prot_H-elongata_contig15537.3628.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig15537.3628.1
Unique Nameprot_H-elongata_contig15537.3628.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length120
Homology
[Close]
BLAST of mRNA_H-elongata_contig15537.3628.1 vs. uniprot
Match: D7G732_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G732_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 1.920e-30
Identity = 63/111 (56.76%), Postives = 71/111 (63.96%), Query Frame = 0 
Query:    1 MGGSVECSACPVGWLCSEGLGVPCGYGTYPRPITTTVQEEEGAFSSTPDGVYGGSCSECPAGSSCPGAGLREECSPGTFSXXXVASNXXMXCPPGAFANGNASVECEDCAA 111
            MGG +EC  CPVGWLCS+GLGVPCGYGT    +TT  QEEEG+ SS   G YGGSC  CPAG  CPG G+ +E       XXX      M C PG+F N  A+ ECEDC A
Sbjct: 1555 MGGYIECLPCPVGWLCSQGLGVPCGYGTTRTSLTTNAQEEEGSTSSVA-GTYGGSCISCPAGMECPGGGVFQEXXXXXXXXXXXXXXMCMPCFPGSFTNDTAAAECEDCPA 1664
[Close]
BLAST of mRNA_H-elongata_contig15537.3628.1 vs. uniprot
Match: UPI001CF0F427 (uncharacterized protein LOC114956221 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF0F427)

HSP 1 Score: 68.6 bits (166), Expect = 5.140e-11
Identity = 41/120 (34.17%), Postives = 57/120 (47.50%), Query Frame = 0 
Query:    1 MGGSVECSACPVGWLCSEGLGVPCGYGTYPRPITTTVQEEEGAFSSTPDGVYGGSCSECPAGSSCPGAGLREECSPGTFSXXXVASNXXMXCPPGAFANGNASVECEDCAAGESINRKET 120
             G +  CSACP GWLCS G  +PC   TY +  +T   E+               C +C  G+ C   G+R++C+PGT+S           CPPG+F N + +  C  CA G S    +T
Sbjct: 1761 FGLAANCSACPEGWLCSNGTALPCPASTYVKCNSTWCPEK---------------CFDCEPGTVC-FEGMRQDCTPGTYSNGK--GFPCRLCPPGSFNNQSRAGTCHCCADGYSSTSMKT 1862
[Close]
BLAST of mRNA_H-elongata_contig15537.3628.1 vs. uniprot
Match: UPI001CF4E1A7 (uncharacterized protein LOC114956219 n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF4E1A7)

HSP 1 Score: 63.5 bits (153), Expect = 2.870e-9
Identity = 36/107 (33.64%), Postives = 52/107 (48.60%), Query Frame = 0 
Query:    1 MGGSVECSACPVGWLCSEGLGVPCGYGTYPRPITTTVQEEEGAFSSTPDGVYGGSCSECPAGSSCPGAGLREECSPGTFSXXXVASNXXMXCPPGAFANGNASVECE 107
             G +  CSACP GWLCS G  +PC   TY +  +T   E+               C +C  G+ C   G+R++C+PGT+S           CPPG+F N + +  C+
Sbjct:  667 FGLAASCSACPEGWLCSNGTALPCPASTYVKCNSTWCPEK---------------CFDCEPGTVC-FEGMRQDCTPGTYSNGK--GFPCRLCPPGSFNNQSRAGTCQ 755
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15537.3628.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G732_ECTSI1.920e-3056.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI001CF0F4275.140e-1134.17uncharacterized protein LOC114956221 n=1 Tax=Acrop... [more]
UPI001CF4E1A72.870e-933.64uncharacterized protein LOC114956219 n=2 Tax=Acrop... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.10.50.10coord: 67..120
e-value: 6.1E-5
score: 25.0
IPR009030Growth factor receptor cysteine-rich domain superfamilySUPERFAMILY57184Growth factor receptor domaincoord: 4..95

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15537contigH-elongata_contig15537:1338..1697 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15537.3628.1mRNA_H-elongata_contig15537.3628.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig15537 1338..1706 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig15537.3628.1 ID=prot_H-elongata_contig15537.3628.1|Name=mRNA_H-elongata_contig15537.3628.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
MGGSVECSACPVGWLCSEGLGVPCGYGTYPRPITTTVQEEEGAFSSTPDG
VYGGSCSECPAGSSCPGAGLREECSPGTFSPGGVASNMCMPCPPGAFANG
NASVECEDCAAGESINRKET
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009030Growth_fac_rcpt_cys_sf