mRNA_H-elongata_contig156501.3684.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig156501.3684.1
Unique NamemRNA_H-elongata_contig156501.3684.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig156501.3684.1 vs. uniprot
Match: PSBL_PHATC (Photosystem II reaction center protein L n=87 Tax=cellular organisms TaxID=131567 RepID=PSBL_PHATC)

HSP 1 Score: 77.0 bits (188), Expect = 4.770e-18
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 MTGPNPNKQPVELNRTSLYWGLLLIFVLAVLFSSYFFN 114
            MTGPNPNKQ VELNRTSLYWGLLLIFVLAVLFSSYFFN
Sbjct:    1 MTGPNPNKQAVELNRTSLYWGLLLIFVLAVLFSSYFFN 38
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BLAST of mRNA_H-elongata_contig156501.3684.1 vs. uniprot
Match: PSBL_CYAM1 (Photosystem II reaction center protein L n=7 Tax=Eukaryota TaxID=2759 RepID=PSBL_CYAM1)

HSP 1 Score: 76.3 bits (186), Expect = 9.630e-18
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 MTGPNPNKQPVELNRTSLYWGLLLIFVLAVLFSSYFFN 114
            M+GPNPNKQPVELNRTSLYWGLL IFVLA+LFSSYFFN
Sbjct:    1 MSGPNPNKQPVELNRTSLYWGLLCIFVLAILFSSYFFN 38
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BLAST of mRNA_H-elongata_contig156501.3684.1 vs. uniprot
Match: PSBL_GRATL (Photosystem II reaction center protein L n=137 Tax=Florideophyceae TaxID=2806 RepID=PSBL_GRATL)

HSP 1 Score: 75.9 bits (185), Expect = 1.370e-17
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:    1 MTGPNPNKQPVELNRTSLYWGLLLIFVLAVLFSSYFFN 114
            M+GPNPNK+PVELNRTSL+WGLLLIFVLAVLFSSYFFN
Sbjct:    1 MSGPNPNKEPVELNRTSLFWGLLLIFVLAVLFSSYFFN 38
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BLAST of mRNA_H-elongata_contig156501.3684.1 vs. uniprot
Match: A0A516ZAF7_9STRA (Photosystem II reaction center protein L n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A516ZAF7_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.950e-17
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:    1 MTGPNPNKQPVELNRTSLYWGLLLIFVLAVLFSSYFFN 114
            M+GPNPN+QPVEL+RTSLYWGLLLIFVLAVLFSSYFFN
Sbjct:    1 MSGPNPNRQPVELSRTSLYWGLLLIFVLAVLFSSYFFN 38
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BLAST of mRNA_H-elongata_contig156501.3684.1 vs. uniprot
Match: PSBL_EMIHU (Photosystem II reaction center protein L n=5 Tax=cellular organisms TaxID=131567 RepID=PSBL_EMIHU)

HSP 1 Score: 75.1 bits (183), Expect = 2.770e-17
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 MTGPNPNKQPVELNRTSLYWGLLLIFVLAVLFSSYFFN 114
            M+ PNPNKQPVELNRTSLYWGLLL+FVLAVLFSSYFFN
Sbjct:    1 MSAPNPNKQPVELNRTSLYWGLLLMFVLAVLFSSYFFN 38
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BLAST of mRNA_H-elongata_contig156501.3684.1 vs. uniprot
Match: C6KIX9_9STRA (Photosystem II reaction center protein L n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=C6KIX9_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.770e-17
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:    1 MTGPNPNKQPVELNRTSLYWGLLLIFVLAVLFSSYFFN 114
            MTGPNPN+QPVELNRTSLY+GLLLIFVLAVLFSSYFFN
Sbjct:    1 MTGPNPNRQPVELNRTSLYFGLLLIFVLAVLFSSYFFN 38
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BLAST of mRNA_H-elongata_contig156501.3684.1 vs. uniprot
Match: D4NY75_GALSU (Photosystem II reaction center protein L n=15 Tax=Eukaryota TaxID=2759 RepID=D4NY75_GALSU)

HSP 1 Score: 74.3 bits (181), Expect = 5.590e-17
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 MTGPNPNKQPVELNRTSLYWGLLLIFVLAVLFSSYFFN 114
            MTG NPNKQPVELNRTSL+WGLLLIFVLA+LFSSYFFN
Sbjct:    1 MTGSNPNKQPVELNRTSLFWGLLLIFVLALLFSSYFFN 38
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BLAST of mRNA_H-elongata_contig156501.3684.1 vs. uniprot
Match: A0A8K1YUB7_9FLOR (Photosystem II protein L n=2 Tax=Kumanoa TaxID=644269 RepID=A0A8K1YUB7_9FLOR)

HSP 1 Score: 74.3 bits (181), Expect = 1.170e-16
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 MTGPNPNKQPVELNRTSLYWGLLLIFVLAVLFSSYFFN 114
            M+GPNPNK PVELNRTSL+WGLLLIFVLAVLFSSYFFN
Sbjct:   33 MSGPNPNKVPVELNRTSLFWGLLLIFVLAVLFSSYFFN 70
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BLAST of mRNA_H-elongata_contig156501.3684.1 vs. uniprot
Match: PSBL_CYACA (Photosystem II reaction center protein L n=67 Tax=Eukaryota TaxID=2759 RepID=PSBL_CYACA)

HSP 1 Score: 73.2 bits (178), Expect = 1.610e-16
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 MTGPNPNKQPVELNRTSLYWGLLLIFVLAVLFSSYFFN 114
            M+G NPNKQPVELNRTSL+WGLLLIFVLAVLFSSYFFN
Sbjct:    1 MSGINPNKQPVELNRTSLFWGLLLIFVLAVLFSSYFFN 38
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BLAST of mRNA_H-elongata_contig156501.3684.1 vs. uniprot
Match: PSBL_PHYPA (Photosystem II reaction center protein L n=237 Tax=Embryophyta TaxID=3193 RepID=PSBL_PHYPA)

HSP 1 Score: 72.8 bits (177), Expect = 2.280e-16
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 MTGPNPNKQPVELNRTSLYWGLLLIFVLAVLFSSYFFN 114
            MT PNPNKQ VELNRTSLYWGLLLIFVLAVLFS+YFFN
Sbjct:    1 MTQPNPNKQSVELNRTSLYWGLLLIFVLAVLFSNYFFN 38
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156501.3684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PSBL_PHATC4.770e-1897.37Photosystem II reaction center protein L n=87 Tax=... [more]
PSBL_CYAM19.630e-1892.11Photosystem II reaction center protein L n=7 Tax=E... [more]
PSBL_GRATL1.370e-1792.11Photosystem II reaction center protein L n=137 Tax... [more]
A0A516ZAF7_9STRA1.950e-1792.11Photosystem II reaction center protein L n=2 Tax=D... [more]
PSBL_EMIHU2.770e-1792.11Photosystem II reaction center protein L n=5 Tax=c... [more]
C6KIX9_9STRA2.770e-1794.74Photosystem II reaction center protein L n=1 Tax=A... [more]
D4NY75_GALSU5.590e-1792.11Photosystem II reaction center protein L n=15 Tax=... [more]
A0A8K1YUB7_9FLOR1.170e-1692.11Photosystem II protein L n=2 Tax=Kumanoa TaxID=644... [more]
PSBL_CYACA1.610e-1692.11Photosystem II reaction center protein L n=67 Tax=... [more]
PSBL_PHYPA2.280e-1692.11Photosystem II reaction center protein L n=237 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig156501contigH-elongata_contig156501:1330..1446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue1.3e-12
Seed eggNOG ortholog159749.E7BWF1
Preferred namepsbL
KEGG koko:K02713
KEGG Pathwayko00195,ko01100,map00195,map01100
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. This subunit is found at the monomer-monomer interface and is required for correct PSII assembly and or dimerization
EggNOG OGs2EGUI@1,2SFCU@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Hectar predicted targeting categorysignal anchor
Exons1
Model size117
Cds size117
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929923.4814236-CDS-H-elongata_contig156501:1329..14461622929923.4814236-CDS-H-elongata_contig156501:1329..1446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156501 1330..1446 -
1691679210.0213394-CDS-H-elongata_contig156501:1329..14461691679210.0213394-CDS-H-elongata_contig156501:1329..1446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156501 1330..1446 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig156501.3684.1prot_H-elongata_contig156501.3684.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig156501 1330..1446 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig156501.3684.1

>prot_H-elongata_contig156501.3684.1 ID=prot_H-elongata_contig156501.3684.1|Name=mRNA_H-elongata_contig156501.3684.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=39bp
MTGPNPNKQPVELNRTSLYWGLLLIFVLAVLFSSYFFN*
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mRNA from alignment at H-elongata_contig156501:1330..1446-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig156501.3684.1 ID=mRNA_H-elongata_contig156501.3684.1|Name=mRNA_H-elongata_contig156501.3684.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=117bp|location=Sequence derived from alignment at H-elongata_contig156501:1330..1446- (Himanthalia elongata Himel1 dioecious)
ATGACAGGTCCAAATCCTAATAAGCAACCCGTCGAATTAAACCGGACTTC
TTTGTACTGGGGTTTATTGTTAATTTTTGTGTTGGCTGTACTTTTTTCTA
GTTATTTCTTTAATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig156501:1330..1446-

>mRNA_H-elongata_contig156501.3684.1 ID=mRNA_H-elongata_contig156501.3684.1|Name=mRNA_H-elongata_contig156501.3684.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=234bp|location=Sequence derived from alignment at H-elongata_contig156501:1330..1446- (Himanthalia elongata Himel1 dioecious)
ATGACAGGTCCAAATCCTAATAAGCAACCCGTCGAATTAAACCGGACTTC
TTTGTACTGGGGTTTATTGTTAATTTTTGTGTTGGCTGTACTTTTTTCTA
GTTATTTCTTTAATTAAATGACAGGTCCAAATCCTAATAAGCAACCCGTC
GAATTAAACCGGACTTCTTTGTACTGGGGTTTATTGTTAATTTTTGTGTT
GGCTGTACTTTTTTCTAGTTATTTCTTTAATTAA
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