mRNA_H-elongata_contig155491.3637.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig155491.3637.1
Unique NamemRNA_H-elongata_contig155491.3637.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig155491.3637.1 vs. uniprot
Match: F0XW64_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XW64_AURAN)

HSP 1 Score: 124 bits (311), Expect = 3.940e-32
Identity = 53/83 (63.86%), Postives = 63/83 (75.90%), Query Frame = 1
Query:   10 FIHSQSRGGPCSNPGTVRIWDWEYYREERALTGHGWDVKTVEWHPYKSLIVSGSKDNLVKMWDPRTGNSLSTLYGHKNTVMKV 258
            F  S ++   C++ GTVRIWDWE ++EER L GHGWDVKT  WHP   LI SGSKDN VKMWDPR  + ++TLYGHK+TVMKV
Sbjct:  121 FAPSDAKFCSCADDGTVRIWDWELFQEERILAGHGWDVKTCAWHPSYQLIASGSKDNQVKMWDPRKRSCVATLYGHKHTVMKV 203          
BLAST of mRNA_H-elongata_contig155491.3637.1 vs. uniprot
Match: G4T5A0_SERID (Polyadenylation factor subunit 2 n=1 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4T5A0_SERID)

HSP 1 Score: 114 bits (284), Expect = 2.500e-28
Identity = 47/85 (55.29%), Postives = 62/85 (72.94%), Query Frame = 1
Query:    7 SFIHSQSRGGPCSNPGTVRIWDWEYYREERALTGHGWDVKTVEWHPYKSLIVSGSKDNLVKMWDPRTGNSLSTLYGHKNTVMKVS 261
            SF  + +R   CS+  T++IW +   REER LTGHGWDV+ V+WHP K L+ SGSKDNL+K WDPRTG  L+TL+ HKNT+  ++
Sbjct:   32 SFSPNDARFVTCSDDSTLKIWAFNESREERTLTGHGWDVRCVQWHPSKGLLASGSKDNLIKFWDPRTGTCLTTLHQHKNTIQALA 116          
BLAST of mRNA_H-elongata_contig155491.3637.1 vs. uniprot
Match: V4BJZ7_LOTGI (Uncharacterized protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4BJZ7_LOTGI)

HSP 1 Score: 114 bits (285), Expect = 5.340e-28
Identity = 53/84 (63.10%), Postives = 63/84 (75.00%), Query Frame = 1
Query:    7 SFIHSQSRGGPCSNPGTVRIWDWEYYREERALTGHGWDVKTVEWHPYKSLIVSGSKDNL--VKMWDPRTGNSLSTLYGHKNTVM 252
            SF  S S+   CS+ GTVRIWD+    EER L GHG DVK V+WHP K+LI SGSKDN   +K+WDPRTGNSL+T++ HKNTVM
Sbjct:  169 SFCPSDSKFTTCSDDGTVRIWDFVRCHEERILRGHGADVKCVDWHPQKTLIASGSKDNQQPLKLWDPRTGNSLATIHAHKNTVM 252          
BLAST of mRNA_H-elongata_contig155491.3637.1 vs. uniprot
Match: UPI00097DA884 (pre-mRNA 3' end processing protein WDR33-like n=1 Tax=Paralichthys olivaceus TaxID=8255 RepID=UPI00097DA884)

HSP 1 Score: 110 bits (275), Expect = 1.020e-27
Identity = 50/88 (56.82%), Postives = 64/88 (72.73%), Query Frame = 1
Query:    1 IHSFIHSQSRGGPCSNPGTVRIWDWEYYREERALTGHGWDVKTVEWHPYKSLIVSGSKDNL--VKMWDPRTGNSLSTLYGHKNTVMKV 258
            + SF  + ++   CS+ GTVRIWD+    EER L GHG DVK V+WHP K L+VSGSKD+   +K WDP+TG SL+TL+ HKNTVM+V
Sbjct:   23 LSSFSPTDNKFATCSDDGTVRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEV 110          
BLAST of mRNA_H-elongata_contig155491.3637.1 vs. uniprot
Match: A0A0N0U3Y7_9HYME (Pre-mRNA 3' end processing protein WDR33 n=21 Tax=Apocrita TaxID=7400 RepID=A0A0N0U3Y7_9HYME)

HSP 1 Score: 114 bits (285), Expect = 1.450e-27
Identity = 52/88 (59.09%), Postives = 64/88 (72.73%), Query Frame = 1
Query:    1 IHSFIHSQSRGGPCSNPGTVRIWDWEYYREERALTGHGWDVKTVEWHPYKSLIVSGSKDNL--VKMWDPRTGNSLSTLYGHKNTVMKV 258
            +HSF  +  +   CS+ GTVRIWD+    EER L GHG DVK V WHP KSL++SGSKDN   VK+WDP+TG SL+TL+ HK+TVM V
Sbjct:  302 VHSFSPTDHKLATCSDDGTVRIWDFLRCHEERILRGHGADVKCVHWHPQKSLVISGSKDNQQPVKLWDPKTGQSLATLHAHKSTVMDV 389          
BLAST of mRNA_H-elongata_contig155491.3637.1 vs. uniprot
Match: A0A836FTB2_9HYME (WDR33 protein (Fragment) n=12 Tax=Attini TaxID=143999 RepID=A0A836FTB2_9HYME)

HSP 1 Score: 114 bits (285), Expect = 1.450e-27
Identity = 52/88 (59.09%), Postives = 64/88 (72.73%), Query Frame = 1
Query:    1 IHSFIHSQSRGGPCSNPGTVRIWDWEYYREERALTGHGWDVKTVEWHPYKSLIVSGSKDNL--VKMWDPRTGNSLSTLYGHKNTVMKV 258
            +HSF  +  +   CS+ GTVRIWD+    EER L GHG DVK V WHP KSL++SGSKDN   VK+WDP+TG SL+TL+ HK+TVM V
Sbjct:  301 VHSFSPTDHKLATCSDDGTVRIWDFLRCHEERILRGHGADVKCVHWHPQKSLVISGSKDNQQPVKLWDPKTGQSLATLHAHKSTVMDV 388          
BLAST of mRNA_H-elongata_contig155491.3637.1 vs. uniprot
Match: E9IXY7_SOLIN (Uncharacterized protein (Fragment) n=9 Tax=Formicidae TaxID=36668 RepID=E9IXY7_SOLIN)

HSP 1 Score: 114 bits (285), Expect = 1.450e-27
Identity = 52/88 (59.09%), Postives = 64/88 (72.73%), Query Frame = 1
Query:    1 IHSFIHSQSRGGPCSNPGTVRIWDWEYYREERALTGHGWDVKTVEWHPYKSLIVSGSKDNL--VKMWDPRTGNSLSTLYGHKNTVMKV 258
            +HSF  +  +   CS+ GTVRIWD+    EER L GHG DVK V WHP KSL++SGSKDN   VK+WDP+TG SL+TL+ HK+TVM V
Sbjct:  306 VHSFSPTDHKLATCSDDGTVRIWDFLRCHEERILRGHGADVKCVHWHPQKSLVISGSKDNQQPVKLWDPKTGQSLATLHAHKSTVMDV 393          
BLAST of mRNA_H-elongata_contig155491.3637.1 vs. uniprot
Match: E2AQ06_CAMFO (WD repeat-containing protein 33 n=2 Tax=Camponotus floridanus TaxID=104421 RepID=E2AQ06_CAMFO)

HSP 1 Score: 114 bits (284), Expect = 1.980e-27
Identity = 51/88 (57.95%), Postives = 64/88 (72.73%), Query Frame = 1
Query:    1 IHSFIHSQSRGGPCSNPGTVRIWDWEYYREERALTGHGWDVKTVEWHPYKSLIVSGSKDNL--VKMWDPRTGNSLSTLYGHKNTVMKV 258
            +HSF  +  +   CS+ GTVR+WD+    EER L GHG DVK V WHP KSL++SGSKDN   VK+WDP+TG SL+TL+ HK+TVM V
Sbjct:  303 VHSFSPTDHKLATCSDDGTVRVWDFLRCHEERILRGHGADVKCVHWHPQKSLVISGSKDNQQPVKLWDPKTGQSLATLHAHKSTVMDV 390          
BLAST of mRNA_H-elongata_contig155491.3637.1 vs. uniprot
Match: A0A8H8SNN8_9AGAM (Polyadenylation factor subunit 2 n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8SNN8_9AGAM)

HSP 1 Score: 113 bits (283), Expect = 2.010e-27
Identity = 47/77 (61.04%), Postives = 57/77 (74.03%), Query Frame = 1
Query:    7 SFIHSQSRGGPCSNPGTVRIWDWEYYREERALTGHGWDVKTVEWHPYKSLIVSGSKDNLVKMWDPRTGNSLSTLYGH 237
            SF    SR   C +  +VR+W +E  REER +TGHGWDVK +EWHP + L+VSGSKDNLVK WDPRTG +LSTL+ H
Sbjct:  214 SFAPGDSRFASCGDDASVRVWAFEEMREERCITGHGWDVKCIEWHPTRGLLVSGSKDNLVKFWDPRTGQNLSTLHQH 290          
BLAST of mRNA_H-elongata_contig155491.3637.1 vs. uniprot
Match: A0A2D4P7A4_MICSU (Uncharacterized protein (Fragment) n=1 Tax=Micrurus surinamensis TaxID=129470 RepID=A0A2D4P7A4_MICSU)

HSP 1 Score: 108 bits (270), Expect = 4.150e-27
Identity = 49/79 (62.03%), Postives = 60/79 (75.95%), Query Frame = 1
Query:   40 CSNPGTVRIWDWEYYREERALTGHGWDVKTVEWHPYKSLIVSGSKDNL--VKMWDPRTGNSLSTLYGHKNTVMKVSLGV 270
            CS+ GTVRIWD+    EER L GHG DVK V+WHP K L+VSGSKD+   +K WDP+TG SL+TL+ HKNTVM+V L +
Sbjct:    1 CSDDGTVRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKLNL 79          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig155491.3637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0XW64_AURAN3.940e-3263.86Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
G4T5A0_SERID2.500e-2855.29Polyadenylation factor subunit 2 n=1 Tax=Serendipi... [more]
V4BJZ7_LOTGI5.340e-2863.10Uncharacterized protein (Fragment) n=1 Tax=Lottia ... [more]
UPI00097DA8841.020e-2756.82pre-mRNA 3' end processing protein WDR33-like n=1 ... [more]
A0A0N0U3Y7_9HYME1.450e-2759.09Pre-mRNA 3' end processing protein WDR33 n=21 Tax=... [more]
A0A836FTB2_9HYME1.450e-2759.09WDR33 protein (Fragment) n=12 Tax=Attini TaxID=143... [more]
E9IXY7_SOLIN1.450e-2759.09Uncharacterized protein (Fragment) n=9 Tax=Formici... [more]
E2AQ06_CAMFO1.980e-2757.95WD repeat-containing protein 33 n=2 Tax=Camponotus... [more]
A0A8H8SNN8_9AGAM2.010e-2761.04Polyadenylation factor subunit 2 n=2 Tax=Ceratobas... [more]
A0A2D4P7A4_MICSU4.150e-2762.03Uncharacterized protein (Fragment) n=1 Tax=Micruru... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig155491contigH-elongata_contig155491:370..681 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.7
Seed ortholog evalue1.8e-25
Seed eggNOG ortholog44056.XP_009032631.1
Preferred nameWDR33
KEGG koko:K15542
KEGG Pathwayko03015,map03015
GOsGO:0000003,GO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000785,GO:0000790,GO:0001650,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005847,GO:0005849,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0007276,GO:0007283,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0018130,GO:0019438,GO:0019953,GO:0022414,GO:0031123,GO:0031124,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0032774,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044454,GO:0044464,GO:0044703,GO:0045184,GO:0046483,GO:0046907,GO:0048232,GO:0048609,GO:0050657,GO:0050658,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0090305,GO:0090501,GO:0097659,GO:0098787,GO:0098789,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.mRNA cleavage
EggNOG OGsCOG2319@1,KOG0284@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Hectar predicted targeting categoryother localisation
Exons2
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929917.321078-CDS-H-elongata_contig155491:369..4261622929917.321078-CDS-H-elongata_contig155491:369..426Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155491 370..426 +
1691679207.6513958-CDS-H-elongata_contig155491:369..4261691679207.6513958-CDS-H-elongata_contig155491:369..426Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155491 370..426 +
1622929917.333174-CDS-H-elongata_contig155491:462..6811622929917.333174-CDS-H-elongata_contig155491:462..681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155491 463..681 +
1691679207.6610389-CDS-H-elongata_contig155491:462..6811691679207.6610389-CDS-H-elongata_contig155491:462..681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155491 463..681 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig155491.3637.1prot_H-elongata_contig155491.3637.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig155491 370..681 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig155491.3637.1

>prot_H-elongata_contig155491.3637.1 ID=prot_H-elongata_contig155491.3637.1|Name=mRNA_H-elongata_contig155491.3637.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
IHSFIHSQSRGGPCSNPGTVRIWDWEYYREERALTGHGWDVKTVEWHPYK
SLIVSGSKDNLVKMWDPRTGNSLSTLYGHKNTVMKVSLGVG*
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mRNA from alignment at H-elongata_contig155491:370..681+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig155491.3637.1 ID=mRNA_H-elongata_contig155491.3637.1|Name=mRNA_H-elongata_contig155491.3637.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=312bp|location=Sequence derived from alignment at H-elongata_contig155491:370..681+ (Himanthalia elongata Himel1 dioecious)
ATACACAGTTTCATACATTCCCAATCCCGTGGCGGTCCCTGCAGCAACCC AGGCACGGTGGACGATTTTTATCCCGTCACGATTACCAACCAGGTGCGCA TCTGGGACTGGGAGTACTACAGGGAGGAGCGCGCCCTGACGGGGCACGGG TGGGACGTCAAGACCGTGGAGTGGCACCCCTACAAATCGCTCATCGTGTC GGGGAGCAAGGACAACCTCGTGAAGATGTGGGACCCTCGAACGGGGAACA GCCTCAGCACTCTCTACGGCCACAAAAACACCGTCATGAAGGTTAGCTTG GGAGTAGGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig155491:370..681+

>mRNA_H-elongata_contig155491.3637.1 ID=mRNA_H-elongata_contig155491.3637.1|Name=mRNA_H-elongata_contig155491.3637.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig155491:370..681+ (Himanthalia elongata Himel1 dioecious)
ATACACAGTTTCATACATTCCCAATCCCGTGGCGGTCCCTGCAGCAACCC
AGGCACGATACACAGTTTCATACATTCCCAATCCCGTGGCGGTCCCTGCA
GCAACCCAGGCACGGTGCGCATCTGGGACTGGGAGTACTACAGGGAGGAG
CGCGCCCTGACGGGGCACGGGTGGGACGTCAAGACCGTGGAGTGGCACCC
CTACAAATCGCTCATCGTGTCGGGGAGCAAGGACAACCTCGTGAAGATGT
GGGACCCTCGAACGGGGAACAGCCTCAGCACTCTCTACGGCCACAAAAAC
ACCGTCATGAAGGTTAGCTTGGGAGTAGGGTAGGTGCGCATCTGGGACTG
GGAGTACTACAGGGAGGAGCGCGCCCTGACGGGGCACGGGTGGGACGTCA
AGACCGTGGAGTGGCACCCCTACAAATCGCTCATCGTGTCGGGGAGCAAG
GACAACCTCGTGAAGATGTGGGACCCTCGAACGGGGAACAGCCTCAGCAC
TCTCTACGGCCACAAAAACACCGTCATGAAGGTTAGCTTGGGAGTAGGGT
AG
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