mRNA_H-elongata_contig15794.3766.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig15794.3766.1 vs. uniprot
Match: D8LCE0_ECTSI (Glutamate synthase (NADH/NADPH-dependent), C-terminal part n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCE0_ECTSI) HSP 1 Score: 109 bits (273), Expect = 2.530e-26 Identity = 53/71 (74.65%), Postives = 60/71 (84.51%), Query Frame = 1
Query: 1 QNEFPARCNMGMVALESVETPEDMELLRGFVEEHQKHTGSTVAQALLDDFGTAVTHFVKVYPNDYKRVLAE 213
+ EFPARCNMGMVALE V+TPEDME LRGF++ H HT ST A+ LLDDFGT+VT FVKV P+DYKRVLAE
Sbjct: 1191 EGEFPARCNMGMVALEKVDTPEDMEELRGFIQAHLDHTKSTTAKKLLDDFGTSVTKFVKVMPHDYKRVLAE 1261
BLAST of mRNA_H-elongata_contig15794.3766.1 vs. uniprot
Match: A0A835YLR4_9STRA (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLR4_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 8.850e-21 Identity = 46/71 (64.79%), Postives = 59/71 (83.10%), Query Frame = 1
Query: 1 QNEFPARCNMGMVALESVETPEDMELLRGFVEEHQKHTGSTVAQALLDDFGTAVTHFVKVYPNDYKRVLAE 213
++ FP+RCNMGMVALESV PE+ E LR VEEH K+TGSTVAQ LLD++ ++V+ FVKVYP+DYKRV+ +
Sbjct: 1478 ESAFPSRCNMGMVALESVIDPEESEKLRQHVEEHFKYTGSTVAQRLLDNWSSSVSAFVKVYPHDYKRVIED 1548
BLAST of mRNA_H-elongata_contig15794.3766.1 vs. uniprot
Match: A0A6H5KK65_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK65_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 5.710e-20 Identity = 43/59 (72.88%), Postives = 49/59 (83.05%), Query Frame = 1
Query: 1 QNEFPARCNMGMVALESVETPEDMELLRGFVEEHQKHTGSTVAQALLDDFGTAVTHFVK 177
+ EFPARCNMGMV LE V+TPEDME LRGF++ H HTGST A+ LLDDFGT+VT FVK
Sbjct: 354 EGEFPARCNMGMVGLEKVDTPEDMEELRGFIQAHLDHTGSTTAKKLLDDFGTSVTKFVK 412
BLAST of mRNA_H-elongata_contig15794.3766.1 vs. uniprot
Match: A0A7Y5W280_9CHLR (Glutamate synthase large subunit n=2 Tax=Bacteria TaxID=2 RepID=A0A7Y5W280_9CHLR) HSP 1 Score: 85.5 bits (210), Expect = 8.340e-18 Identity = 39/71 (54.93%), Postives = 55/71 (77.46%), Query Frame = 1
Query: 1 QNEFPARCNMGMVALESVETPEDMELLRGFVEEHQKHTGSTVAQALLDDFGTAVTHFVKVYPNDYKRVLAE 213
+ +F RCN+ MV+LE + PED+EL+ G +E H+++TGSTVA+A+L+D+ T FVKV PNDY+RVLAE
Sbjct: 976 EGDFRNRCNLEMVSLEPLADPEDLELVHGLIERHREYTGSTVARAILEDWQTTSARFVKVMPNDYRRVLAE 1046
BLAST of mRNA_H-elongata_contig15794.3766.1 vs. uniprot
Match: A0A7S3KXA2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KXA2_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 8.390e-18 Identity = 40/71 (56.34%), Postives = 56/71 (78.87%), Query Frame = 1
Query: 1 QNEFPARCNMGMVALESVETPEDMELLRGFVEEHQKHTGSTVAQALLDDFGTAVTHFVKVYPNDYKRVLAE 213
+ +FPARCNMG+V LESV+TPE+ E L G+++EH + TGS+V Q +L+++ + V FVKV P+DYKRVL E
Sbjct: 1509 EGKFPARCNMGLVGLESVDTPEESEELYGYIKEHVEATGSSVGQEMLENWDSRVGSFVKVMPHDYKRVLEE 1579
BLAST of mRNA_H-elongata_contig15794.3766.1 vs. uniprot
Match: A0A7S1H466_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H466_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 5.620e-17 Identity = 36/71 (50.70%), Postives = 52/71 (73.24%), Query Frame = 1
Query: 1 QNEFPARCNMGMVALESVETPEDMELLRGFVEEHQKHTGSTVAQALLDDFGTAVTHFVKVYPNDYKRVLAE 213
+ FPARCNMG+VALE+++T E+ E + +++EH T S+V +A+LD++ V FVKV+P DYKRVL E
Sbjct: 31 EGNFPARCNMGLVALETIDTEEEKEEVYNYIKEHVDFTNSSVGKAMLDNWDEGVRKFVKVFPLDYKRVLME 101
BLAST of mRNA_H-elongata_contig15794.3766.1 vs. uniprot
Match: B7GAZ5_PHATC (Ferredoxin-dependent glutamate synthase, fusion of large and small subunits n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GAZ5_PHATC) HSP 1 Score: 81.6 bits (200), Expect = 1.890e-16 Identity = 36/68 (52.94%), Postives = 52/68 (76.47%), Query Frame = 1
Query: 10 FPARCNMGMVALESVETPEDMELLRGFVEEHQKHTGSTVAQALLDDFGTAVTHFVKVYPNDYKRVLAE 213
FPARCNMG+V LE+++TPE+ E + +++EH + TGS+ Q +LD++ V FVKV+P+DYKRVL E
Sbjct: 1515 FPARCNMGLVGLETIDTPEESEEVHSYIKEHVEMTGSSTGQKMLDNWENEVGRFVKVFPHDYKRVLME 1582
BLAST of mRNA_H-elongata_contig15794.3766.1 vs. uniprot
Match: A0A7S2EMQ3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EMQ3_TRICV) HSP 1 Score: 78.6 bits (192), Expect = 3.020e-16 Identity = 35/68 (51.47%), Postives = 52/68 (76.47%), Query Frame = 1
Query: 10 FPARCNMGMVALESVETPEDMELLRGFVEEHQKHTGSTVAQALLDDFGTAVTHFVKVYPNDYKRVLAE 213
FP +CNMG+VALE+++T E+ + + +++EH +TGSTV Q +L+D+ + V FVKV P+DYKRVL E
Sbjct: 140 FPEKCNMGLVALETIDTEEEKQAVFDYIKEHVDYTGSTVGQGMLEDWDSRVGKFVKVMPHDYKRVLLE 207
BLAST of mRNA_H-elongata_contig15794.3766.1 vs. uniprot
Match: A0A6U4IAI1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4IAI1_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 3.300e-16 Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = 1
Query: 1 QNEFPARCNMGMVALESVETPEDMELLRGFVEEHQKHTGSTVAQALLDDFGTAVTHFVKVYPNDYKRVLAE 213
+ FP+RCNMGMV LE VET ++ ELLR ++EEH++ TGS A LL+++ + FVKV P DYKRVL E
Sbjct: 393 EGRFPSRCNMGMVELERVETADEAELLRSYIEEHKERTGSERASELLENWADELPCFVKVMPTDYKRVLQE 463
BLAST of mRNA_H-elongata_contig15794.3766.1 vs. uniprot
Match: A0A7S0NWY0_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NWY0_9EUKA) HSP 1 Score: 74.7 bits (182), Expect = 1.830e-15 Identity = 35/68 (51.47%), Postives = 49/68 (72.06%), Query Frame = 1
Query: 10 FPARCNMGMVALESVETPEDMELLRGFVEEHQKHTGSTVAQALLDDFGTAVTHFVKVYPNDYKRVLAE 213
F +CNM MVALE V E++E L+G+++EH TGS VA +L+ + ++HFVKV+P+DYKRVL E
Sbjct: 58 FAGKCNMEMVALEVVIDEEEVETLKGYLQEHADRTGSAVAVGMLEQWPAPLSHFVKVFPHDYKRVLIE 125 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15794.3766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15794.3766.1 >prot_H-elongata_contig15794.3766.1 ID=prot_H-elongata_contig15794.3766.1|Name=mRNA_H-elongata_contig15794.3766.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp MGMVALESVETPEDMELLRGFVEEHQKHTGSTVAQALLDDFGTAVTHFVKback to top mRNA from alignment at H-elongata_contig15794:6701..7290- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig15794.3766.1 ID=mRNA_H-elongata_contig15794.3766.1|Name=mRNA_H-elongata_contig15794.3766.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=590bp|location=Sequence derived from alignment at H-elongata_contig15794:6701..7290- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig15794:6701..7290- >mRNA_H-elongata_contig15794.3766.1 ID=mRNA_H-elongata_contig15794.3766.1|Name=mRNA_H-elongata_contig15794.3766.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig15794:6701..7290- (Himanthalia elongata Himel1 dioecious)back to top |