mRNA_H-elongata_contig155491.3637.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig155491.3637.1 vs. uniprot
Match: F0XW64_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XW64_AURAN) HSP 1 Score: 124 bits (311), Expect = 3.940e-32 Identity = 53/83 (63.86%), Postives = 63/83 (75.90%), Query Frame = 1
Query: 10 FIHSQSRGGPCSNPGTVRIWDWEYYREERALTGHGWDVKTVEWHPYKSLIVSGSKDNLVKMWDPRTGNSLSTLYGHKNTVMKV 258
F S ++ C++ GTVRIWDWE ++EER L GHGWDVKT WHP LI SGSKDN VKMWDPR + ++TLYGHK+TVMKV
Sbjct: 121 FAPSDAKFCSCADDGTVRIWDWELFQEERILAGHGWDVKTCAWHPSYQLIASGSKDNQVKMWDPRKRSCVATLYGHKHTVMKV 203
BLAST of mRNA_H-elongata_contig155491.3637.1 vs. uniprot
Match: G4T5A0_SERID (Polyadenylation factor subunit 2 n=1 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4T5A0_SERID) HSP 1 Score: 114 bits (284), Expect = 2.500e-28 Identity = 47/85 (55.29%), Postives = 62/85 (72.94%), Query Frame = 1
Query: 7 SFIHSQSRGGPCSNPGTVRIWDWEYYREERALTGHGWDVKTVEWHPYKSLIVSGSKDNLVKMWDPRTGNSLSTLYGHKNTVMKVS 261
SF + +R CS+ T++IW + REER LTGHGWDV+ V+WHP K L+ SGSKDNL+K WDPRTG L+TL+ HKNT+ ++
Sbjct: 32 SFSPNDARFVTCSDDSTLKIWAFNESREERTLTGHGWDVRCVQWHPSKGLLASGSKDNLIKFWDPRTGTCLTTLHQHKNTIQALA 116
BLAST of mRNA_H-elongata_contig155491.3637.1 vs. uniprot
Match: V4BJZ7_LOTGI (Uncharacterized protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4BJZ7_LOTGI) HSP 1 Score: 114 bits (285), Expect = 5.340e-28 Identity = 53/84 (63.10%), Postives = 63/84 (75.00%), Query Frame = 1
Query: 7 SFIHSQSRGGPCSNPGTVRIWDWEYYREERALTGHGWDVKTVEWHPYKSLIVSGSKDNL--VKMWDPRTGNSLSTLYGHKNTVM 252
SF S S+ CS+ GTVRIWD+ EER L GHG DVK V+WHP K+LI SGSKDN +K+WDPRTGNSL+T++ HKNTVM
Sbjct: 169 SFCPSDSKFTTCSDDGTVRIWDFVRCHEERILRGHGADVKCVDWHPQKTLIASGSKDNQQPLKLWDPRTGNSLATIHAHKNTVM 252
BLAST of mRNA_H-elongata_contig155491.3637.1 vs. uniprot
Match: UPI00097DA884 (pre-mRNA 3' end processing protein WDR33-like n=1 Tax=Paralichthys olivaceus TaxID=8255 RepID=UPI00097DA884) HSP 1 Score: 110 bits (275), Expect = 1.020e-27 Identity = 50/88 (56.82%), Postives = 64/88 (72.73%), Query Frame = 1
Query: 1 IHSFIHSQSRGGPCSNPGTVRIWDWEYYREERALTGHGWDVKTVEWHPYKSLIVSGSKDNL--VKMWDPRTGNSLSTLYGHKNTVMKV 258
+ SF + ++ CS+ GTVRIWD+ EER L GHG DVK V+WHP K L+VSGSKD+ +K WDP+TG SL+TL+ HKNTVM+V
Sbjct: 23 LSSFSPTDNKFATCSDDGTVRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEV 110
BLAST of mRNA_H-elongata_contig155491.3637.1 vs. uniprot
Match: A0A0N0U3Y7_9HYME (Pre-mRNA 3' end processing protein WDR33 n=21 Tax=Apocrita TaxID=7400 RepID=A0A0N0U3Y7_9HYME) HSP 1 Score: 114 bits (285), Expect = 1.450e-27 Identity = 52/88 (59.09%), Postives = 64/88 (72.73%), Query Frame = 1
Query: 1 IHSFIHSQSRGGPCSNPGTVRIWDWEYYREERALTGHGWDVKTVEWHPYKSLIVSGSKDNL--VKMWDPRTGNSLSTLYGHKNTVMKV 258
+HSF + + CS+ GTVRIWD+ EER L GHG DVK V WHP KSL++SGSKDN VK+WDP+TG SL+TL+ HK+TVM V
Sbjct: 302 VHSFSPTDHKLATCSDDGTVRIWDFLRCHEERILRGHGADVKCVHWHPQKSLVISGSKDNQQPVKLWDPKTGQSLATLHAHKSTVMDV 389
BLAST of mRNA_H-elongata_contig155491.3637.1 vs. uniprot
Match: A0A836FTB2_9HYME (WDR33 protein (Fragment) n=12 Tax=Attini TaxID=143999 RepID=A0A836FTB2_9HYME) HSP 1 Score: 114 bits (285), Expect = 1.450e-27 Identity = 52/88 (59.09%), Postives = 64/88 (72.73%), Query Frame = 1
Query: 1 IHSFIHSQSRGGPCSNPGTVRIWDWEYYREERALTGHGWDVKTVEWHPYKSLIVSGSKDNL--VKMWDPRTGNSLSTLYGHKNTVMKV 258
+HSF + + CS+ GTVRIWD+ EER L GHG DVK V WHP KSL++SGSKDN VK+WDP+TG SL+TL+ HK+TVM V
Sbjct: 301 VHSFSPTDHKLATCSDDGTVRIWDFLRCHEERILRGHGADVKCVHWHPQKSLVISGSKDNQQPVKLWDPKTGQSLATLHAHKSTVMDV 388
BLAST of mRNA_H-elongata_contig155491.3637.1 vs. uniprot
Match: E9IXY7_SOLIN (Uncharacterized protein (Fragment) n=9 Tax=Formicidae TaxID=36668 RepID=E9IXY7_SOLIN) HSP 1 Score: 114 bits (285), Expect = 1.450e-27 Identity = 52/88 (59.09%), Postives = 64/88 (72.73%), Query Frame = 1
Query: 1 IHSFIHSQSRGGPCSNPGTVRIWDWEYYREERALTGHGWDVKTVEWHPYKSLIVSGSKDNL--VKMWDPRTGNSLSTLYGHKNTVMKV 258
+HSF + + CS+ GTVRIWD+ EER L GHG DVK V WHP KSL++SGSKDN VK+WDP+TG SL+TL+ HK+TVM V
Sbjct: 306 VHSFSPTDHKLATCSDDGTVRIWDFLRCHEERILRGHGADVKCVHWHPQKSLVISGSKDNQQPVKLWDPKTGQSLATLHAHKSTVMDV 393
BLAST of mRNA_H-elongata_contig155491.3637.1 vs. uniprot
Match: E2AQ06_CAMFO (WD repeat-containing protein 33 n=2 Tax=Camponotus floridanus TaxID=104421 RepID=E2AQ06_CAMFO) HSP 1 Score: 114 bits (284), Expect = 1.980e-27 Identity = 51/88 (57.95%), Postives = 64/88 (72.73%), Query Frame = 1
Query: 1 IHSFIHSQSRGGPCSNPGTVRIWDWEYYREERALTGHGWDVKTVEWHPYKSLIVSGSKDNL--VKMWDPRTGNSLSTLYGHKNTVMKV 258
+HSF + + CS+ GTVR+WD+ EER L GHG DVK V WHP KSL++SGSKDN VK+WDP+TG SL+TL+ HK+TVM V
Sbjct: 303 VHSFSPTDHKLATCSDDGTVRVWDFLRCHEERILRGHGADVKCVHWHPQKSLVISGSKDNQQPVKLWDPKTGQSLATLHAHKSTVMDV 390
BLAST of mRNA_H-elongata_contig155491.3637.1 vs. uniprot
Match: A0A8H8SNN8_9AGAM (Polyadenylation factor subunit 2 n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8SNN8_9AGAM) HSP 1 Score: 113 bits (283), Expect = 2.010e-27 Identity = 47/77 (61.04%), Postives = 57/77 (74.03%), Query Frame = 1
Query: 7 SFIHSQSRGGPCSNPGTVRIWDWEYYREERALTGHGWDVKTVEWHPYKSLIVSGSKDNLVKMWDPRTGNSLSTLYGH 237
SF SR C + +VR+W +E REER +TGHGWDVK +EWHP + L+VSGSKDNLVK WDPRTG +LSTL+ H
Sbjct: 214 SFAPGDSRFASCGDDASVRVWAFEEMREERCITGHGWDVKCIEWHPTRGLLVSGSKDNLVKFWDPRTGQNLSTLHQH 290
BLAST of mRNA_H-elongata_contig155491.3637.1 vs. uniprot
Match: A0A2D4P7A4_MICSU (Uncharacterized protein (Fragment) n=1 Tax=Micrurus surinamensis TaxID=129470 RepID=A0A2D4P7A4_MICSU) HSP 1 Score: 108 bits (270), Expect = 4.150e-27 Identity = 49/79 (62.03%), Postives = 60/79 (75.95%), Query Frame = 1
Query: 40 CSNPGTVRIWDWEYYREERALTGHGWDVKTVEWHPYKSLIVSGSKDNL--VKMWDPRTGNSLSTLYGHKNTVMKVSLGV 270
CS+ GTVRIWD+ EER L GHG DVK V+WHP K L+VSGSKD+ +K WDP+TG SL+TL+ HKNTVM+V L +
Sbjct: 1 CSDDGTVRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKLNL 79 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig155491.3637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig155491.3637.1 >prot_H-elongata_contig155491.3637.1 ID=prot_H-elongata_contig155491.3637.1|Name=mRNA_H-elongata_contig155491.3637.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp IHSFIHSQSRGGPCSNPGTVRIWDWEYYREERALTGHGWDVKTVEWHPYKback to top mRNA from alignment at H-elongata_contig155491:370..681+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig155491.3637.1 ID=mRNA_H-elongata_contig155491.3637.1|Name=mRNA_H-elongata_contig155491.3637.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=312bp|location=Sequence derived from alignment at H-elongata_contig155491:370..681+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig155491:370..681+ >mRNA_H-elongata_contig155491.3637.1 ID=mRNA_H-elongata_contig155491.3637.1|Name=mRNA_H-elongata_contig155491.3637.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig155491:370..681+ (Himanthalia elongata Himel1 dioecious)back to top |