mRNA_H-elongata_contig155549.3642.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig155549.3642.1
Unique NamemRNA_H-elongata_contig155549.3642.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig155549.3642.1 vs. uniprot
Match: D7G6Q8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6Q8_ECTSI)

HSP 1 Score: 218 bits (555), Expect = 1.760e-69
Identity = 100/128 (78.12%), Postives = 118/128 (92.19%), Query Frame = 1
Query:    1 IAAVENDPLLKLVEKDPEGLYVVALAKSAVPPDGFDKIEFLFKPTDGLVSFRSKSLKDAYAGPALVGDGNSNRNRMKAFRKKLGWPERGIDDYIRDQGIDSGTSRAKGYLSEFGWRQAETQSYGEDDD 384
            + AVENDP LKLV++D + LY+ A+AKSAVPPDGFDK+EFLFKP+DGLVSFRSKSLK+ YAGP +VGDGNSNRNR++A RKKLGWPE GID+Y+RDQGIDSGTSRAKGYLSEFGWR+ E+QSYGE+D+
Sbjct:  127 LKAVENDPQLKLVDQDADALYISAMAKSAVPPDGFDKVEFLFKPSDGLVSFRSKSLKNVYAGPVIVGDGNSNRNRLEALRKKLGWPEEGIDNYMRDQGIDSGTSRAKGYLSEFGWRKVESQSYGEEDE 254          
BLAST of mRNA_H-elongata_contig155549.3642.1 vs. uniprot
Match: A0A7S0QPZ6_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QPZ6_9CRYP)

HSP 1 Score: 73.6 bits (179), Expect = 6.100e-13
Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    1 IAAVENDPLLKLVEKDPEGLYVVALAKSAVPPDGFDKIEFLFKPTDGLVSFRSKSLKDAYAGPALVG--DGNSNRNRMKAFRKKLGWPE 261
            +AAVE DP L++V+ +    Y+ A AKS VP DG D +EFL  P++ +V++RS S ++ Y  P  V   DG   R RM+   ++LGW E
Sbjct:  160 LAAVERDPSLRVVQVNDTAFYLRAEAKSKVPQDGTDDVEFLLIPSEKIVTYRSASRQNVYIYPYQVAIPDGGYQRQRMRGLLQELGWVE 248          
BLAST of mRNA_H-elongata_contig155549.3642.1 vs. uniprot
Match: M1VGZ3_CYAM1 (Uncharacterized protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VGZ3_CYAM1)

HSP 1 Score: 65.1 bits (157), Expect = 2.850e-10
Identity = 38/86 (44.19%), Postives = 50/86 (58.14%), Query Frame = 1
Query:    4 AAVENDPLLKLVEKDPEGLYVVALAKSAVPPDGFDKIEFLFKPTDGLVSFRSKSLKDAYAGP--ALVGDGNSNRNRMKAFRKKLGW 255
            AAV  +P + + E D  G Y+ A A S  PP G D IEFL +P + LV +RS+S K  Y  P    +GD  SNR R++  R +LGW
Sbjct:  114 AAVRAEPGVAVREVD--GFYLHATAPSVFPPGGEDDIEFLLRPEEKLVLYRSRSQKVTYIYPFHQPLGDFGSNRKRLERIRDRLGW 197          
BLAST of mRNA_H-elongata_contig155549.3642.1 vs. uniprot
Match: A0A7J7II66_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7II66_9RHOD)

HSP 1 Score: 60.5 bits (145), Expect = 1.540e-8
Identity = 34/86 (39.53%), Postives = 49/86 (56.98%), Query Frame = 1
Query:    4 AAVENDPLLKLVEKDPEGLYVVALAKSAVPPDGFDKIEFLFKPTDGLVSFRSKSLKDAYAGPAL--VGDGNSNRNRMKAFRKKLGW 255
            AAV  +P L++ +   +  Y+ A   S  PP G D IEFL +P D +V +RS S K  Y  P L  +GD  +N+ R++  R +LGW
Sbjct:  114 AAVRAEPGLEVQKV--QKYYLYATGPSVFPPGGVDDIEFLMRPMDEVVLYRSSSRKVTYVYPFLQPLGDFGTNKARLERIRNRLGW 197          
BLAST of mRNA_H-elongata_contig155549.3642.1 vs. uniprot
Match: A0A7S0CBW6_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CBW6_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.450e-6
Identity = 31/76 (40.79%), Postives = 40/76 (52.63%), Query Frame = 1
Query:   61 YVVALAKSAVPP-----DGFDKIEFLFKPTDGLVSFRSKSLKDAYAGPAL--VGDGNSNRNRMKAFRKKLGWPERG 267
            Y+ A AK+  PP     D  D +EFL +P D LV +RS S    +  P    V D NSN  R++  R+ LGW E G
Sbjct:  136 YLHATAKTVSPPGLTGEDALDDLEFLLRPDDNLVLYRSSSRISVFVYPLTQPVSDRNSNLKRLERIRETLGWEEMG 211          
BLAST of mRNA_H-elongata_contig155549.3642.1 vs. uniprot
Match: A0A448ZTA6_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZTA6_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.520e-6
Identity = 32/92 (34.78%), Postives = 47/92 (51.09%), Query Frame = 1
Query:    4 AAVENDPLLKLVEKDPEGLYVVALAKSAVPP--DGFDKIEFLFKPTDGLVSFRSKSLKDAYAGPAL--VGDGNSNRNRMKAFRKKLGWPERG 267
            A +  DP  +++E      Y+ A   ++ PP  DG D +EFL +P D +V +RS S    +  P    V D N+N  R++  R  LGW E G
Sbjct:  174 AVLNVDPTCQIIEIT--DTYLHATVATSAPPGIDGLDDMEFLIRPEDNVVLYRSASRTSVFVYPLTQPVSDNNTNLKRLQKIRATLGWEELG 263          
BLAST of mRNA_H-elongata_contig155549.3642.1 vs. uniprot
Match: D8LT63_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT63_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 8.740e-6
Identity = 32/89 (35.96%), Postives = 48/89 (53.93%), Query Frame = 1
Query:    1 IAAVE--NDPLLKLVEKDPEGLYVVALAKSAVPPDGFDKIEFLFKPTDGLVSFRSKSLKDAYAGPAL--VGDGNSNRNRMKAFRKKLGW 255
            + AVE  ++  +K+V++  EG Y++A   S VPP   D +EFL KP D +V +RS S    +  P    V D    + R++  R  LGW
Sbjct:  173 VHAVERTSEATMKIVDR--EGHYILAEFPSKVPPGSVDSVEFLVKPEDQIVLYRSVSRDTLFLYPLQQPVSDQGKIKERLEGIRNDLGW 259          
BLAST of mRNA_H-elongata_contig155549.3642.1 vs. uniprot
Match: A0A1E7FHJ7_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FHJ7_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.400e-5
Identity = 27/73 (36.99%), Postives = 40/73 (54.79%), Query Frame = 1
Query:   61 YVVALAKSAVPP--DGFDKIEFLFKPTDGLVSFRSKSLKDAYAGPAL--VGDGNSNRNRMKAFRKKLGWPERG 267
            Y+ A+  +  PP  +G D +EFL +P D ++ +RS S    +  P    V D NSN  R++  R+ LGW E G
Sbjct:  243 YLHAIVPTTSPPGIEGVDDLEFLIRPDDNVILYRSASRTSVFVYPLTQPVSDNNSNLKRLQKIRQSLGWEELG 315          
BLAST of mRNA_H-elongata_contig155549.3642.1 vs. uniprot
Match: A0A6V1S530_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S530_HETAK)

HSP 1 Score: 52.8 bits (125), Expect = 1.720e-5
Identity = 30/90 (33.33%), Postives = 43/90 (47.78%), Query Frame = 1
Query:    1 IAAVENDPL---LKLVEKDPEGLYVVALAKSAVPPDGFDKIEFLFKPTDGLVSFRSKSLKDAYAGP--ALVGDGNSNRNRMKAFRKKLGW 255
            +   E D L   LK+VEKDP   Y+   A + VPP   D +EFL +P D +V +RS +       P    + +      R++  R  LGW
Sbjct:  167 VELAETDSLNLGLKVVEKDPSRYYLHLTAPAKVPPGSTDDLEFLLRPADKIVLYRSATRDTVLVYPFQQYLPEHGQTAGRLETIRDSLGW 256          
BLAST of mRNA_H-elongata_contig155549.3642.1 vs. uniprot
Match: A0A8J2WE71_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WE71_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 3.150e-5
Identity = 33/94 (35.11%), Postives = 44/94 (46.81%), Query Frame = 1
Query:    1 IAAVENDPLLKLVEKDPEGLYVVALAKSAVP---PDGFDKIEFLFKPTDGLVSFRSKSLKDAYAGPAL------VGDGNSNRNRMKAFRKKLGW 255
            + A +  P LK+ E DP   Y+ A A S +        D +E L     GLV  RS S +  +  P        +GD  SNR R++A RK LGW
Sbjct:  155 VKAAQASPDLKIAETDPARRYLRATAPSQISNYKATDVDDVEVLISAEKGLVFHRSASRESVFFFPPQNIYSVPLGDNGSNRGRLEALRKALGW 248          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig155549.3642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7G6Q8_ECTSI1.760e-6978.13Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0QPZ6_9CRYP6.100e-1342.70Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
M1VGZ3_CYAM12.850e-1044.19Uncharacterized protein n=1 Tax=Cyanidioschyzon me... [more]
A0A7J7II66_9RHOD1.540e-839.53Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
A0A7S0CBW6_9STRA2.450e-640.79Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A448ZTA6_9STRA2.520e-634.78Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
D8LT63_ECTSI8.740e-635.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1E7FHJ7_9STRA1.400e-536.99Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A6V1S530_HETAK1.720e-533.33Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A8J2WE71_9STRA3.150e-535.11Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig155549contigH-elongata_contig155549:147..1371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue6.3e-08
Seed eggNOG ortholog45157.CMI167CT
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0009579,GO:0031977,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044436,GO:0044444,GO:0044464
EggNOG OGs28JPF@1,2QS2R@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF1499
Ec32 orthologEc-26_000490.1
Exons3
Model size393
Cds size393
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig155549.3642.1prot_H-elongata_contig155549.3642.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig155549 147..1371 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929918.0695024-CDS-H-elongata_contig155549:146..3151622929918.0695024-CDS-H-elongata_contig155549:146..315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155549 147..315 -
1691679207.8180506-CDS-H-elongata_contig155549:146..3151691679207.8180506-CDS-H-elongata_contig155549:146..315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155549 147..315 -
1622929918.0869474-CDS-H-elongata_contig155549:622..7181622929918.0869474-CDS-H-elongata_contig155549:622..718Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155549 623..718 -
1691679207.8281205-CDS-H-elongata_contig155549:622..7181691679207.8281205-CDS-H-elongata_contig155549:622..718Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155549 623..718 -
1622929918.102998-CDS-H-elongata_contig155549:1243..13711622929918.102998-CDS-H-elongata_contig155549:1243..1371Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155549 1244..1371 -
1691679207.84117-CDS-H-elongata_contig155549:1243..13711691679207.84117-CDS-H-elongata_contig155549:1243..1371Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155549 1244..1371 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig155549.3642.1

>prot_H-elongata_contig155549.3642.1 ID=prot_H-elongata_contig155549.3642.1|Name=mRNA_H-elongata_contig155549.3642.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp
IAAVENDPLLKLVEKDPEGLYVVALAKSAVPPDGFDKIEFLFKPTDGLVS
FRSKSLKDAYAGPALVGDGNSNRNRMKAFRKKLGWPERGIDDYIRDQGID
SGTSRAKGYLSEFGWRQAETQSYGEDDDGF*
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mRNA from alignment at H-elongata_contig155549:147..1371-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig155549.3642.1 ID=mRNA_H-elongata_contig155549.3642.1|Name=mRNA_H-elongata_contig155549.3642.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1225bp|location=Sequence derived from alignment at H-elongata_contig155549:147..1371- (Himanthalia elongata Himel1 dioecious)
ATTGCAGCGGTCGAAAATGATCCACTGCTCAAGCTCGTCGAGAAAGATCC GGAGGGGTTGTACGTCGTTGCTCTAGCAAAATCGGCCGTTCCTCCGGACG GGTTCGACAAGATCGAGTTCCTCTTCAAGTGAGTGCTCGCGGGTATCAAC TCACTACCGTGCTGAGTGTCCTCCTACAGCACATAGCAAATCTTAACACA AAACGGCGGTCGCATGGCTTAGCATCGCGGGCAAAACGAGATCCACCCAC CCCCAAGACTCGTGAGCCCACCCTCTCTGCTCGCAGCAGCCTTTCGGTGC TTGTGGTGTGAGACGGTCGGCGTCACACAAGCGCCGAACGTTCTCGGTTC GTGAAAGAAAAGAGAAGGTGCGGATGTTCTAAGAGGTTTGAATGATTAGT TCAAATGTTTAAAAATAAAAATCATGGGCCCATCCTTTCCTGTGCTTTGG AATTCACTCGGAGCCTGCTGAGGAGTCTGCGGTGGCCATTATATTGCCAT TAATATACCGTGGCCAACCTCCCCTTACGTCCTTGGTATGTCGATGCACT TGGGCACGACCATTTAATATAGATATACTTGTAAATAGAGTGGCGGGCCG AACCTGCTTCCTATCTCCTTTTTTCCTACGTGAACATCCATGGCATCGTG CAGGCCTACTGATGGACTGGTGTCATTTCGATCGAAGAGTCTCAAGGATG CTTACGCGGGCCCGGCGTTAGTTGGGGACGGCAACTCCAACCGCAACAGG TTTGTCCACGCTTCCGCGTTGTGGATCTCCCCGACACGCAGAGTATCTTA CACCCCCCGCCCCTTGGTGGCTCGCCCGTACGCCAATCAGACCTCACATA GCAGCTCCACGGCAGCGAGCACATGGGGCAGACAAAAGCAACGCACAATG TGGTAACTTCCAAATATGATAGCAATGTTTGCCCTTGGATATCGTGTGCA GGCTTGCTTGGTTGCGTCGAACGCTTTCTTCCCTCCACACCCATCCACGA CGCTTTTTGTGTCCCGCCCCTCCCCCCCGACCTTGAAACGCCTCCTTATA CAAAAGGATGAAGGCGTTTCGGAAGAAGTTGGGCTGGCCGGAGAGGGGCA TCGACGACTATATCCGAGATCAGGGGATCGACAGCGGGACTTCCCGCGCC AAGGGCTATTTGAGCGAGTTTGGCTGGAGGCAGGCGGAGACCCAGTCTTA CGGAGAGGACGACGATGGTTTCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig155549:147..1371-

>mRNA_H-elongata_contig155549.3642.1 ID=mRNA_H-elongata_contig155549.3642.1|Name=mRNA_H-elongata_contig155549.3642.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig155549:147..1371- (Himanthalia elongata Himel1 dioecious)
ATTGCAGCGGTCGAAAATGATCCACTGCTCAAGCTCGTCGAGAAAGATCC
GGAGGGGTTGTACGTCGTTGCTCTAGCAAAATCGGCCGTTCCTCCGGACG
GGTTCGACAAGATCGAGTTCCTCTTCAAATTGCAGCGGTCGAAAATGATC
CACTGCTCAAGCTCGTCGAGAAAGATCCGGAGGGGTTGTACGTCGTTGCT
CTAGCAAAATCGGCCGTTCCTCCGGACGGGTTCGACAAGATCGAGTTCCT
CTTCAAGCCTACTGATGGACTGGTGTCATTTCGATCGAAGAGTCTCAAGG
ATGCTTACGCGGGCCCGGCGTTAGTTGGGGACGGCAACTCCAACCGCAAC
AGGCCTACTGATGGACTGGTGTCATTTCGATCGAAGAGTCTCAAGGATGC
TTACGCGGGCCCGGCGTTAGTTGGGGACGGCAACTCCAACCGCAACAGGA
TGAAGGCGTTTCGGAAGAAGTTGGGCTGGCCGGAGAGGGGCATCGACGAC
TATATCCGAGATCAGGGGATCGACAGCGGGACTTCCCGCGCCAAGGGCTA
TTTGAGCGAGTTTGGCTGGAGGCAGGCGGAGACCCAGTCTTACGGAGAGG
ACGACGATGGTTTCTGAGATGAAGGCGTTTCGGAAGAAGTTGGGCTGGCC
GGAGAGGGGCATCGACGACTATATCCGAGATCAGGGGATCGACAGCGGGA
CTTCCCGCGCCAAGGGCTATTTGAGCGAGTTTGGCTGGAGGCAGGCGGAG
ACCCAGTCTTACGGAGAGGACGACGATGGTTTCTGA
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