mRNA_H-elongata_contig156034.3659.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig156034.3659.1 vs. uniprot
Match: D8LP21_ECTSI (Methyl transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP21_ECTSI) HSP 1 Score: 193 bits (490), Expect = 1.900e-59 Identity = 99/167 (59.28%), Postives = 123/167 (73.65%), Query Frame = 1
Query: 1 LFLAQRDYEIGRRPRKIILLDRDIRKAVECTASLPDDAAAVIEHHEARQKILRLYPKNPSPLPKESFGAVLVFNYLHRPLFPNLCDAVKPGGLVLYKTFTWEHPSIALRPSNPAFLLRPRELK-QLFEGWEVLEFIEGIE--EKSRGDDDGGTVRRAVSSIVCRKQV 492
LF+AQ D + GRR RK++LLDR+I +AV CTA LP+ ++ H E + +NPSPLP+E+FGAVLVFNYLHRPL NL D+VKPGGLVLYKTFTW+HPS+ +RPSNPAFLL P ELK ++F GWEV++F EG+ E + + G R AVSSIVCRK V
Sbjct: 34 LFVAQSDQDKGRRDRKVVLLDRNIGEAVRCTADLPEATRELVVHQETDLET----EENPSPLPRETFGAVLVFNYLHRPLVANLRDSVKPGGLVLYKTFTWQHPSVGVRPSNPAFLLGPGELKDEMFAGWEVIDFFEGVVVVEGNASAEGSGVRRVAVSSIVCRKPV 196
BLAST of mRNA_H-elongata_contig156034.3659.1 vs. uniprot
Match: A0A6H5JPT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPT9_9PHAE) HSP 1 Score: 181 bits (460), Expect = 1.090e-54 Identity = 101/192 (52.60%), Postives = 124/192 (64.58%), Query Frame = 1
Query: 1 LFLAQRDYEIGRRPRKIILLDRDIRKAVECTASLPDDAAAVIEHHEAR----------QKILRLY---------------PKNPSPLPKESFGAVLVFNYLHRPLFPNLCDAVKPGGLVLYKTFTWEHPSIALRPSNPAFLLRPRELK-QLFEGWEVLEFIEGIE--EKSRGDDDGGTVRRAVSSIVCRKQV 492
LF+AQ D + GRR RK++LLDR+I +A TA LP+ ++ H E Q LY +NPSPLP+E+FGAVLVFNYLHRPL NL D+V+PGGLVLYKTFTW+HPS+ +RPSNPAFLL P ELK ++F GWEV++F EG+ E + D GG R AVSSIVCRK V
Sbjct: 23 LFVAQSDQDKGRRNRKVVLLDRNIGEAARRTAELPEATRELVVHQEVALVWFGTEVDSQGFPPLYFSPCLYLLAQTDLETEENPSPLPEEAFGAVLVFNYLHRPLVANLRDSVQPGGLVLYKTFTWQHPSVGVRPSNPAFLLGPGELKDEMFAGWEVIDFFEGVVVVEGTASADGGGVRRAAVSSIVCRKPV 214
BLAST of mRNA_H-elongata_contig156034.3659.1 vs. uniprot
Match: A0A7V0QL57_9DELT (Class I SAM-dependent methyltransferase n=2 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V0QL57_9DELT) HSP 1 Score: 105 bits (262), Expect = 2.500e-25 Identity = 54/103 (52.43%), Postives = 71/103 (68.93%), Query Frame = 1
Query: 178 SPLPKESFGAVLVFNYLHRPLFPNLCDAVKPGGLVLYKTFTWEHPSIALRPSNPAFLLRPRELKQLFEGWEVLEFIEGIEEKSRGDDDGGTVRRAVSSIVCRK 486
SPLP+E FG +LVF YL+R LFP + A+KPGGL++Y+TFT + P +P NP+FLLRP EL+ +F W VL +IEGI + D D RAV+ IVC+K
Sbjct: 101 SPLPQEHFGVILVFRYLYRRLFPEIRAALKPGGLLIYETFTTQQPQFG-KPKNPSFLLRPGELRMVFGDWRVLHYIEGIVK----DPD-----RAVAQIVCKK 193
BLAST of mRNA_H-elongata_contig156034.3659.1 vs. uniprot
Match: UPI000838E8CE (methyltransferase domain-containing protein n=1 Tax=Thalassotalea crassostreae TaxID=1763536 RepID=UPI000838E8CE) HSP 1 Score: 104 bits (259), Expect = 4.000e-25 Identity = 49/103 (47.57%), Postives = 72/103 (69.90%), Query Frame = 1
Query: 178 SPLPKESFGAVLVFNYLHRPLFPNLCDAVKPGGLVLYKTFTWEHPSIALRPSNPAFLLRPRELKQLFEGWEVLEFIEGIEEKSRGDDDGGTVRRAVSSIVCRK 486
SPL +SF ++LVFNYLHRPL ++ A++PGGL++Y+TFT E P RP+NP FLL+P+EL + F+ W+VL + EGI +K + ++A++ IV RK
Sbjct: 74 SPLTGKSFSSILVFNYLHRPLMASIKQAIQPGGLIVYETFTTEQPQFG-RPTNPKFLLKPKELLEHFDDWQVLHYFEGIVDKEDSSN-----KKAIAQIVARK 170
BLAST of mRNA_H-elongata_contig156034.3659.1 vs. uniprot
Match: UPI0020108204 (class I SAM-dependent methyltransferase n=1 Tax=Shewanella kaireitica TaxID=212021 RepID=UPI0020108204) HSP 1 Score: 103 bits (256), Expect = 1.350e-24 Identity = 54/122 (44.26%), Postives = 73/122 (59.84%), Query Frame = 1
Query: 49 IILLDRDIRKAVECTASLPDDAAAVIEHHEARQKILRLYPKNPSPLPKESFGAVLVFNYLHRPLFPNLCDAVKPGGLVLYKTFTWEHPSIALRPSNPAFLLRPRELKQLFEGWEVLEFIEGI 414
+ LDRD+ + + DD ++E L +NP LP S+ AV+VFNYLHRPLFP + DA+KPGGL++Y+TFT + +I RP NP FLL+ ELK LF W L + EG+
Sbjct: 51 VTFLDRDLS---QLEPNQTDDRVKLLEWD--------LETENPPTLPSNSYDAVIVFNYLHRPLFPQIIDAIKPGGLIIYETFTRQQATIG-RPRNPNFLLKETELKALFANWRCLHYSEGL 160
BLAST of mRNA_H-elongata_contig156034.3659.1 vs. uniprot
Match: M5PUH0_DESAF (Ribosomal protein L11 methylase n=3 Tax=Desulfocurvibacter africanus TaxID=873 RepID=M5PUH0_DESAF) HSP 1 Score: 103 bits (256), Expect = 1.420e-24 Identity = 49/103 (47.57%), Postives = 70/103 (67.96%), Query Frame = 1
Query: 178 SPLPKESFGAVLVFNYLHRPLFPNLCDAVKPGGLVLYKTFTWEHPSIALRPSNPAFLLRPRELKQLFEGWEVLEFIEGIEEKSRGDDDGGTVRRAVSSIVCRK 486
+PLP E++G ++VF YLHRPLFP++ A+KPGGL+ Y+T+T + P +P+NP FLLRPREL++ F G++++ EGI E RA + IVCRK
Sbjct: 83 NPLPAENYGGIIVFRYLHRPLFPSIRRALKPGGLLAYETYTLDQPRFG-KPTNPDFLLRPRELREAFSGFKIIHAFEGILENPT---------RAAAQIVCRK 175
BLAST of mRNA_H-elongata_contig156034.3659.1 vs. uniprot
Match: A0A6H1U8T0_9GAMM (Class I SAM-dependent methyltransferase n=1 Tax=Ferrimonas lipolytica TaxID=2724191 RepID=A0A6H1U8T0_9GAMM) HSP 1 Score: 100 bits (249), Expect = 1.500e-23 Identity = 47/78 (60.26%), Postives = 58/78 (74.36%), Query Frame = 1
Query: 178 SPLPKESFGAVLVFNYLHRPLFPNLCDAVKPGGLVLYKTFTWEHPSIALRPSNPAFLLRPRELKQLFEGWEVLEFIEG 411
+P + F AV+ FNYLHR LFP L DAVKPGGLV+Y+TFT + I RPSNPAFLL+P ELKQ F W++L ++EG
Sbjct: 83 NPFAGKQFAAVIGFNYLHRELFPWLIDAVKPGGLVIYETFTIKQAEIG-RPSNPAFLLKPNELKQFFASWQILHYVEG 159
BLAST of mRNA_H-elongata_contig156034.3659.1 vs. uniprot
Match: UPI000970308D (methyltransferase domain-containing protein n=1 Tax=Shewanella sp. UCD-KL12 TaxID=1917163 RepID=UPI000970308D) HSP 1 Score: 98.6 bits (244), Expect = 7.780e-23 Identity = 56/122 (45.90%), Postives = 74/122 (60.66%), Query Frame = 1
Query: 46 KIILLDRDIRKAVECTASLPDDAAAVIEHHEARQKILRLYPKNPSPLPKESFGAVLVFNYLHRPLFPNLCDAVKPGGLVLYKTFTWEHPSIALRPSNPAFLLRPRELKQLFEGWEVLEFIEG 411
KI LDRD+ + L DA+A H+ + L L P LPKE + +LVFNYLHRPLFP + A+KPGG+++Y+TF + I RP NP FLL+ ELK LF+ WE L++ EG
Sbjct: 48 KITFLDRDL-------SQLERDASA----HQYLEWDLELEPI--PQLPKEQYDIILVFNYLHRPLFPQIAAALKPGGIIVYETFIEKQAEIG-RPRNPDFLLKTNELKSLFDKWECLQYFEG 155
BLAST of mRNA_H-elongata_contig156034.3659.1 vs. uniprot
Match: A0A3S4P1C2_SHEPU (Tellurite resistance protein TehB homolog n=14 Tax=Shewanella TaxID=22 RepID=A0A3S4P1C2_SHEPU) HSP 1 Score: 98.2 bits (243), Expect = 1.040e-22 Identity = 54/125 (43.20%), Postives = 72/125 (57.60%), Query Frame = 1
Query: 112 AAAVIEHHEARQKILRLYPKNPSPLPKESFGAVLVFNYLHRPLFPNLCDAVKPGGLVLYKTFTWEHPSIALRPSNPAFLLRPRELKQLFEGWEVLEFIEGIEEKSRGDDDGGTVRRAVSSIVCRK 486
A A + H +A Q L + L +ESF VLVFNYLHRPLFP + ++KPGGL++Y+TFTW+ I RP NP FLL EL+ +F W+ L + EG R D G A + ++ RK
Sbjct: 56 ALAELTHDKAHQWQWNLEDGSAPQLSQESFDIVLVFNYLHRPLFPQIAASLKPGGLIVYETFTWQQAQIG-RPRNPDFLLTENELQSVFANWQPLHYFEG-----RLSDAAGA-ESAKAQLIARK 173
BLAST of mRNA_H-elongata_contig156034.3659.1 vs. uniprot
Match: UPI001F044F12 (class I SAM-dependent methyltransferase n=1 Tax=Shewanella sp. PS-2 TaxID=2766780 RepID=UPI001F044F12) HSP 1 Score: 98.2 bits (243), Expect = 1.120e-22 Identity = 47/100 (47.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query: 112 AAAVIEHHEARQKILRLYPKNPSPLPKESFGAVLVFNYLHRPLFPNLCDAVKPGGLVLYKTFTWEHPSIALRPSNPAFLLRPRELKQLFEGWEVLEFIEG 411
A A + H +A L + LP+E+F VLVFNYLHRPLFP + ++K GGL++Y+TFTW+ I RP NP FLLR EL+ +F W+ L + EG
Sbjct: 56 AMAKLAHDKAHHWQWNLEDGSAPELPQETFDIVLVFNYLHRPLFPQIASSIKHGGLIVYETFTWQQAQIG-RPRNPDFLLRENELQSVFANWQPLHYFEG 154 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156034.3659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig156034.3659.1 >prot_H-elongata_contig156034.3659.1 ID=prot_H-elongata_contig156034.3659.1|Name=mRNA_H-elongata_contig156034.3659.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=172bp LFLAQRDYEIGRRPRKIILLDRDIRKAVECTASLPDDAAAVIEHHEARQKback to top mRNA from alignment at H-elongata_contig156034:153..1246+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig156034.3659.1 ID=mRNA_H-elongata_contig156034.3659.1|Name=mRNA_H-elongata_contig156034.3659.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1094bp|location=Sequence derived from alignment at H-elongata_contig156034:153..1246+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig156034:153..1246+ >mRNA_H-elongata_contig156034.3659.1 ID=mRNA_H-elongata_contig156034.3659.1|Name=mRNA_H-elongata_contig156034.3659.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1032bp|location=Sequence derived from alignment at H-elongata_contig156034:153..1246+ (Himanthalia elongata Himel1 dioecious)back to top |