mRNA_H-elongata_contig156034.3659.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig156034.3659.1
Unique NamemRNA_H-elongata_contig156034.3659.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig156034.3659.1 vs. uniprot
Match: D8LP21_ECTSI (Methyl transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP21_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 1.900e-59
Identity = 99/167 (59.28%), Postives = 123/167 (73.65%), Query Frame = 1
Query:    1 LFLAQRDYEIGRRPRKIILLDRDIRKAVECTASLPDDAAAVIEHHEARQKILRLYPKNPSPLPKESFGAVLVFNYLHRPLFPNLCDAVKPGGLVLYKTFTWEHPSIALRPSNPAFLLRPRELK-QLFEGWEVLEFIEGIE--EKSRGDDDGGTVRRAVSSIVCRKQV 492
            LF+AQ D + GRR RK++LLDR+I +AV CTA LP+    ++ H E   +      +NPSPLP+E+FGAVLVFNYLHRPL  NL D+VKPGGLVLYKTFTW+HPS+ +RPSNPAFLL P ELK ++F GWEV++F EG+   E +   +  G  R AVSSIVCRK V
Sbjct:   34 LFVAQSDQDKGRRDRKVVLLDRNIGEAVRCTADLPEATRELVVHQETDLET----EENPSPLPRETFGAVLVFNYLHRPLVANLRDSVKPGGLVLYKTFTWQHPSVGVRPSNPAFLLGPGELKDEMFAGWEVIDFFEGVVVVEGNASAEGSGVRRVAVSSIVCRKPV 196          
BLAST of mRNA_H-elongata_contig156034.3659.1 vs. uniprot
Match: A0A6H5JPT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPT9_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 1.090e-54
Identity = 101/192 (52.60%), Postives = 124/192 (64.58%), Query Frame = 1
Query:    1 LFLAQRDYEIGRRPRKIILLDRDIRKAVECTASLPDDAAAVIEHHEAR----------QKILRLY---------------PKNPSPLPKESFGAVLVFNYLHRPLFPNLCDAVKPGGLVLYKTFTWEHPSIALRPSNPAFLLRPRELK-QLFEGWEVLEFIEGIE--EKSRGDDDGGTVRRAVSSIVCRKQV 492
            LF+AQ D + GRR RK++LLDR+I +A   TA LP+    ++ H E            Q    LY                +NPSPLP+E+FGAVLVFNYLHRPL  NL D+V+PGGLVLYKTFTW+HPS+ +RPSNPAFLL P ELK ++F GWEV++F EG+   E +   D GG  R AVSSIVCRK V
Sbjct:   23 LFVAQSDQDKGRRNRKVVLLDRNIGEAARRTAELPEATRELVVHQEVALVWFGTEVDSQGFPPLYFSPCLYLLAQTDLETEENPSPLPEEAFGAVLVFNYLHRPLVANLRDSVQPGGLVLYKTFTWQHPSVGVRPSNPAFLLGPGELKDEMFAGWEVIDFFEGVVVVEGTASADGGGVRRAAVSSIVCRKPV 214          
BLAST of mRNA_H-elongata_contig156034.3659.1 vs. uniprot
Match: A0A7V0QL57_9DELT (Class I SAM-dependent methyltransferase n=2 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V0QL57_9DELT)

HSP 1 Score: 105 bits (262), Expect = 2.500e-25
Identity = 54/103 (52.43%), Postives = 71/103 (68.93%), Query Frame = 1
Query:  178 SPLPKESFGAVLVFNYLHRPLFPNLCDAVKPGGLVLYKTFTWEHPSIALRPSNPAFLLRPRELKQLFEGWEVLEFIEGIEEKSRGDDDGGTVRRAVSSIVCRK 486
            SPLP+E FG +LVF YL+R LFP +  A+KPGGL++Y+TFT + P    +P NP+FLLRP EL+ +F  W VL +IEGI +    D D     RAV+ IVC+K
Sbjct:  101 SPLPQEHFGVILVFRYLYRRLFPEIRAALKPGGLLIYETFTTQQPQFG-KPKNPSFLLRPGELRMVFGDWRVLHYIEGIVK----DPD-----RAVAQIVCKK 193          
BLAST of mRNA_H-elongata_contig156034.3659.1 vs. uniprot
Match: UPI000838E8CE (methyltransferase domain-containing protein n=1 Tax=Thalassotalea crassostreae TaxID=1763536 RepID=UPI000838E8CE)

HSP 1 Score: 104 bits (259), Expect = 4.000e-25
Identity = 49/103 (47.57%), Postives = 72/103 (69.90%), Query Frame = 1
Query:  178 SPLPKESFGAVLVFNYLHRPLFPNLCDAVKPGGLVLYKTFTWEHPSIALRPSNPAFLLRPRELKQLFEGWEVLEFIEGIEEKSRGDDDGGTVRRAVSSIVCRK 486
            SPL  +SF ++LVFNYLHRPL  ++  A++PGGL++Y+TFT E P    RP+NP FLL+P+EL + F+ W+VL + EGI +K    +     ++A++ IV RK
Sbjct:   74 SPLTGKSFSSILVFNYLHRPLMASIKQAIQPGGLIVYETFTTEQPQFG-RPTNPKFLLKPKELLEHFDDWQVLHYFEGIVDKEDSSN-----KKAIAQIVARK 170          
BLAST of mRNA_H-elongata_contig156034.3659.1 vs. uniprot
Match: UPI0020108204 (class I SAM-dependent methyltransferase n=1 Tax=Shewanella kaireitica TaxID=212021 RepID=UPI0020108204)

HSP 1 Score: 103 bits (256), Expect = 1.350e-24
Identity = 54/122 (44.26%), Postives = 73/122 (59.84%), Query Frame = 1
Query:   49 IILLDRDIRKAVECTASLPDDAAAVIEHHEARQKILRLYPKNPSPLPKESFGAVLVFNYLHRPLFPNLCDAVKPGGLVLYKTFTWEHPSIALRPSNPAFLLRPRELKQLFEGWEVLEFIEGI 414
            +  LDRD+    +   +  DD   ++E          L  +NP  LP  S+ AV+VFNYLHRPLFP + DA+KPGGL++Y+TFT +  +I  RP NP FLL+  ELK LF  W  L + EG+
Sbjct:   51 VTFLDRDLS---QLEPNQTDDRVKLLEWD--------LETENPPTLPSNSYDAVIVFNYLHRPLFPQIIDAIKPGGLIIYETFTRQQATIG-RPRNPNFLLKETELKALFANWRCLHYSEGL 160          
BLAST of mRNA_H-elongata_contig156034.3659.1 vs. uniprot
Match: M5PUH0_DESAF (Ribosomal protein L11 methylase n=3 Tax=Desulfocurvibacter africanus TaxID=873 RepID=M5PUH0_DESAF)

HSP 1 Score: 103 bits (256), Expect = 1.420e-24
Identity = 49/103 (47.57%), Postives = 70/103 (67.96%), Query Frame = 1
Query:  178 SPLPKESFGAVLVFNYLHRPLFPNLCDAVKPGGLVLYKTFTWEHPSIALRPSNPAFLLRPRELKQLFEGWEVLEFIEGIEEKSRGDDDGGTVRRAVSSIVCRK 486
            +PLP E++G ++VF YLHRPLFP++  A+KPGGL+ Y+T+T + P    +P+NP FLLRPREL++ F G++++   EGI E            RA + IVCRK
Sbjct:   83 NPLPAENYGGIIVFRYLHRPLFPSIRRALKPGGLLAYETYTLDQPRFG-KPTNPDFLLRPRELREAFSGFKIIHAFEGILENPT---------RAAAQIVCRK 175          
BLAST of mRNA_H-elongata_contig156034.3659.1 vs. uniprot
Match: A0A6H1U8T0_9GAMM (Class I SAM-dependent methyltransferase n=1 Tax=Ferrimonas lipolytica TaxID=2724191 RepID=A0A6H1U8T0_9GAMM)

HSP 1 Score: 100 bits (249), Expect = 1.500e-23
Identity = 47/78 (60.26%), Postives = 58/78 (74.36%), Query Frame = 1
Query:  178 SPLPKESFGAVLVFNYLHRPLFPNLCDAVKPGGLVLYKTFTWEHPSIALRPSNPAFLLRPRELKQLFEGWEVLEFIEG 411
            +P   + F AV+ FNYLHR LFP L DAVKPGGLV+Y+TFT +   I  RPSNPAFLL+P ELKQ F  W++L ++EG
Sbjct:   83 NPFAGKQFAAVIGFNYLHRELFPWLIDAVKPGGLVIYETFTIKQAEIG-RPSNPAFLLKPNELKQFFASWQILHYVEG 159          
BLAST of mRNA_H-elongata_contig156034.3659.1 vs. uniprot
Match: UPI000970308D (methyltransferase domain-containing protein n=1 Tax=Shewanella sp. UCD-KL12 TaxID=1917163 RepID=UPI000970308D)

HSP 1 Score: 98.6 bits (244), Expect = 7.780e-23
Identity = 56/122 (45.90%), Postives = 74/122 (60.66%), Query Frame = 1
Query:   46 KIILLDRDIRKAVECTASLPDDAAAVIEHHEARQKILRLYPKNPSPLPKESFGAVLVFNYLHRPLFPNLCDAVKPGGLVLYKTFTWEHPSIALRPSNPAFLLRPRELKQLFEGWEVLEFIEG 411
            KI  LDRD+       + L  DA+A    H+  +  L L P     LPKE +  +LVFNYLHRPLFP +  A+KPGG+++Y+TF  +   I  RP NP FLL+  ELK LF+ WE L++ EG
Sbjct:   48 KITFLDRDL-------SQLERDASA----HQYLEWDLELEPI--PQLPKEQYDIILVFNYLHRPLFPQIAAALKPGGIIVYETFIEKQAEIG-RPRNPDFLLKTNELKSLFDKWECLQYFEG 155          
BLAST of mRNA_H-elongata_contig156034.3659.1 vs. uniprot
Match: A0A3S4P1C2_SHEPU (Tellurite resistance protein TehB homolog n=14 Tax=Shewanella TaxID=22 RepID=A0A3S4P1C2_SHEPU)

HSP 1 Score: 98.2 bits (243), Expect = 1.040e-22
Identity = 54/125 (43.20%), Postives = 72/125 (57.60%), Query Frame = 1
Query:  112 AAAVIEHHEARQKILRLYPKNPSPLPKESFGAVLVFNYLHRPLFPNLCDAVKPGGLVLYKTFTWEHPSIALRPSNPAFLLRPRELKQLFEGWEVLEFIEGIEEKSRGDDDGGTVRRAVSSIVCRK 486
            A A + H +A Q    L   +   L +ESF  VLVFNYLHRPLFP +  ++KPGGL++Y+TFTW+   I  RP NP FLL   EL+ +F  W+ L + EG     R  D  G    A + ++ RK
Sbjct:   56 ALAELTHDKAHQWQWNLEDGSAPQLSQESFDIVLVFNYLHRPLFPQIAASLKPGGLIVYETFTWQQAQIG-RPRNPDFLLTENELQSVFANWQPLHYFEG-----RLSDAAGA-ESAKAQLIARK 173          
BLAST of mRNA_H-elongata_contig156034.3659.1 vs. uniprot
Match: UPI001F044F12 (class I SAM-dependent methyltransferase n=1 Tax=Shewanella sp. PS-2 TaxID=2766780 RepID=UPI001F044F12)

HSP 1 Score: 98.2 bits (243), Expect = 1.120e-22
Identity = 47/100 (47.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:  112 AAAVIEHHEARQKILRLYPKNPSPLPKESFGAVLVFNYLHRPLFPNLCDAVKPGGLVLYKTFTWEHPSIALRPSNPAFLLRPRELKQLFEGWEVLEFIEG 411
            A A + H +A      L   +   LP+E+F  VLVFNYLHRPLFP +  ++K GGL++Y+TFTW+   I  RP NP FLLR  EL+ +F  W+ L + EG
Sbjct:   56 AMAKLAHDKAHHWQWNLEDGSAPELPQETFDIVLVFNYLHRPLFPQIASSIKHGGLIVYETFTWQQAQIG-RPRNPDFLLRENELQSVFANWQPLHYFEG 154          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156034.3659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LP21_ECTSI1.900e-5959.28Methyl transferase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JPT9_9PHAE1.090e-5452.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7V0QL57_9DELT2.500e-2552.43Class I SAM-dependent methyltransferase n=2 Tax=De... [more]
UPI000838E8CE4.000e-2547.57methyltransferase domain-containing protein n=1 Ta... [more]
UPI00201082041.350e-2444.26class I SAM-dependent methyltransferase n=1 Tax=Sh... [more]
M5PUH0_DESAF1.420e-2447.57Ribosomal protein L11 methylase n=3 Tax=Desulfocur... [more]
A0A6H1U8T0_9GAMM1.500e-2360.26Class I SAM-dependent methyltransferase n=1 Tax=Fe... [more]
UPI000970308D7.780e-2345.90methyltransferase domain-containing protein n=1 Ta... [more]
A0A3S4P1C2_SHEPU1.040e-2243.20Tellurite resistance protein TehB homolog n=14 Tax... [more]
UPI001F044F121.120e-2247.00class I SAM-dependent methyltransferase n=1 Tax=Sh... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig156034contigH-elongata_contig156034:153..1246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score109.8
Seed ortholog evalue1.3e-21
Seed eggNOG ortholog94122.Shewana3_3316
EggNOG free text desc.Methyltransferase type 12
EggNOG OGs1QVT4@1224,1T2P6@1236,2QC0S@267890,COG0500@1,COG2226@2
COG Functional cat.Q
Best tax levelShewanellaceae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMethyl transferase
Ec32 orthologEc-06_006900.1
Exons2
Model size516
Cds size516
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929919.9284582-CDS-H-elongata_contig156034:152..3011622929919.9284582-CDS-H-elongata_contig156034:152..301Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156034 153..301 +
1691679208.7261045-CDS-H-elongata_contig156034:152..3011691679208.7261045-CDS-H-elongata_contig156034:152..301Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156034 153..301 +
1622929919.9558415-CDS-H-elongata_contig156034:879..12461622929919.9558415-CDS-H-elongata_contig156034:879..1246Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156034 880..1246 +
1691679208.7350032-CDS-H-elongata_contig156034:879..12461691679208.7350032-CDS-H-elongata_contig156034:879..1246Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156034 880..1246 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig156034.3659.1prot_H-elongata_contig156034.3659.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig156034 153..1246 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig156034.3659.1

>prot_H-elongata_contig156034.3659.1 ID=prot_H-elongata_contig156034.3659.1|Name=mRNA_H-elongata_contig156034.3659.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=172bp
LFLAQRDYEIGRRPRKIILLDRDIRKAVECTASLPDDAAAVIEHHEARQK
ILRLYPKNPSPLPKESFGAVLVFNYLHRPLFPNLCDAVKPGGLVLYKTFT
WEHPSIALRPSNPAFLLRPRELKQLFEGWEVLEFIEGIEEKSRGDDDGGT
VRRAVSSIVCRKQVLTPAGAC*
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mRNA from alignment at H-elongata_contig156034:153..1246+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig156034.3659.1 ID=mRNA_H-elongata_contig156034.3659.1|Name=mRNA_H-elongata_contig156034.3659.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1094bp|location=Sequence derived from alignment at H-elongata_contig156034:153..1246+ (Himanthalia elongata Himel1 dioecious)
TTGTTCTTGGCACAACGGGATTATGAGATCGGGCGCCGCCCTCGGAAGAT AATCTTGCTCGATCGGGACATCAGGAAGGCAGTCGAATGCACCGCCAGTC TTCCTGACGACGCCGCAGCAGTCATAGAGCATCATGAGGCGAGGCAAAAG TTATACGAATCAGGCTAAGGAAACGTGTTCCAGTACTACACTAGTTTGGA GTAATCAATCGATCGATCAATCGTAGTCGAGGGAGGGGGGGGGGTGAGTT TGCCTCTTACTTCGCCAGACTATGTACGACATTGCTCGTTTTTCATTTTT GAATTCGTTCGATTGAGTACGACATTGAGTACGACTTTGAGTCCAGCGCC CAAAGCGTGGGTTTGTCTATCTCATCTCTTGAGAGGCCACTATCTCATCT CTTGAGAGGATCTCTTGAGAGGCTCATCTCTTGAAAGGAGAGGCCAACGT GCTGGATGTACAACAAGTAAATACTTTTACGAAGTTTACTACAACAGCTG CTTCTTGCGAAGACGAATTTGAGTTCCTGATGCTCTAAATACAGTCTATT TGGCGCCAATAAATTCTTGTAAGCTTTGACGCGGAAGCTGTTGCTAATCT CCAACCGACCTCTCGCAGATCAACCCGTTCGACTAATTCCACTGTTATTT AGTATTGCATCGGCGCAGCTTTGAAATACACGACACACGCTGCTCCTAAA CGGCAGGTCGACCTGGAGACGGCAAAGAATCCTTCGCCTCTACCCAAAGA ATCCTTCGCCTCTACCCAAAGAATCCTTCGGTGCTGTTCTAGTGTTCAAC TATCTCCATCGGCCCCTCTTCCCCAACCTTTGCGACGCCGTCAAACCCGG AGGGCTGGTTTTGTACAAGACGTTCACGTGGGAGCATCCGTCCATCGCCC TGCGCCCGAGCAACCCGGCGTTTCTGCTCCGTCCTCGCGAGTTGAAACAG CTATTTGAAGGATGGGAAGTTTTGGAATTTATCGAGGGAATAGAAGAGAA ATCCCGAGGAGACGACGACGGGGGAACTGTTCGACGGGCGGTGTCGAGTA TCGTGTGCCGAAAGCAAGTGTTAACACCGGCTGGCGCATGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig156034:153..1246+

>mRNA_H-elongata_contig156034.3659.1 ID=mRNA_H-elongata_contig156034.3659.1|Name=mRNA_H-elongata_contig156034.3659.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1032bp|location=Sequence derived from alignment at H-elongata_contig156034:153..1246+ (Himanthalia elongata Himel1 dioecious)
TTGTTCTTGGCACAACGGGATTATGAGATCGGGCGCCGCCCTCGGAAGAT
AATCTTGCTCGATCGGGACATCAGGAAGGCAGTCGAATGCACCGCCAGTC
TTCCTGACGACGCCGCAGCAGTCATAGAGCATCATGAGGCGAGGCAAAAT
TGTTCTTGGCACAACGGGATTATGAGATCGGGCGCCGCCCTCGGAAGATA
ATCTTGCTCGATCGGGACATCAGGAAGGCAGTCGAATGCACCGCCAGTCT
TCCTGACGACGCCGCAGCAGTCATAGAGCATCATGAGGCGAGGCAAAAAA
TCCTTCGCCTCTACCCAAAGAATCCTTCGCCTCTACCCAAAGAATCCTTC
GGTGCTGTTCTAGTGTTCAACTATCTCCATCGGCCCCTCTTCCCCAACCT
TTGCGACGCCGTCAAACCCGGAGGGCTGGTTTTGTACAAGACGTTCACGT
GGGAGCATCCGTCCATCGCCCTGCGCCCGAGCAACCCGGCGTTTCTGCTC
CGTCCTCGCGAGTTGAAACAGCTATTTGAAGGATGGGAAGTTTTGGAATT
TATCGAGGGAATAGAAGAGAAATCCCGAGGAGACGACGACGGGGGAACTG
TTCGACGGGCGGTGTCGAGTATCGTGTGCCGAAAGCAAGTGTTAACACCG
GCTGGCGCATGCTGAAATCCTTCGCCTCTACCCAAAGAATCCTTCGCCTC
TACCCAAAGAATCCTTCGGTGCTGTTCTAGTGTTCAACTATCTCCATCGG
CCCCTCTTCCCCAACCTTTGCGACGCCGTCAAACCCGGAGGGCTGGTTTT
GTACAAGACGTTCACGTGGGAGCATCCGTCCATCGCCCTGCGCCCGAGCA
ACCCGGCGTTTCTGCTCCGTCCTCGCGAGTTGAAACAGCTATTTGAAGGA
TGGGAAGTTTTGGAATTTATCGAGGGAATAGAAGAGAAATCCCGAGGAGA
CGACGACGGGGGAACTGTTCGACGGGCGGTGTCGAGTATCGTGTGCCGAA
AGCAAGTGTTAACACCGGCTGGCGCATGCTGA
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