mRNA_H-elongata_contig155549.3642.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig155549.3642.1 vs. uniprot
Match: D7G6Q8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6Q8_ECTSI) HSP 1 Score: 218 bits (555), Expect = 1.760e-69 Identity = 100/128 (78.12%), Postives = 118/128 (92.19%), Query Frame = 1
Query: 1 IAAVENDPLLKLVEKDPEGLYVVALAKSAVPPDGFDKIEFLFKPTDGLVSFRSKSLKDAYAGPALVGDGNSNRNRMKAFRKKLGWPERGIDDYIRDQGIDSGTSRAKGYLSEFGWRQAETQSYGEDDD 384
+ AVENDP LKLV++D + LY+ A+AKSAVPPDGFDK+EFLFKP+DGLVSFRSKSLK+ YAGP +VGDGNSNRNR++A RKKLGWPE GID+Y+RDQGIDSGTSRAKGYLSEFGWR+ E+QSYGE+D+
Sbjct: 127 LKAVENDPQLKLVDQDADALYISAMAKSAVPPDGFDKVEFLFKPSDGLVSFRSKSLKNVYAGPVIVGDGNSNRNRLEALRKKLGWPEEGIDNYMRDQGIDSGTSRAKGYLSEFGWRKVESQSYGEEDE 254
BLAST of mRNA_H-elongata_contig155549.3642.1 vs. uniprot
Match: A0A7S0QPZ6_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QPZ6_9CRYP) HSP 1 Score: 73.6 bits (179), Expect = 6.100e-13 Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = 1
Query: 1 IAAVENDPLLKLVEKDPEGLYVVALAKSAVPPDGFDKIEFLFKPTDGLVSFRSKSLKDAYAGPALVG--DGNSNRNRMKAFRKKLGWPE 261
+AAVE DP L++V+ + Y+ A AKS VP DG D +EFL P++ +V++RS S ++ Y P V DG R RM+ ++LGW E
Sbjct: 160 LAAVERDPSLRVVQVNDTAFYLRAEAKSKVPQDGTDDVEFLLIPSEKIVTYRSASRQNVYIYPYQVAIPDGGYQRQRMRGLLQELGWVE 248
BLAST of mRNA_H-elongata_contig155549.3642.1 vs. uniprot
Match: M1VGZ3_CYAM1 (Uncharacterized protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VGZ3_CYAM1) HSP 1 Score: 65.1 bits (157), Expect = 2.850e-10 Identity = 38/86 (44.19%), Postives = 50/86 (58.14%), Query Frame = 1
Query: 4 AAVENDPLLKLVEKDPEGLYVVALAKSAVPPDGFDKIEFLFKPTDGLVSFRSKSLKDAYAGP--ALVGDGNSNRNRMKAFRKKLGW 255
AAV +P + + E D G Y+ A A S PP G D IEFL +P + LV +RS+S K Y P +GD SNR R++ R +LGW
Sbjct: 114 AAVRAEPGVAVREVD--GFYLHATAPSVFPPGGEDDIEFLLRPEEKLVLYRSRSQKVTYIYPFHQPLGDFGSNRKRLERIRDRLGW 197
BLAST of mRNA_H-elongata_contig155549.3642.1 vs. uniprot
Match: A0A7J7II66_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7II66_9RHOD) HSP 1 Score: 60.5 bits (145), Expect = 1.540e-8 Identity = 34/86 (39.53%), Postives = 49/86 (56.98%), Query Frame = 1
Query: 4 AAVENDPLLKLVEKDPEGLYVVALAKSAVPPDGFDKIEFLFKPTDGLVSFRSKSLKDAYAGPAL--VGDGNSNRNRMKAFRKKLGW 255
AAV +P L++ + + Y+ A S PP G D IEFL +P D +V +RS S K Y P L +GD +N+ R++ R +LGW
Sbjct: 114 AAVRAEPGLEVQKV--QKYYLYATGPSVFPPGGVDDIEFLMRPMDEVVLYRSSSRKVTYVYPFLQPLGDFGTNKARLERIRNRLGW 197
BLAST of mRNA_H-elongata_contig155549.3642.1 vs. uniprot
Match: A0A7S0CBW6_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CBW6_9STRA) HSP 1 Score: 54.7 bits (130), Expect = 2.450e-6 Identity = 31/76 (40.79%), Postives = 40/76 (52.63%), Query Frame = 1
Query: 61 YVVALAKSAVPP-----DGFDKIEFLFKPTDGLVSFRSKSLKDAYAGPAL--VGDGNSNRNRMKAFRKKLGWPERG 267
Y+ A AK+ PP D D +EFL +P D LV +RS S + P V D NSN R++ R+ LGW E G
Sbjct: 136 YLHATAKTVSPPGLTGEDALDDLEFLLRPDDNLVLYRSSSRISVFVYPLTQPVSDRNSNLKRLERIRETLGWEEMG 211
BLAST of mRNA_H-elongata_contig155549.3642.1 vs. uniprot
Match: A0A448ZTA6_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZTA6_9STRA) HSP 1 Score: 55.1 bits (131), Expect = 2.520e-6 Identity = 32/92 (34.78%), Postives = 47/92 (51.09%), Query Frame = 1
Query: 4 AAVENDPLLKLVEKDPEGLYVVALAKSAVPP--DGFDKIEFLFKPTDGLVSFRSKSLKDAYAGPAL--VGDGNSNRNRMKAFRKKLGWPERG 267
A + DP +++E Y+ A ++ PP DG D +EFL +P D +V +RS S + P V D N+N R++ R LGW E G
Sbjct: 174 AVLNVDPTCQIIEIT--DTYLHATVATSAPPGIDGLDDMEFLIRPEDNVVLYRSASRTSVFVYPLTQPVSDNNTNLKRLQKIRATLGWEELG 263
BLAST of mRNA_H-elongata_contig155549.3642.1 vs. uniprot
Match: D8LT63_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT63_ECTSI) HSP 1 Score: 53.5 bits (127), Expect = 8.740e-6 Identity = 32/89 (35.96%), Postives = 48/89 (53.93%), Query Frame = 1
Query: 1 IAAVE--NDPLLKLVEKDPEGLYVVALAKSAVPPDGFDKIEFLFKPTDGLVSFRSKSLKDAYAGPAL--VGDGNSNRNRMKAFRKKLGW 255
+ AVE ++ +K+V++ EG Y++A S VPP D +EFL KP D +V +RS S + P V D + R++ R LGW
Sbjct: 173 VHAVERTSEATMKIVDR--EGHYILAEFPSKVPPGSVDSVEFLVKPEDQIVLYRSVSRDTLFLYPLQQPVSDQGKIKERLEGIRNDLGW 259
BLAST of mRNA_H-elongata_contig155549.3642.1 vs. uniprot
Match: A0A1E7FHJ7_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FHJ7_9STRA) HSP 1 Score: 53.1 bits (126), Expect = 1.400e-5 Identity = 27/73 (36.99%), Postives = 40/73 (54.79%), Query Frame = 1
Query: 61 YVVALAKSAVPP--DGFDKIEFLFKPTDGLVSFRSKSLKDAYAGPAL--VGDGNSNRNRMKAFRKKLGWPERG 267
Y+ A+ + PP +G D +EFL +P D ++ +RS S + P V D NSN R++ R+ LGW E G
Sbjct: 243 YLHAIVPTTSPPGIEGVDDLEFLIRPDDNVILYRSASRTSVFVYPLTQPVSDNNSNLKRLQKIRQSLGWEELG 315
BLAST of mRNA_H-elongata_contig155549.3642.1 vs. uniprot
Match: A0A6V1S530_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S530_HETAK) HSP 1 Score: 52.8 bits (125), Expect = 1.720e-5 Identity = 30/90 (33.33%), Postives = 43/90 (47.78%), Query Frame = 1
Query: 1 IAAVENDPL---LKLVEKDPEGLYVVALAKSAVPPDGFDKIEFLFKPTDGLVSFRSKSLKDAYAGP--ALVGDGNSNRNRMKAFRKKLGW 255
+ E D L LK+VEKDP Y+ A + VPP D +EFL +P D +V +RS + P + + R++ R LGW
Sbjct: 167 VELAETDSLNLGLKVVEKDPSRYYLHLTAPAKVPPGSTDDLEFLLRPADKIVLYRSATRDTVLVYPFQQYLPEHGQTAGRLETIRDSLGW 256
BLAST of mRNA_H-elongata_contig155549.3642.1 vs. uniprot
Match: A0A8J2WE71_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WE71_9STRA) HSP 1 Score: 52.0 bits (123), Expect = 3.150e-5 Identity = 33/94 (35.11%), Postives = 44/94 (46.81%), Query Frame = 1
Query: 1 IAAVENDPLLKLVEKDPEGLYVVALAKSAVP---PDGFDKIEFLFKPTDGLVSFRSKSLKDAYAGPAL------VGDGNSNRNRMKAFRKKLGW 255
+ A + P LK+ E DP Y+ A A S + D +E L GLV RS S + + P +GD SNR R++A RK LGW
Sbjct: 155 VKAAQASPDLKIAETDPARRYLRATAPSQISNYKATDVDDVEVLISAEKGLVFHRSASRESVFFFPPQNIYSVPLGDNGSNRGRLEALRKALGW 248 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig155549.3642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig155549.3642.1 >prot_H-elongata_contig155549.3642.1 ID=prot_H-elongata_contig155549.3642.1|Name=mRNA_H-elongata_contig155549.3642.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp IAAVENDPLLKLVEKDPEGLYVVALAKSAVPPDGFDKIEFLFKPTDGLVSback to top mRNA from alignment at H-elongata_contig155549:147..1371- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig155549.3642.1 ID=mRNA_H-elongata_contig155549.3642.1|Name=mRNA_H-elongata_contig155549.3642.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1225bp|location=Sequence derived from alignment at H-elongata_contig155549:147..1371- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig155549:147..1371- >mRNA_H-elongata_contig155549.3642.1 ID=mRNA_H-elongata_contig155549.3642.1|Name=mRNA_H-elongata_contig155549.3642.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig155549:147..1371- (Himanthalia elongata Himel1 dioecious)back to top |