mRNA_H-elongata_contig15794.3766.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15794.3766.1
Unique NamemRNA_H-elongata_contig15794.3766.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15794.3766.1 vs. uniprot
Match: D8LCE0_ECTSI (Glutamate synthase (NADH/NADPH-dependent), C-terminal part n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCE0_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 2.530e-26
Identity = 53/71 (74.65%), Postives = 60/71 (84.51%), Query Frame = 1
Query:    1 QNEFPARCNMGMVALESVETPEDMELLRGFVEEHQKHTGSTVAQALLDDFGTAVTHFVKVYPNDYKRVLAE 213
            + EFPARCNMGMVALE V+TPEDME LRGF++ H  HT ST A+ LLDDFGT+VT FVKV P+DYKRVLAE
Sbjct: 1191 EGEFPARCNMGMVALEKVDTPEDMEELRGFIQAHLDHTKSTTAKKLLDDFGTSVTKFVKVMPHDYKRVLAE 1261          
BLAST of mRNA_H-elongata_contig15794.3766.1 vs. uniprot
Match: A0A835YLR4_9STRA (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLR4_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 8.850e-21
Identity = 46/71 (64.79%), Postives = 59/71 (83.10%), Query Frame = 1
Query:    1 QNEFPARCNMGMVALESVETPEDMELLRGFVEEHQKHTGSTVAQALLDDFGTAVTHFVKVYPNDYKRVLAE 213
            ++ FP+RCNMGMVALESV  PE+ E LR  VEEH K+TGSTVAQ LLD++ ++V+ FVKVYP+DYKRV+ +
Sbjct: 1478 ESAFPSRCNMGMVALESVIDPEESEKLRQHVEEHFKYTGSTVAQRLLDNWSSSVSAFVKVYPHDYKRVIED 1548          
BLAST of mRNA_H-elongata_contig15794.3766.1 vs. uniprot
Match: A0A6H5KK65_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK65_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 5.710e-20
Identity = 43/59 (72.88%), Postives = 49/59 (83.05%), Query Frame = 1
Query:    1 QNEFPARCNMGMVALESVETPEDMELLRGFVEEHQKHTGSTVAQALLDDFGTAVTHFVK 177
            + EFPARCNMGMV LE V+TPEDME LRGF++ H  HTGST A+ LLDDFGT+VT FVK
Sbjct:  354 EGEFPARCNMGMVGLEKVDTPEDMEELRGFIQAHLDHTGSTTAKKLLDDFGTSVTKFVK 412          
BLAST of mRNA_H-elongata_contig15794.3766.1 vs. uniprot
Match: A0A7Y5W280_9CHLR (Glutamate synthase large subunit n=2 Tax=Bacteria TaxID=2 RepID=A0A7Y5W280_9CHLR)

HSP 1 Score: 85.5 bits (210), Expect = 8.340e-18
Identity = 39/71 (54.93%), Postives = 55/71 (77.46%), Query Frame = 1
Query:    1 QNEFPARCNMGMVALESVETPEDMELLRGFVEEHQKHTGSTVAQALLDDFGTAVTHFVKVYPNDYKRVLAE 213
            + +F  RCN+ MV+LE +  PED+EL+ G +E H+++TGSTVA+A+L+D+ T    FVKV PNDY+RVLAE
Sbjct:  976 EGDFRNRCNLEMVSLEPLADPEDLELVHGLIERHREYTGSTVARAILEDWQTTSARFVKVMPNDYRRVLAE 1046          
BLAST of mRNA_H-elongata_contig15794.3766.1 vs. uniprot
Match: A0A7S3KXA2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KXA2_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 8.390e-18
Identity = 40/71 (56.34%), Postives = 56/71 (78.87%), Query Frame = 1
Query:    1 QNEFPARCNMGMVALESVETPEDMELLRGFVEEHQKHTGSTVAQALLDDFGTAVTHFVKVYPNDYKRVLAE 213
            + +FPARCNMG+V LESV+TPE+ E L G+++EH + TGS+V Q +L+++ + V  FVKV P+DYKRVL E
Sbjct: 1509 EGKFPARCNMGLVGLESVDTPEESEELYGYIKEHVEATGSSVGQEMLENWDSRVGSFVKVMPHDYKRVLEE 1579          
BLAST of mRNA_H-elongata_contig15794.3766.1 vs. uniprot
Match: A0A7S1H466_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H466_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 5.620e-17
Identity = 36/71 (50.70%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    1 QNEFPARCNMGMVALESVETPEDMELLRGFVEEHQKHTGSTVAQALLDDFGTAVTHFVKVYPNDYKRVLAE 213
            +  FPARCNMG+VALE+++T E+ E +  +++EH   T S+V +A+LD++   V  FVKV+P DYKRVL E
Sbjct:   31 EGNFPARCNMGLVALETIDTEEEKEEVYNYIKEHVDFTNSSVGKAMLDNWDEGVRKFVKVFPLDYKRVLME 101          
BLAST of mRNA_H-elongata_contig15794.3766.1 vs. uniprot
Match: B7GAZ5_PHATC (Ferredoxin-dependent glutamate synthase, fusion of large and small subunits n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GAZ5_PHATC)

HSP 1 Score: 81.6 bits (200), Expect = 1.890e-16
Identity = 36/68 (52.94%), Postives = 52/68 (76.47%), Query Frame = 1
Query:   10 FPARCNMGMVALESVETPEDMELLRGFVEEHQKHTGSTVAQALLDDFGTAVTHFVKVYPNDYKRVLAE 213
            FPARCNMG+V LE+++TPE+ E +  +++EH + TGS+  Q +LD++   V  FVKV+P+DYKRVL E
Sbjct: 1515 FPARCNMGLVGLETIDTPEESEEVHSYIKEHVEMTGSSTGQKMLDNWENEVGRFVKVFPHDYKRVLME 1582          
BLAST of mRNA_H-elongata_contig15794.3766.1 vs. uniprot
Match: A0A7S2EMQ3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EMQ3_TRICV)

HSP 1 Score: 78.6 bits (192), Expect = 3.020e-16
Identity = 35/68 (51.47%), Postives = 52/68 (76.47%), Query Frame = 1
Query:   10 FPARCNMGMVALESVETPEDMELLRGFVEEHQKHTGSTVAQALLDDFGTAVTHFVKVYPNDYKRVLAE 213
            FP +CNMG+VALE+++T E+ + +  +++EH  +TGSTV Q +L+D+ + V  FVKV P+DYKRVL E
Sbjct:  140 FPEKCNMGLVALETIDTEEEKQAVFDYIKEHVDYTGSTVGQGMLEDWDSRVGKFVKVMPHDYKRVLLE 207          
BLAST of mRNA_H-elongata_contig15794.3766.1 vs. uniprot
Match: A0A6U4IAI1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4IAI1_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.300e-16
Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    1 QNEFPARCNMGMVALESVETPEDMELLRGFVEEHQKHTGSTVAQALLDDFGTAVTHFVKVYPNDYKRVLAE 213
            +  FP+RCNMGMV LE VET ++ ELLR ++EEH++ TGS  A  LL+++   +  FVKV P DYKRVL E
Sbjct:  393 EGRFPSRCNMGMVELERVETADEAELLRSYIEEHKERTGSERASELLENWADELPCFVKVMPTDYKRVLQE 463          
BLAST of mRNA_H-elongata_contig15794.3766.1 vs. uniprot
Match: A0A7S0NWY0_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NWY0_9EUKA)

HSP 1 Score: 74.7 bits (182), Expect = 1.830e-15
Identity = 35/68 (51.47%), Postives = 49/68 (72.06%), Query Frame = 1
Query:   10 FPARCNMGMVALESVETPEDMELLRGFVEEHQKHTGSTVAQALLDDFGTAVTHFVKVYPNDYKRVLAE 213
            F  +CNM MVALE V   E++E L+G+++EH   TGS VA  +L+ +   ++HFVKV+P+DYKRVL E
Sbjct:   58 FAGKCNMEMVALEVVIDEEEVETLKGYLQEHADRTGSAVAVGMLEQWPAPLSHFVKVFPHDYKRVLIE 125          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15794.3766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCE0_ECTSI2.530e-2674.65Glutamate synthase (NADH/NADPH-dependent), C-termi... [more]
A0A835YLR4_9STRA8.850e-2164.79Glutamine amidotransferase type-2 domain-containin... [more]
A0A6H5KK65_9PHAE5.710e-2072.88Reverse transcriptase domain-containing protein n=... [more]
A0A7Y5W280_9CHLR8.340e-1854.93Glutamate synthase large subunit n=2 Tax=Bacteria ... [more]
A0A7S3KXA2_9STRA8.390e-1856.34Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S1H466_9STRA5.620e-1750.70Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
B7GAZ5_PHATC1.890e-1652.94Ferredoxin-dependent glutamate synthase, fusion of... [more]
A0A7S2EMQ3_TRICV3.020e-1651.47Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A6U4IAI1_9STRA3.300e-1654.93Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S0NWY0_9EUKA1.830e-1551.47Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15794contigH-elongata_contig15794:6701..7290 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue1.2e-17
Seed eggNOG ortholog2880.D8LCE0
Preferred nameGLT1
KEGG rclassRC00006,RC00010,RC02799
KEGG koko:K00264,ko:K17792
KEGG TC3.A.8.1
KEGG ReactionR00093,R00114,R00248
KEGG Pathwayko00250,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00910,map01100,map01110,map01120,map01130,map01230
GOsGO:0001505,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006541,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009719,GO:0009725,GO:0009735,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0015930,GO:0016040,GO:0016053,GO:0016491,GO:0016638,GO:0016639,GO:0017144,GO:0019676,GO:0019740,GO:0019752,GO:0030447,GO:0032502,GO:0036267,GO:0040007,GO:0042133,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045181,GO:0046394,GO:0046686,GO:0048589,GO:0050896,GO:0055114,GO:0060359,GO:0065007,GO:0065008,GO:0070783,GO:0071704,GO:0097054,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901698
EggNOG free text desc.L-glutamate biosynthetic process
EggNOG OGsCOG0069@1,KOG0399@2759
EC1.4.1.13,1.4.1.14
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko03029
Hectar predicted targeting categoryother localisation
Exons2
Model size213
Cds size186
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15794.3766.1prot_H-elongata_contig15794.3766.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15794 6701..7263 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929931.3473282-CDS-H-elongata_contig15794:6700..67361622929931.3473282-CDS-H-elongata_contig15794:6700..6736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15794 6701..6736 -
1691679212.6397367-CDS-H-elongata_contig15794:6700..67361691679212.6397367-CDS-H-elongata_contig15794:6700..6736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15794 6701..6736 -
1622929931.3631036-CDS-H-elongata_contig15794:7113..72631622929931.3631036-CDS-H-elongata_contig15794:7113..7263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15794 7114..7263 -
1691679212.6528616-CDS-H-elongata_contig15794:7113..72631691679212.6528616-CDS-H-elongata_contig15794:7113..7263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15794 7114..7263 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929931.3812194-UTR-H-elongata_contig15794:7263..72901622929931.3812194-UTR-H-elongata_contig15794:7263..7290Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15794 7264..7290 -
1691679212.660864-UTR-H-elongata_contig15794:7263..72901691679212.660864-UTR-H-elongata_contig15794:7263..7290Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15794 7264..7290 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15794.3766.1

>prot_H-elongata_contig15794.3766.1 ID=prot_H-elongata_contig15794.3766.1|Name=mRNA_H-elongata_contig15794.3766.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
MGMVALESVETPEDMELLRGFVEEHQKHTGSTVAQALLDDFGTAVTHFVK
VYPNDYKRVLAE
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mRNA from alignment at H-elongata_contig15794:6701..7290-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15794.3766.1 ID=mRNA_H-elongata_contig15794.3766.1|Name=mRNA_H-elongata_contig15794.3766.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=590bp|location=Sequence derived from alignment at H-elongata_contig15794:6701..7290- (Himanthalia elongata Himel1 dioecious)
CAGAACGAGTTCCCCGCGCGATGCAACATGGGAATGGTCGCGCTAGAAAG CGTGGAGACCCCGGAGGACATGGAGCTATTGCGAGGCTTCGTCGAAGAGC ACCAGAAGCACACGGGCTCGACCGTCGCCCAGGCGTTGCTGGACGACTTC GGTACGGCGGTGACTCACTTCGTCAAGGTGCGGAAAAGCAACAGAGAGGA ACAAGCCGCGGGGGTGCTTGAGGTTGAAGCTACAGTCGGCTTCGGCGGGG TTCGTGCGCACGCGCGCGCGCGCGTCCCCCTATCGAGTTGTTCGAAGCTT GCTCTCGAGCATCCTGTCACACCATTGAAAGCGATGGTCGTTGAACGCAA CATAGTTCCGAGTGCCAAAAATCCATAGATTTGCTAGTTTAAATAAAAAA ATCATTTGATGGAAGGATGCGAGAAACCCCGGACCCAAATATTTGCTATA AAACTGCACGTCACCCCAATCGCGCGAGCATCATCGCCCTTAATCCCGCC TCCCTCTCACCCCCTCCACCCCCGGCGGTGGACCTTCCCGGCGGGTCGTG ACAGGTCTACCCGAACGACTACAAGCGAGTGCTCGCGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig15794:6701..7290-

>mRNA_H-elongata_contig15794.3766.1 ID=mRNA_H-elongata_contig15794.3766.1|Name=mRNA_H-elongata_contig15794.3766.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig15794:6701..7290- (Himanthalia elongata Himel1 dioecious)
ATGGGAATGGTCGCGCTAGAAAGCGTGGAGACCCCGGAGGACATGGAGCT
ATTGCGAGGCTTCGTCGAAGAGCACCAGAAGCACACGGGCTCGACCGTCG
CCCAGGCGTTGCTGGACGACTTCGGTACGGCGGTGACTCACTTCGTCAAG
ATGGGAATGGTCGCGCTAGAAAGCGTGGAGACCCCGGAGGACATGGAGCT
ATTGCGAGGCTTCGTCGAAGAGCACCAGAAGCACACGGGCTCGACCGTCG
CCCAGGCGTTGCTGGACGACTTCGGTACGGCGGTGACTCACTTCGTCAAG
GTCTACCCGAACGACTACAAGCGAGTGCTCGCGGAGGTCTACCCGAACGA
CTACAAGCGAGTGCTCGCGGAG
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