACTCATTCCGGCAAGCCCGAC
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