mRNA_H-elongata_contig155665.3647.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig155665.3647.1
Unique NamemRNA_H-elongata_contig155665.3647.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig155665.3647.1 vs. uniprot
Match: D7G373_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G373_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 1.400e-17
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:    4 VVFATETLAAGVNMPARATVITTLSKRIDTGIVKLSPSQLLQMGGR 141
            VVFATETLAAGVNMPARATVITTLSKRIDTGIVKL+PSQLLQMGGR
Sbjct:  710 VVFATETLAAGVNMPARATVITTLSKRIDTGIVKLNPSQLLQMGGR 755
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BLAST of mRNA_H-elongata_contig155665.3647.1 vs. uniprot
Match: A0A835Z819_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z819_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 4.130e-13
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 KVVFATETLAAGVNMPARATVITTLSKRIDTGIVKLSPSQLLQMGGR 141
            KVVFATETLAAGVNMPAR+TVI+ LSKR DTGI+ L PSQLLQM GR
Sbjct:  550 KVVFATETLAAGVNMPARSTVISVLSKRGDTGIMPLLPSQLLQMAGR 596
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BLAST of mRNA_H-elongata_contig155665.3647.1 vs. uniprot
Match: A0A2P2KHL0_RHIMU (DEAD-box ATP-dependent RNA helicase ISE2ic-like n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2KHL0_RHIMU)

HSP 1 Score: 67.8 bits (164), Expect = 5.030e-12
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 KVVFATETLAAGVNMPARATVITTLSKRIDTGIVKLSPSQLLQMGGR 141
            KVVFATETLAAG+NMPAR  VI++LSKRI TG ++LSP++LLQM GR
Sbjct:  128 KVVFATETLAAGINMPARTAVISSLSKRIGTGRIQLSPNELLQMAGR 174
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BLAST of mRNA_H-elongata_contig155665.3647.1 vs. uniprot
Match: A0A7S3S2D9_EMIHU (Hypothetical protein (Fragment) n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3S2D9_EMIHU)

HSP 1 Score: 65.1 bits (157), Expect = 9.220e-12
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    1 KVVFATETLAAGVNMPARATVITTLSKRIDTGIVKLSPSQLLQMGGR 141
            KVVFATETLAAG+NMPAR TV+TTLSKR D G+  L+ S LLQM GR
Sbjct:  126 KVVFATETLAAGINMPARTTVVTTLSKRGDRGVEPLAASALLQMAGR 172
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BLAST of mRNA_H-elongata_contig155665.3647.1 vs. uniprot
Match: A0A200QV60_9MAGN (Helicase n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QV60_9MAGN)

HSP 1 Score: 67.0 bits (162), Expect = 9.390e-12
Identity = 33/47 (70.21%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    1 KVVFATETLAAGVNMPARATVITTLSKRIDTGIVKLSPSQLLQMGGR 141
            K+VFATETLAAG+NMPAR TVI++LSKR ++G ++LSP++LLQM GR
Sbjct:  471 KIVFATETLAAGINMPARTTVISSLSKRCESGRIQLSPNELLQMAGR 517
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BLAST of mRNA_H-elongata_contig155665.3647.1 vs. uniprot
Match: A0A7S0JFP4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JFP4_9EUKA)

HSP 1 Score: 66.6 bits (161), Expect = 1.190e-11
Identity = 37/47 (78.72%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 KVVFATETLAAGVNMPARATVITTLSKRIDTGIVKLSPSQLLQMGGR 141
            K VFATETLAAG+NMPAR TVIT LSKR D GI  LS SQLLQM GR
Sbjct:  287 KAVFATETLAAGINMPARTTVITVLSKRGDLGIAPLSASQLLQMSGR 333
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BLAST of mRNA_H-elongata_contig155665.3647.1 vs. uniprot
Match: A0A4Y7L6N2_PAPSO (Uncharacterized protein n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7L6N2_PAPSO)

HSP 1 Score: 66.6 bits (161), Expect = 1.280e-11
Identity = 33/47 (70.21%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 KVVFATETLAAGVNMPARATVITTLSKRIDTGIVKLSPSQLLQMGGR 141
            KV+FATETLAAG+NMPAR  VI++LSKR +TG ++LSP++LLQM GR
Sbjct:  524 KVIFATETLAAGINMPARTAVISSLSKRCETGRIQLSPNELLQMAGR 570
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BLAST of mRNA_H-elongata_contig155665.3647.1 vs. uniprot
Match: K8YRA8_NANGC (Type iii restriction res subunit n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YRA8_NANGC)

HSP 1 Score: 66.2 bits (160), Expect = 1.620e-11
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 KVVFATETLAAGVNMPARATVITTLSKRIDTGIVKLSPSQLLQMGGR 141
            +VVFATETLAAGVNMPARATVI+TLSK+I    + L PSQLLQM GR
Sbjct:  126 RVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGR 172
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BLAST of mRNA_H-elongata_contig155665.3647.1 vs. uniprot
Match: A0A4D9D0G8_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0G8_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.750e-11
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 KVVFATETLAAGVNMPARATVITTLSKRIDTGIVKLSPSQLLQMGGR 141
            +VVFATETLAAGVNMPARATVI+TLSK+I    + L PSQLLQM GR
Sbjct:  590 RVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGR 636
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BLAST of mRNA_H-elongata_contig155665.3647.1 vs. uniprot
Match: A0A6A3BBU3_HIBSY (DEAD-box ATP-dependent RNA helicase ISE2 n=3 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BBU3_HIBSY)

HSP 1 Score: 66.2 bits (160), Expect = 1.750e-11
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 KVVFATETLAAGVNMPARATVITTLSKRIDTGIVKLSPSQLLQMGGR 141
            KVVFATETLAAG+NMPAR  VI++LSKR  TG ++LSP++LLQM GR
Sbjct:  529 KVVFATETLAAGINMPARTAVISSLSKRTSTGRIQLSPNELLQMAGR 575
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig155665.3647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G373_ECTSI1.400e-1797.83DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A835Z819_9STRA4.130e-1382.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2P2KHL0_RHIMU5.030e-1274.47DEAD-box ATP-dependent RNA helicase ISE2ic-like n=... [more]
A0A7S3S2D9_EMIHU9.220e-1274.47Hypothetical protein (Fragment) n=2 Tax=Emiliania ... [more]
A0A200QV60_9MAGN9.390e-1270.21Helicase n=1 Tax=Macleaya cordata TaxID=56857 RepI... [more]
A0A7S0JFP4_9EUKA1.190e-1178.72Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A4Y7L6N2_PAPSO1.280e-1170.21Uncharacterized protein n=2 Tax=Papaver somniferum... [more]
K8YRA8_NANGC1.620e-1176.60Type iii restriction res subunit n=1 Tax=Nannochlo... [more]
A0A4D9D0G8_9STRA1.750e-1176.60Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A6A3BBU3_HIBSY1.750e-1172.34DEAD-box ATP-dependent RNA helicase ISE2 n=3 Tax=H... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig155665contigH-elongata_contig155665:36..176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue9.4e-15
Seed eggNOG ortholog2880.D7G373
KEGG koko:K12599
KEGG Pathwayko03018,map03018
KEGG ModuleM00392
GOsGO:0000003,GO:0000373,GO:0000375,GO:0000377,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0007275,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0009892,GO:0009987,GO:0010154,GO:0010467,GO:0010468,GO:0010494,GO:0010496,GO:0010497,GO:0010501,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0035770,GO:0036464,GO:0040029,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048316,GO:0048519,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0051179,GO:0051234,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0070035,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay
EggNOG OGsCOG4581@1,KOG0947@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929918.6398566-CDS-H-elongata_contig155665:35..1761622929918.6398566-CDS-H-elongata_contig155665:35..176Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155665 36..176 -
1691679208.1068797-CDS-H-elongata_contig155665:35..1761691679208.1068797-CDS-H-elongata_contig155665:35..176Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155665 36..176 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig155665.3647.1prot_H-elongata_contig155665.3647.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig155665 36..176 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig155665.3647.1

>prot_H-elongata_contig155665.3647.1 ID=prot_H-elongata_contig155665.3647.1|Name=mRNA_H-elongata_contig155665.3647.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
KVVFATETLAAGVNMPARATVITTLSKRIDTGIVKLSPSQLLQMGGR
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mRNA from alignment at H-elongata_contig155665:36..176-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig155665.3647.1 ID=mRNA_H-elongata_contig155665.3647.1|Name=mRNA_H-elongata_contig155665.3647.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=141bp|location=Sequence derived from alignment at H-elongata_contig155665:36..176- (Himanthalia elongata Himel1 dioecious)
AAGGTGGTGTTCGCCACGGAGACGCTTGCAGCGGGGGTCAACATGCCGGC
GAGGGCCACCGTGATCACGACGCTCTCCAAGCGCATCGACACGGGCATCG
TCAAGCTCAGTCCGTCGCAGCTGCTGCAAATGGGGGGTCGG
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Coding sequence (CDS) from alignment at H-elongata_contig155665:36..176-

>mRNA_H-elongata_contig155665.3647.1 ID=mRNA_H-elongata_contig155665.3647.1|Name=mRNA_H-elongata_contig155665.3647.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig155665:36..176- (Himanthalia elongata Himel1 dioecious)
AAGGTGGTGTTCGCCACGGAGACGCTTGCAGCGGGGGTCAACATGCCGGC
GAGGGCCACCGTGATCACGACGCTCTCCAAGCGCATCGACACGGGCATCG
TCAAGCTCAGTCCGTCGCAGCTGCTGCAAATGGGGGGTCGGAAGGTGGTG
TTCGCCACGGAGACGCTTGCAGCGGGGGTCAACATGCCGGCGAGGGCCAC
CGTGATCACGACGCTCTCCAAGCGCATCGACACGGGCATCGTCAAGCTCA
GTCCGTCGCAGCTGCTGCAAATGGGGGGTCGG
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