mRNA_H-elongata_contig15537.3628.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15537.3628.1
Unique NamemRNA_H-elongata_contig15537.3628.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig15537.3628.1 vs. uniprot
Match: D7G732_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G732_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 1.100e-32
Identity = 66/114 (57.89%), Postives = 74/114 (64.91%), Query Frame = 1 
Query:    1 EYSMGGSVECSACPVGWLCSEGLGVPCGYGTYPRPITTTVQEEEGAFSSTPDGVYGGSCSECPAGSSCPGAGLREECSPGTFSXXXVASNXXMXCPPGAFANGNASVECEDCAA 342
            EYSMGG +EC  CPVGWLCS+GLGVPCGYGT    +TT  QEEEG+ SS   G YGGSC  CPAG  CPG G+ +E       XXX      M C PG+F N  A+ ECEDC A
Sbjct: 1552 EYSMGGYIECLPCPVGWLCSQGLGVPCGYGTTRTSLTTNAQEEEGSTSSVA-GTYGGSCISCPAGMECPGGGVFQEXXXXXXXXXXXXXXMCMPCFPGSFTNDTAAAECEDCPA 1664
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BLAST of mRNA_H-elongata_contig15537.3628.1 vs. uniprot
Match: UPI001CF0F427 (uncharacterized protein LOC114956221 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF0F427)

HSP 1 Score: 73.6 bits (179), Expect = 1.010e-12
Identity = 43/123 (34.96%), Postives = 60/123 (48.78%), Query Frame = 1 
Query:    1 EYSMGGSVECSACPVGWLCSEGLGVPCGYGTYPRPITTTVQEEEGAFSSTPDGVYGGSCSECPAGSSCPGAGLREECSPGTFSXXXVASNXXMXCPPGAFANGNASVECEDCAAGESINRKET 369
            E+S G +  CSACP GWLCS G  +PC   TY +  +T   E+               C +C  G+ C   G+R++C+PGT+S           CPPG+F N + +  C  CA G S    +T
Sbjct: 1758 EFSFGLAANCSACPEGWLCSNGTALPCPASTYVKCNSTWCPEK---------------CFDCEPGTVC-FEGMRQDCTPGTYSNGK--GFPCRLCPPGSFNNQSRAGTCHCCADGYSSTSMKT 1862
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BLAST of mRNA_H-elongata_contig15537.3628.1 vs. uniprot
Match: UPI001CF4E1A7 (uncharacterized protein LOC114956219 n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF4E1A7)

HSP 1 Score: 68.6 bits (166), Expect = 5.620e-11
Identity = 38/110 (34.55%), Postives = 55/110 (50.00%), Query Frame = 1 
Query:    1 EYSMGGSVECSACPVGWLCSEGLGVPCGYGTYPRPITTTVQEEEGAFSSTPDGVYGGSCSECPAGSSCPGAGLREECSPGTFSXXXVASNXXMXCPPGAFANGNASVECE 330
            E+S G +  CSACP GWLCS G  +PC   TY +  +T   E+               C +C  G+ C   G+R++C+PGT+S           CPPG+F N + +  C+
Sbjct:  664 EFSFGLAASCSACPEGWLCSNGTALPCPASTYVKCNSTWCPEK---------------CFDCEPGTVC-FEGMRQDCTPGTYSNGK--GFPCRLCPPGSFNNQSRAGTCQ 755
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15537.3628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G732_ECTSI1.100e-3257.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI001CF0F4271.010e-1234.96uncharacterized protein LOC114956221 n=1 Tax=Acrop... [more]
UPI001CF4E1A75.620e-1134.55uncharacterized protein LOC114956219 n=2 Tax=Acrop... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15537contigH-elongata_contig15537:1338..1706 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.8
Seed ortholog evalue2.7e-26
Seed eggNOG ortholog2880.D7G732
EggNOG free text desc.calcium ion binding
EggNOG OGsKOG1217@1,KOG1217@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size360
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929916.3965173-CDS-H-elongata_contig15537:1337..16971622929916.3965173-CDS-H-elongata_contig15537:1337..1697Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15537 1338..1697 -
1691679207.3056405-CDS-H-elongata_contig15537:1337..16971691679207.3056405-CDS-H-elongata_contig15537:1337..1697Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15537 1338..1697 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929916.4227622-UTR-H-elongata_contig15537:1697..17061622929916.4227622-UTR-H-elongata_contig15537:1697..1706Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15537 1698..1706 -
1691679207.3165433-UTR-H-elongata_contig15537:1697..17061691679207.3165433-UTR-H-elongata_contig15537:1697..1706Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15537 1698..1706 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15537.3628.1prot_H-elongata_contig15537.3628.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15537 1338..1697 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15537.3628.1

>prot_H-elongata_contig15537.3628.1 ID=prot_H-elongata_contig15537.3628.1|Name=mRNA_H-elongata_contig15537.3628.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
MGGSVECSACPVGWLCSEGLGVPCGYGTYPRPITTTVQEEEGAFSSTPDG
VYGGSCSECPAGSSCPGAGLREECSPGTFSPGGVASNMCMPCPPGAFANG
NASVECEDCAAGESINRKET
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mRNA from alignment at H-elongata_contig15537:1338..1706-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15537.3628.1 ID=mRNA_H-elongata_contig15537.3628.1|Name=mRNA_H-elongata_contig15537.3628.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=369bp|location=Sequence derived from alignment at H-elongata_contig15537:1338..1706- (Himanthalia elongata Himel1 dioecious)
GAGTACAGCATGGGCGGCTCTGTGGAGTGTTCCGCCTGTCCGGTAGGCTG
GCTGTGCTCCGAGGGACTGGGCGTGCCGTGCGGCTACGGCACGTACCCGC
GGCCAATCACGACCACCGTTCAAGAAGAAGAAGGAGCGTTTTCGAGCACA
CCCGATGGTGTGTACGGGGGAAGTTGCTCGGAATGCCCTGCTGGCAGTTC
CTGCCCTGGGGCGGGCCTCCGCGAGGAGTGCTCACCGGGAACATTTTCAC
CCGGTGGTGTGGCGAGCAACATGTGCATGCCGTGCCCGCCTGGAGCTTTC
GCCAACGGTAACGCGAGCGTAGAGTGTGAGGATTGTGCGGCTGGTGAGAG
CATCAACAGGAAAGAAACC
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Coding sequence (CDS) from alignment at H-elongata_contig15537:1338..1706-

>mRNA_H-elongata_contig15537.3628.1 ID=mRNA_H-elongata_contig15537.3628.1|Name=mRNA_H-elongata_contig15537.3628.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig15537:1338..1706- (Himanthalia elongata Himel1 dioecious)
ATGGGCGGCTCTGTGGAGTGTTCCGCCTGTCCGGTAGGCTGGCTGTGCTC
CGAGGGACTGGGCGTGCCGTGCGGCTACGGCACGTACCCGCGGCCAATCA
CGACCACCGTTCAAGAAGAAGAAGGAGCGTTTTCGAGCACACCCGATGGT
GTGTACGGGGGAAGTTGCTCGGAATGCCCTGCTGGCAGTTCCTGCCCTGG
GGCGGGCCTCCGCGAGGAGTGCTCACCGGGAACATTTTCACCCGGTGGTG
TGGCGAGCAACATGTGCATGCCGTGCCCGCCTGGAGCTTTCGCCAACGGT
AACGCGAGCGTAGAGTGTGAGGATTGTGCGGCTGGTGAGAGCATCAACAG
GAAAGAAACCATGGGCGGCTCTGTGGAGTGTTCCGCCTGTCCGGTAGGCT
GGCTGTGCTCCGAGGGACTGGGCGTGCCGTGCGGCTACGGCACGTACCCG
CGGCCAATCACGACCACCGTTCAAGAAGAAGAAGGAGCGTTTTCGAGCAC
ACCCGATGGTGTGTACGGGGGAAGTTGCTCGGAATGCCCTGCTGGCAGTT
CCTGCCCTGGGGCGGGCCTCCGCGAGGAGTGCTCACCGGGAACATTTTCA
CCCGGTGGTGTGGCGAGCAACATGTGCATGCCGTGCCCGCCTGGAGCTTT
CGCCAACGGTAACGCGAGCGTAGAGTGTGAGGATTGTGCGGCTGGTGAGA
GCATCAACAGGAAAGAAACC
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